ID:

dsi_27109

 Coordinate:

2r:4927642-4927699 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4926828_4927641_+]; CDS [2r_4926828_4927641_+]; CDS [2r_4927700_4928264_+]; exon [2r_4927700_4928264_+]; intron [2r_4927642_4927699_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------##################################################
GTACGGGAGTAAGGGTGCGCCGTGATCTCAAGGAGCTTACTGCATTTAATGTGAGTATATACCACTTATACTCATTTTGTCCATAAAATAACTATTATTGCCTGTTAGATTCCCGAGTTGGACGATCCAAAATCGCTGGCCGTGGACTGGATATCTCA
**************************************************(((((((((.......))))))))).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
.......................................................................................................GTTAGATTCCCGAGTTGGACGATCC.............................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.................CGCCGTGATCTCAAGGAGC.......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.........TAAGGGTGCGCCGTGATCTCAAGGAG........................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
......................TGATCTCAAGGAGCTTACTGCATC................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................TTCCCGAGTTGGACGATCCA............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..ACGGGAATAAGGGTTCG........................................................................................................................................... 17 2 3 0.67 2 0 0 0 2 0 0 0 0
..ACGGGAATAAGGGTTCGA.......................................................................................................................................... 18 3 20 0.65 13 0 0 0 0 13 0 0 0
............................................................................................................................................CGTGGACTGTATATC... 15 1 4 0.25 1 0 0 0 0 0 1 0 0
...CGGGAATAAGGGTTCG........................................................................................................................................... 16 2 20 0.10 2 0 0 0 2 0 0 0 0
.......CGTAAGGGTGCGCCCT....................................................................................................................................... 16 2 10 0.10 1 0 0 0 1 0 0 0 0
...CGGGAGAAAGGGTGC............................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 1 0 0
...................................................................................................................AGTCCGACGATCCAAAA.......................... 17 2 13 0.08 1 0 0 0 0 0 0 1 0
.................................................................................................TTGCCTGTGAGAGTCCC............................................ 17 2 16 0.06 1 0 0 0 1 0 0 0 0
.........................................................TATACCAGTTATTCTCCTTT................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 1
.............................AAGGAGCTTACTGGGT................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CATGCCCTCATTCCCACGCGGCACTAGAGTTCCTCGAATGACGTAAATTACACTCATATATGGTGAATATGAGTAAAACAGGTATTTTATTGATAATAACGGACAATCTAAGGGCTCAACCTGCTAGGTTTTAGCGACCGGCACCTGACCTATAGAGT
**************************************************(((((((((.......))))))))).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................ATGGTGAATATGAGTAAAACAGGT........................................................................... 24 0 1 1.00 1 1 0 0
......................................TGACGTAAATTACACTCATA.................................................................................................... 20 0 1 1.00 1 1 0 0
.............................................................................................................AAGGGCTCAACCTTTTAGGTTTT.......................... 23 2 1 1.00 1 0 1 0
.......................................................................AGTAAAGCAGGTATT........................................................................ 15 1 20 0.05 1 0 0 1

Generated: 04/23/2015 at 08:34 AM