dsi_27107

CDS [2r_17653607_17654842_+]; exon [2r_17653607_17654842_+]; intron [2r_17643165_17653606_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTACCCAAATACCACGCTGCCTTACAAAGGAAACACATGCAATATCTTAGACTTAGCATATAGTGTAAGAGAAGAGCTAATACTAGATGTAAGCCGCAAGTGCTTTGGATAACCCTAGATGCAAACACACACTCAGGAGCTTGGGATGATATCGCCTTATATGCCATATACTATACACACATGCATCCACACACCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG **************************************************************(((.......(((((...............((...((((.((((.((........)).))))....))))..)))))))...)))***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	O002 Head	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis
...............................................................................................................................ACACACTCAGGAGCTTGGGATG.....................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TGCAAACACACACTCAGGAGCTTGGGA.......................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................CCTCCGCGGACATCGAAGACGGTAAGG..............	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ACACACCACAGAGCTACTGACCTCCGCG.................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................CACACGACAGAGCTACTGACCTCC....................................	24	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................TGCAAACACACACTCAGGAGCTT...........................................................................................................	23	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................TCCGCGGACATCGAAGACGGTAAGG..............	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................CACACCACAGAGCTACTGACCTCCGCG.................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................TGTAAGAGAAGAGCTAATACTAGATGTA..............................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................CACACGACAGAGCTACTGACCTCCGC..................................	26	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................TCCACACACCACAGAGCTACCGACCTC.....................................	27	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................CACTCAGGAGCTTGGGAT......................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................CCACACACCACAGAGCTACTGACCT......................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CCACACACCACAGAGCTACTGA.........................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................AGATGTATGCCGCAAGTA...................................................................................................................................................	18	2	4	0.25	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................TCAAGAGCTGCGGATGATAT.................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................TCGCCTTATATTCCTTAT................................................................................	18	2	11	0.09	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCTAAGGTTGAGTTCGAGA..	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAACGTGGAGTTCGAA...	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0

AAATGGGTTTATGGTGCGACGGAATGTTTCCTTTGTGTACGTTATAGAATCTGAATCGTATATCACATTCTCTTCTCGATTATGATCTACATTCGGCGTTCACGAAACCTATTGGGATCTACGTTTGTGTGTGAGTCCTCGAACCCTACTATAGCGGAATATACGGTATATGATATGTGTGTACGTAGGTGTGTGGTGTCTCGATGACTGGAGGCGCCTGTAGCTTCTGCCATTCCACCTCAAGCTGTTC ***************************************************************************************************(((.......(((((...............((...((((.((((.((........)).))))....))))..)))))))...)))**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR1275487 Male larvae
..........................................................................................................................................................................................................GATGACTCGATGCGCCTG..............................	18	2	4	0.50	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................GAGCCTGCAGCTTCTGC....................	17	2	9	0.44	4	0	3	1	0	0	0
.....................................................................................................................................................................................TAAGTAGGTGTGTAGTGACT.................................................	20	3	7	0.14	1	0	0	0	1	0	0
...........................................TTAGAATCTGAATCG................................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................CTGCAGTTTCTGTCATTCC..............	19	3	11	0.09	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................GCCTGCAGCTTCTGC....................	15	1	13	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TAGGTACTGCCATTCC..............	16	2	20	0.05	1	0	1	0	0	0	0
AAATGGGTTTAAGCTGCTA.......................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:17653407-17653656 +	dsi_27107	TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACACA--TGCAATATCTTAGACTTA--GCATATAGTGTA----------------AGAGAAGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-TTATATGCC--------------A---------------TATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG
droSec2	scaffold_9:424649-424891 +		TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACACA--TGCAATATCTTAGACTTA--GTG--TA---------------------AGAGATGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-TTATATGCC--------------A---------------TATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG
dm3	chr2R:17098546-17098797 +		TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACACA--TGCAATATCTTAAACTTA--GCATATAGTGTA----------------AGACAAGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-TTATATGCC-------AT-----A---------------TATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG
droEre2	scaffold_4845:11241136-11241388 +		TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACC-A--TGCAATATCCTAGACTTA--GTGTATAGTGTA----------------AGACAAGAGCTAATA-CTAGATGT---AAGTCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATACC-----------------------------------------------------------------------GCCCTTAT--ACC-------AT--ACCA---------------TATACT------------------A------TACACAC--ATGCGTCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG
droYak3	2R:12097467-12097718 -		TTTACCCAAA-TACCACGCTGCCTTACAAGGGAATCGAA--TGCAATATCTTAGACTTA--GCA--TAGTGTA----------------AGACAAGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGG-AT-----------------------------GATATC-----------------------------------------------------------------------GCC-CTATATACC-------AT--ACCA---------------TATACT------------------A------TACACAC--ATGCATCCA---------AACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG
droEug1	scf7180000409474:847546-847791 -		CTTACCCAAA-TGCCAGGCTGCCTTAAGAAGGAAACCCA--TGCAATATCGTAGACTTA--GCT--TAGGATA----------------AGACAAAAGCTAATA-CTAGACTT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CTTAGATGCAG--------ACACACACTC-------------------------------------------------------------AAGAGCTTGGGAT-----------------------------GACACC-----------------------------------------------------------------------ACC-TTTTATACC--------------A---------------AATACT------------------A------TACACAC--A----TCCA---------CACA------------------C--CACACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG
droBia1	scf7180000302143:1325417-1325666 -		CTTACCCTAA-TGCCAGGCTGCCTTACTGAGGAAACCCA--TGCAATATCGTAGAGTTA--GCT--TAGGATA----------------AGACGAAAGCTAATA-CTAGACTT---AAGCCG----CAAGTGCTTCGGA-TA-------AC-CCTAGACGCAG--------ACACAC-CTC-------------------------------------------------------------GAGAGCTTAA-------------------------------------------------------------------------------------------------------------ACC-TTATATACCGAATACCATATACCA---------------TATACT------------------A------TACACAC--A----TCCA--CA-----CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCCAAGACGGTAAGGTGGAGTTCGACAAG
droTak1	scf7180000410787:53244-53507 -		CTCACCCCAA-TGCCAGGCTGCCTTACTGAGGAAACCCA--TGCAATATCGTAGATTTA--GCT--TAGGATA----------------AG-CGAAAGCTAACA-CTAGACTT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CGTAGATGCAA--------AAACACACAC----------------------------------TCTATC---------------------GAGAGCTTGGGAC---------------------GCTAT---GATACC-----------------------------------------------------------------------ACC-TTATATACC-------ATAT---A---------------TATACT------------------A--CATATACACA------CATCCA--CA-----CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG
droEle1	scf7180000491232:287276-287532 -		TTAACCCGAT-TGCCAGGCTGCCTTACTAAGGAAACCAA--AGCAATATCATAGACTTA--GCG--TAGGATA----------------AGACAAAAGCTAATA-CTAGACTT---AGGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGACGCAA--------ACACACACTC-------------------------------------------------------------GAGAGCTTGGGAT-----------------GGTCGCT--ATA-----------------------------------------------------------------TA--------CAGCC-TTATATACC--------------A---------------AATACT------------------A------TACACAC-AATGCATCCA---------CACA----------------------CCACAGAGCTTCTGACCTCCGCGGACATCGAGGATGGTAAGGTGGAGTTCGACAAG
droRho1	scf7180000780219:67063-67318 +		TTAACCCGAA-TGCCAGGCTGCCTTACGGAGTAAACCCA--TGCAATATCGTAGACTTA--GCG--TAGGATA----------------AGACAAAAGCTAATA-CTAGACAT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-ACTAGATGCAA--------ACACACACTC-------------------------------------------------------------AAGAGCTTGGGAT-----------------GGTCGCA--ATA-----------------------------------------------------------------CA--------CAGCC-TTATATTCC--------------G---------------AATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTTCTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG
droFic1	scf7180000453811:181498-181756 -		TTGAAACCAAATGCCAGGCTGCCTTACGAAGGAAACCCA--TGCAATATCGTAGTTCTA--GCC--TAGGATA----------------AGACGAAAGCTAATA-CTAGAGTT---AAGCCG----CAAGTGCTTTGGAATA-------AC-CCCAGATGCGA--------ACACACACAC----------------------------------T----C---------------------GATAGCTTGGGAT-----------------A-TCGCT---------------------------------------------------------------------CCATATATATACAACC--TATATAC---------------G---------------TATACT------------------A------TACACAC--A----TCCA---------CACA----------------------CCACAGAGCTAATCACCTCCGCGGACATCGAGGACGGTAAGGTGGAGTTCGACAAG
droKik1	scf7180000302682:167931-168196 -		CTAACCCCAT-CGCCAGGCTGCCTTAAATAGGAAATCCA--TGCAATATCGTAGACTTA--GCT--TAGGATA-----AA--------G-AAAAGAAGCTAATA-CTAGACTT---AGGCCACCGCCAAGTGCTTTTGT-TATAAAATAACTACC----CCAC--------ACACACGCTC-------------------------------------------------------------AAAAGCTTGGGAT-----------------CT--GCTTAAAA-----------------------------------------------------------------CA--------CATAC-ATAAAAACC-------AAAT---A---------------TATACT------------------A------TACACAC--A----TCCA---------CACA----------------------CCGCAGAGCTACTGACCTCCGCGGACATCGAGGACGGTAAGGTCGAGTTCGACAAG
droAna3	scaffold_13266:4877570-4877860 +		TTAACACTAATCGCCAGTCTGCCTTACGGAGGAAACCGA--TGCAATATCGTAGAATTA--GGG--TAGCCTA----------------AGA--AATGCAACTA-CTAGACAT---AAACCG----CAAGTGCTTTGGA-TA-------AC-CCCCGATGCAA--------ATACACACAC----------------------------------GCC--ACATGATATATACTCTCTGAAGAAGAGCTTGGGTT-----------------GG-----------CCAGCAGCTTCTCAAAC------------------------------------------------------------------------------------CCATAAATTATA-AAACATTTACT------------------C------TAAACAC-------TCCA--TAAACTTCACA----------------------CAATAGAGCTTATTACTTCCGCCGACATTGAGGACGGTAAGGTGGAGTTCGACAAG
droBip1	scf7180000395751:676096-676391 +		CTAACACTAATCGCCAGTCTGCCTTAAGGAGGAAACCAA--TGCAATATCGTAGAATTATAGGG--TAGCCTA----------------AGAG--AAGCAAATA-CTAGAATT--TAATCCG----CAAGTGCTTTGGA-TA-------AC-CCCCGATGCAA--------ATACACACAC----------------------------------GCA---CATGAAGTATACTCTGTAAAGAAGAGCTTGGGAT-----------------------------GCCAGC-----------------------------------------------------------------------AGC-TTCCATAAA-------AA--ACCTTAAAATATAGAAACATGTACT------------------C------TAAACAC-------TCCA--TAAAATTCACA----------------------CAATAGAGCTTATTACTTCCGCCGACATTGAGGACGGTAAGGTGGAGTTCGACAAG
dp5	3:3568595-3568926 +		CTAACC------GCCACGCTGCCTTAAGGAGGAAACCAA-TTGCAATATCGTAGACTTA--CCC--TAGGAAAACTTAGT--------GATAGGAAAACTAATA-ATAGACGT--AAGGCCT----CAAGTGCTGCGGA-TA----------CGCAGATGCAGCGAAACTAACCCTAACACTAGACACGACTATTAACCCCCACCACACACACACGCT--C---------------------GAT-GTTAGGAATGGAATGAATGAATCAATGGTTGCGTA---GACACT------ACACCCAGACA------------------------------------------------------------------------------------------------------------CTGGTCCACACCC------------ACTAATCCATCCACATGAAACCCCCA----------------------TCACAGAGCAACTGACTTCCGCGGACATCCAGGATGGTAAGGTGGAGTTCGACAGG
droPer2	scaffold_2:3757288-3757619 +		CTAACC------GCCAGGCTGCCTTAAGGAGGAAACCAA-TTGCAATATCGTAGACTTA--CCC--TAGGAAAACTTAGT--------GATAGGAGAACTAATA-ATAGACGT--AAGGCCT----CAAGTGCTGCGGA-TA----------CGCAGATGCAGCGAAACTAACCCTAACACTAGACACGACTATTAACCCCCACCACACACACACGCT--C---------------------GAT-GTTAGGAATGGAATGAATGAATCAATGGTTGCGTA---GACACT------ACACCCAGACA------------------------------------------------------------------------------------------------------------CTGGTCCACACCC------------ACTAATCCATCCACATGAAACCCCCA----------------------TCACAGAGCAACTGACTTCCGCGGACATCCAGGATGGTAAGGTGGAGTTCGACAGG
droWil2	scf2_1100000004514:124219-124403 -		A------------------------------------------------------------------------------------------------ACTAGAA-CTAAAT-T---ATGCCT----TAAGTGCTTTATGAAA-------GC-CAGCTAAACAA--------ACACACACACAACAAA----------CCCA---CACACACACACACT--C---------------------G------------------------------------------------------CACACGCACA------------------------------------------------------------------------------------------------------------AAGAACAAAACAC------------T-----CAATCCAAGTTTAAT-CACA----------------------ATTTAGAGCTATTGACCTCCGCCGATATTGAGGATGGTAAGATCGAGTACGATAAT
droVir3	scaffold_12875:14264807-14264869 +		CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACC----------------------CCGAAGAGCTCCTGACCTCCGCGGACATTCAGGATGGCAAGGTTGAGTACGACAGG
droMoj3	scaffold_6496:9712205-9712500 +		TTTACC-AAA-TGC------GCCTTA--GATGAAACTAATTTGCAATATCTTAG--------CA--TAAGAAAACCTTTTCTAAACATGAAACAAAA-CTCGTATCTATATATAACATGCCA----CAAGTGCTTG-----------------CCACACACAA--------ACACACACCG-------------------------------------AC-----------------------CCAGCTCGTTA-------------------------------------------------------------------GCTGCGCTACCCAATTTATTGTAGCCTCTAT-------------GTATATGCA-------ATACA-CT---------------TACACG------------------A------AACACAC--ATACATTTA---------CACCAATTGCAACTTCTTTACCCTACACGAAGAGCTCCTGACCTCCGCCGACATTGAGGATGGCAAAATTGAGTATGACAAG
droGri2	scaffold_15245:14236503-14236762 +		TTTACCAAAA-TGC------GCCTTA--GATGAAACTAATTTGCAATATCTTAGTCTA----------GGAAT------------------------------T-TTTAATAT---AAA-TT----AAAGTGCTTG-----------------CTGAAAAAAA--------ACACACACTC-------------------------------------------------------------ACACAC------------------------------------------------------GTAGAGAGAGAGAGATCTGGTCTCGACAACGAATT------------------------TAC-TTATACACA-------AT-----T---------------TAAACAAAACACAATTACA-----CAA----AACC-AAAAC----TCCA---------TGTG-----CCACTTCTT--CC----CTGAAGAGCTCCTGACTTCCGCTGACATTGAGGATGGCAAAGTTGAGTTCGATAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACACA--TGCAATATCTTAGACTTA--GCATATAGTGTA----------------AGAGAAGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-TTATATGCC--------------A---------------TATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................ACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------G...................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGA..................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGCGGACATCGAAGACGGTAAGG..............	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------CACA----------------------CCACAGAGCTACTGACCTCCGCG.................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTT......................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGGACATCGAAGACGGTAAGG..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA----------------------CCACAGAGCTACTGACCTCCGCG.................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................TGTA----------------AGAGAAGAGCTAATA-CTAGATGT---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................CACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------CACA----------------------CCACAGAGCTACTGACCT......................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------CACA----------------------CCACAGAGCTACTGA.........................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACACA--TGCAATATCTTAGACTTA--GTG--TA---------------------AGAGATGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-TTATATGCC--------------A---------------TATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACCTCCGCGGACATCGAAGACGGT..................	28	1	2.00	2	1	1	0	0
...............................................ATCTTAGACTTA--GTG--TA---------------------AGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGACGGTAAGGTGGAGTT.......	23	1	1.00	1	0	0	1	0
................................................TCTTAGACTTA--GTG--TA---------------------AGAGATGAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGTAAGGTGGAGTTCGACA..	23	1	1.00	1	0	1	0	0
............................................................................................GATGAGCTAATA-CTAGATGT---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............................................ATATCTTAGACTTA--GTG--TA---------------------AGAGATGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0

dm3

TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACACA--TGCAATATCTTAAACTTA--GCATATAGTGTA----------------AGACAAGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-TTATATGCC-------AT-----A---------------TATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA---------CACA----------------------CCACAGAGCTACTGACC.......................................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATCGAAGACGGTAAGGT.............	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATATC-----------------------------------------------------------------------GCC-...................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GCTTTGGA-TA-------AC-CCTAGATGCA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTAAGGTGGAGTTC......	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTGACCTCCGCGGAC..............................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................C-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATAT...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAC--ATGCATCCA---------CACA----------------------CCACAGAGC...............................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AAGTGCTTTGGA-TA-------AC-CCTAG...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGACGGTAAGGTGGAGTTCGA....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGGAGTTCGACAAC	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTTACCCAAA-TACCACGCTGCCTTACAAAGGAAACC-A--TGCAATATCCTAGACTTA--GTGTATAGTGTA----------------AGACAAGAGCTAATA-CTAGATGT---AAGTCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATACC-----------------------------------------------------------------------GCCCTTAT--ACC-------AT--ACCA---------------TATACT------------------A------TACACAC--ATGCGTCCA---------CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................A---------------TATACT------------------A------TACACAC--ATGCGTCCA---------CACA----------------------CC......................................................	30	1	1.00	1	0	0	0	0	1	0	0
...................TGCCTTACAAAGGAAACC-A--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................................................TTA--GTGTATAGTGTA----------------AGACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.........................................................TA--GTGTATAGTGTA----------------AGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGTAAGGTGGAGTTC......	21	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................ACTC-------------------------------------------------------------AGGAGCTTGGGAT-----------------------------GATA................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTAAGGTGGAGTTCGACAA.	23	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTAAGGTGGAGTTCG.....	20	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------CCACAGAGCTACTGACCTCCG...................................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................ATCCTAGACTTA--GTGTATAGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TAATA-CTAGATGT---AAGTCG----CA................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATGGTAAGGTGGAGTTC......	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................AGTGCTTTGGA-TA-------AC-CCTAGATGC...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0

droYak3

TTTACCCAAA-TACCACGCTGCCTTACAAGGGAATCGAA--TGCAATATCTTAGACTTA--GCA--TAGTGTA----------------AGACAAGAGCTAATA-CTAGATGT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGATGCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGG-AT-----------------------------GATATC-----------------------------------------------------------------------GCC-CTATATACC-------AT--ACCA---------------TATACT------------------A------TACACAC--ATGCATCCA---------AACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGGACATCGAAGATGGTAAGGT.............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................GACTTA--GCA--TAGTGTA----------------AGACAAGAGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................CACTC-------------------------------------------------------------AGGAGCTTGG-AT-----------------------------GAT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................TCTTAGACTTA--GCA--TAGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATGGTAAGGTGGAGTTCGACA..	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATCGAAGATGGTAAGGTGGAGTTC......	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACTGACCTCCGCGGACATCG..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................TA--GCA--TAGTGTA----------------AGACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGCTACTGACCTCCGCGGACATC...........................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCAA--------ACACACACTC-------------------------------------------------------------AGGAGCTTGG-AT-----------------------------GAT.................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATCGAAGATGGTAAGGTGG...........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CTTACCCAAA-TGCCAGGCTGCCTTAAGAAGGAAACCCA--TGCAATATCGTAGACTTA--GCT--TAGGATA----------------AGACAAAAGCTAATA-CTAGACTT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CTTAGATGCAG--------ACACACACTC-------------------------------------------------------------AAGAGCTTGGGAT-----------------------------GACACC-----------------------------------------------------------------------ACC-TTTTATACC--------------A---------------AATACT------------------A------TACACAC--A----TCCA---------CACA------------------C--CACACAGAGCTACTGACCTCCGCGGACATCGAAGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTTACCCTAA-TGCCAGGCTGCCTTACTGAGGAAACCCA--TGCAATATCGTAGAGTTA--GCT--TAGGATA----------------AGACGAAAGCTAATA-CTAGACTT---AAGCCG----CAAGTGCTTCGGA-TA-------AC-CCTAGACGCAG--------ACACAC-CTC-------------------------------------------------------------GAGAGCTTAA-------------------------------------------------------------------------------------------------------------ACC-TTATATACCGAATACCATATACCA---------------TATACT------------------A------TACACAC--A----TCCA--CA-----CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCCAAGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTCACCCCAA-TGCCAGGCTGCCTTACTGAGGAAACCCA--TGCAATATCGTAGATTTA--GCT--TAGGATA----------------AG-CGAAAGCTAACA-CTAGACTT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-CGTAGATGCAA--------AAACACACAC----------------------------------TCTATC---------------------GAGAGCTTGGGAC---------------------GCTAT---GATACC-----------------------------------------------------------------------ACC-TTATATACC-------ATAT---A---------------TATACT------------------A--CATATACACA------CATCCA--CA-----CACA----------------------CCACAGAGCTACTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTAACCCGAT-TGCCAGGCTGCCTTACTAAGGAAACCAA--AGCAATATCATAGACTTA--GCG--TAGGATA----------------AGACAAAAGCTAATA-CTAGACTT---AGGCCG----CAAGTGCTTTGGA-TA-------AC-CCTAGACGCAA--------ACACACACTC-------------------------------------------------------------GAGAGCTTGGGAT-----------------GGTCGCT--ATA-----------------------------------------------------------------TA--------CAGCC-TTATATACC--------------A---------------AATACT------------------A------TACACAC-AATGCATCCA---------CACA----------------------CCACAGAGCTTCTGACCTCCGCGGACATCGAGGATGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTAACCCGAA-TGCCAGGCTGCCTTACGGAGTAAACCCA--TGCAATATCGTAGACTTA--GCG--TAGGATA----------------AGACAAAAGCTAATA-CTAGACAT---AAGCCG----CAAGTGCTTTGGA-TA-------AC-ACTAGATGCAA--------ACACACACTC-------------------------------------------------------------AAGAGCTTGGGAT-----------------GGTCGCA--ATA-----------------------------------------------------------------CA--------CAGCC-TTATATTCC--------------G---------------AATACT------------------A------TACACAC--ATGCATCCA---------CACA----------------------CCACAGAGCTTCTGACCTCCGCGGACATCGAAGATGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTGAAACCAAATGCCAGGCTGCCTTACGAAGGAAACCCA--TGCAATATCGTAGTTCTA--GCC--TAGGATA----------------AGACGAAAGCTAATA-CTAGAGTT---AAGCCG----CAAGTGCTTTGGAATA-------AC-CCCAGATGCGA--------ACACACACAC----------------------------------T----C---------------------GATAGCTTGGGAT-----------------A-TCGCT---------------------------------------------------------------------CCATATATATACAACC--TATATAC---------------G---------------TATACT------------------A------TACACAC--A----TCCA---------CACA----------------------CCACAGAGCTAATCACCTCCGCGGACATCGAGGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTAACCCCAT-CGCCAGGCTGCCTTAAATAGGAAATCCA--TGCAATATCGTAGACTTA--GCT--TAGGATA-----AA--------G-AAAAGAAGCTAATA-CTAGACTT---AGGCCACCGCCAAGTGCTTTTGT-TATAAAATAACTACC----CCAC--------ACACACGCTC-------------------------------------------------------------AAAAGCTTGGGAT-----------------CT--GCTTAAAA-----------------------------------------------------------------CA--------CATAC-ATAAAAACC-------AAAT---A---------------TATACT------------------A------TACACAC--A----TCCA---------CACA----------------------CCGCAGAGCTACTGACCTCCGCGGACATCGAGGACGGTAAGGTCGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTAACACTAATCGCCAGTCTGCCTTACGGAGGAAACCGA--TGCAATATCGTAGAATTA--GGG--TAGCCTA----------------AGA--AATGCAACTA-CTAGACAT---AAACCG----CAAGTGCTTTGGA-TA-------AC-CCCCGATGCAA--------ATACACACAC----------------------------------GCC--ACATGATATATACTCTCTGAAGAAGAGCTTGGGTT-----------------GG-----------CCAGCAGCTTCTCAAAC------------------------------------------------------------------------------------CCATAAATTATA-AAACATTTACT------------------C------TAAACAC-------TCCA--TAAACTTCACA----------------------CAATAGAGCTTATTACTTCCGCCGACATTGAGGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............GCCAGTCTGCCTTACGGAGGAAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................AAGTGCTTTGGA-TA-------AC-CCCC....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGGTAAGGTGGAGTTCGACAA.	24	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGTGGAGTTCGACAA.	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................ACTA-CTAGACAT---AAACCG----CA................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................AGACAT---AAACCG----CAAGTGCTTTGGA-....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGACGGTAAGGTGGAGTTC......	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................GAAGAGCTTGGGTT-----------------GG-----------CCAGCA.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................T---AAACCG----CAAGTGCTTTGGA-TA-------AC-CCC.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............GCCAGTCTGCCTTACGGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................G----CAAGTGCTTTGGA-TA-------AC-CCCCGATG................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTAAGGTGGAGTTCGACA..	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTAAGGTGGAGTTCGACA..	22	1	1.00	1	0	0	0	0	0	1
...............AGTCTGCCTTACGGAGGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................AGAGCTTGGGTT-----------------GG-----------CCAGCAGCTTCT.......................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........ATCGCCAGTCTGCCTTACGGAGGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTACT------------------C------TAAACAC-------TCCA--TAAAC....................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTTATTACTTCCGCCGACATT...........................	25	1	1.00	1	1	0	0	0	0	0
...............................................ATCGTAGAATTA--GGG--TAGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........AATCGCCAGTCTGCCTTACGGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................CAC----------------------------------GCC--ACATGATATATACTCTCTGAAG..............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGACATTGAGGACGGTAAGGTGGA..........	27	1	1.00	1	1	0	0	0	0	0
............GCCAGTCTGCCTTACGGAGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................................TCGTAGAATTA--GGG--TAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................GAAGAGCTTGGGTT-----------------GG-----------CCAGC..............................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..AACACTAATCGCCAGTCTGCCTTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........CGCCAGTCTGCCTTACGGAGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGGTAAGGTGGAGTTCGAC...	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................................CG----CAAGTGCTTTGGA-TA-------AC-CCCCGATGCA..............................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................CTGAAGAAGAGCTTGGGT..................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................GAAGAGCTTGGGTT-----------------GG-----------CCAGCAGCT..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................TA-CTAGACAT---AAACCG----CAAGTGCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................AAGAAGAGCTTGGGTT-----------------GG-----------CCAGCA.............................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droBip1

CTAACACTAATCGCCAGTCTGCCTTAAGGAGGAAACCAA--TGCAATATCGTAGAATTATAGGG--TAGCCTA----------------AGAG--AAGCAAATA-CTAGAATT--TAATCCG----CAAGTGCTTTGGA-TA-------AC-CCCCGATGCAA--------ATACACACAC----------------------------------GCA---CATGAAGTATACTCTGTAAAGAAGAGCTTGGGAT-----------------------------GCCAGC-----------------------------------------------------------------------AGC-TTCCATAAA-------AA--ACCTTAAAATATAGAAACATGTACT------------------C------TAAACAC-------TCCA--TAAAATTCACA----------------------CAATAGAGCTTATTACTTCCGCCGACATTGAGGACGGTAAGGTGGAGTTCGACAAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTAACC------GCCACGCTGCCTTAAGGAGGAAACCAA-TTGCAATATCGTAGACTTA--CCC--TAGGAAAACTTAGT--------GATAGGAAAACTAATA-ATAGACGT--AAGGCCT----CAAGTGCTGCGGA-TA----------CGCAGATGCAGCGAAACTAACCCTAACACTAGACACGACTATTAACCCCCACCACACACACACGCT--C---------------------GAT-GTTAGGAATGGAATGAATGAATCAATGGTTGCGTA---GACACT------ACACCCAGACA------------------------------------------------------------------------------------------------------------CTGGTCCACACCC------------ACTAATCCATCCACATGAAACCCCCA----------------------TCACAGAGCAACTGACTTCCGCGGACATCCAGGATGGTAAGGTGGAGTTCGACAGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................GATGCAGCGAAACTAACCCTAACAC...........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TAACCCTAACACTAGACACGACTA...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGGTAAGGTGGAGTTC......	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGGTAAGGTGGAG.........	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................ACGCT--C---------------------GAT-GTTAGGAATGGAATGAA.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CCCAGACA------------------------------------------------------------------------------------------------------------CTGGTCCACACCC------------A.......................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TAATA-ATAGACGT--AAGGCCT----C.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AAACTAACCCTAACACTAGACACG...................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACGCT--C---------------------GAT-GTTAGGAATGGAA.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATCCAGGATGGTA.................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGCGTA---GACACT------ACACCCAGACA------------------------------------------------------------------------------------------------------------C................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCAGGATGGTAAGGTG............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CT------ACACCCAGACA------------------------------------------------------------------------------------------------------------CTGGTCCACACCC------------........................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGGTAAGGTGGAGTTCGAC...	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

CTAACC------GCCAGGCTGCCTTAAGGAGGAAACCAA-TTGCAATATCGTAGACTTA--CCC--TAGGAAAACTTAGT--------GATAGGAGAACTAATA-ATAGACGT--AAGGCCT----CAAGTGCTGCGGA-TA----------CGCAGATGCAGCGAAACTAACCCTAACACTAGACACGACTATTAACCCCCACCACACACACACGCT--C---------------------GAT-GTTAGGAATGGAATGAATGAATCAATGGTTGCGTA---GACACT------ACACCCAGACA------------------------------------------------------------------------------------------------------------CTGGTCCACACCC------------ACTAATCCATCCACATGAAACCCCCA----------------------TCACAGAGCAACTGACTTCCGCGGACATCCAGGATGGTAAGGTGGAGTTCGACAGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................GAT-GTTAGGAATGGAATGAATG.......................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATCCAGGATGGTAAGGTGGAGT........	26	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGACTTCCGCGGACATCCAG........................	25	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGTGGAGTTCGACA..	19	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................GCT--C---------------------GAT-GTTAGGAATGGAA.............................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................GCT--C---------------------GAT-GTTAGGAATGGAAT............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................CACGCT--C---------------------GAT-GTTAGGAATGGAA.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTAAGGTGGAGTTCG.....	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................CGCT--C---------------------GAT-GTTAGGAATGGAAT............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................AT-GTTAGGAATGGAATGAAT........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATCCATCCACATGAAA....................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GAT-GTTAGGAATGGAATGAATGAA.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTAAGGTGGAGTT.......	18	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGTAAGGTGGAGTTC......	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATGGTAAGGTGGAGTTCGACA..	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CCACACACACACGCT--C---------------------GAT-GTT.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTAAGGTGGAGTTC......	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................GAT-GTTAGGAATGGAATGAATGAATCA..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTCCACACCC------------ACTAATCCATCCAC..........................................................................................	27	1	1.00	1	0	1	0	0	0	0
..........................................GCAATATCGTAGACTTA--CCC--TAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droWil2

A------------------------------------------------------------------------------------------------ACTAGAA-CTAAAT-T---ATGCCT----TAAGTGCTTTATGAAA-------GC-CAGCTAAACAA--------ACACACACACAACAAA----------CCCA---CACACACACACACT--C---------------------G------------------------------------------------------CACACGCACA------------------------------------------------------------------------------------------------------------AAGAACAAAACAC------------T-----CAATCCAAGTTTAAT-CACA----------------------ATTTAGAGCTATTGACCTCCGCCGATATTGAGGATGGTAAGATCGAGTACGATAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................CAGCTAAACAA--------ACACACACACAACA.......................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGATGGTAAGATCGAGTAC......	24	1	2.00	2	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGATGGTAAGATCGAGTAC......	23	1	2.00	2	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAGGATGGTAAGATCG...........	21	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACAC------------T-----CAATCCAAGTTTAAT-C.................................................................................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGAGCTATTGACCTCCGCCGA...............................	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGATGGTAAGATCGAGTACG.....	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................CACACACT--C---------------------G------------------------------------------------------CACACGCACA------------------------------------------------------------------------------------------------------------AA...............................................................................................................................	22	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................A----------CCCA---CACACACACACACT--C---------------------G------------------------------------------------------CACACGCA...............................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................A---CACACACACACACT--C---------------------G------------------------------------------------------CACACGCAC..............................................................................................................................................................................................................................................	26	3	0.33	1	0	0	1	0	0

droVir3

CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACC----------------------CCGAAGAGCTCCTGACCTCCGCGGACATTCAGGATGGCAAGGTTGAGTACGACAGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCCTGACCTCCGCGGACATTC..........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGAGCTCCTGACCTCCGCGGACA.............................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCTCCTGACCTCCGCGGACA.............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTCCGCGGACATTCA.........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTCCTGACCTCCGCGGA...............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGGACATTCAGGAT.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATGGCAAGGTTGAGTACGACAG.	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTCCTGACCTCCGCGGACA.............................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGGCAAGGTTGAGTACG.....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

TTTACC-AAA-TGC------GCCTTA--GATGAAACTAATTTGCAATATCTTAG--------CA--TAAGAAAACCTTTTCTAAACATGAAACAAAA-CTCGTATCTATATATAACATGCCA----CAAGTGCTTG-----------------CCACACACAA--------ACACACACCG-------------------------------------AC-----------------------CCAGCTCGTTA-------------------------------------------------------------------GCTGCGCTACCCAATTTATTGTAGCCTCTAT-------------GTATATGCA-------ATACA-CT---------------TACACG------------------A------AACACAC--ATACATTTA---------CACCAATTGCAACTTCTTTACCCTACACGAAGAGCTCCTGACCTCCGCCGACATTGAGGATGGCAAAATTGAGTATGACAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTACACGAAGAGCTCCTGACC.......................................	25	1	3.00	3	1	0	0	0	2	0
.......AAA-TGC------GCCTTA--GATGAAACTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.........A-TGC------GCCTTA--GATGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..............................................................................................AAA-CTCGTATCTATATATAACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAACTTCTTTACCCTACACG.....................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACACGAAGAGCTCCTGAC........................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTCCTGACCTCCGCC.................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CG------------------A------AACACAC--ATACATTTA---------CACC..............................................................................	23	1	1.00	1	1	0	0	0	0	0
....CC-AAA-TGC------GCCTTA--GATGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................ATATCTTAG--------CA--TAAGAAAACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAACTTCTTTACCCTACACGAA...................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................TAACATGCCA----CAAGTGCTTG-----------------C......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................CTTTTCTAAACATGAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACGAAGAGCTCCTGACCT......................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................ACATGAAACAAAA-CTCGTATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ATATGCA-------ATACA-CT---------------TACACG------------------A------AACA.........................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAACTTCTTTACCCTAC........................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATTGTAGCCTCTAT-------------GTATATGC...........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................GCTCGTTA-------------------------------------------------------------------GCTGCGCTACCCA..................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAC--ATACATTTA---------CACCAATTGCA.......................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATTGTAGCCTCTAT-------------GTATATGCA-------...................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGATGGCAAAATTG...........	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................G-------------------------------------AC-----------------------CCAGCTCGTTA-------------------------------------------------------------------GCTGCGCTACC....................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTTCTTTACCCTACACG.....................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTCCTGACCTCCGCCG................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................GAAACAAAA-CTCGTATCTATATATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTACCCAATTTATTGTAGCCTCTA.................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................G-------------------------------------AC-----------------------CCAGCTCGTTA-------------------------------------------------------------------GCTGCGC........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGACATTGAGGATGGC..................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................G-------------------------------------AC-----------------------CCAGCTCGTTA-------------------------------------------------------------------GCTGCGCTACCCA..................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................CCAGCTCGTTA-------------------------------------------------------------------GCTGCGCTACC....................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGACATTGAGGATGGCA.................	22	1	1.00	1	1	0	0	0	0	0
.........A-TGC------GCCTTA--GATGAAACTAATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

TTTACCAAAA-TGC------GCCTTA--GATGAAACTAATTTGCAATATCTTAGTCTA----------GGAAT------------------------------T-TTTAATAT---AAA-TT----AAAGTGCTTG-----------------CTGAAAAAAA--------ACACACACTC-------------------------------------------------------------ACACAC------------------------------------------------------GTAGAGAGAGAGAGATCTGGTCTCGACAACGAATT------------------------TAC-TTATACACA-------AT-----T---------------TAAACAAAACACAATTACA-----CAA----AACC-AAAAC----TCCA---------TGTG-----CCACTTCTT--CC----CTGAAGAGCTCCTGACTTCCGCTGACATTGAGGATGGCAAAGTTGAGTTCGATAAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................AATATCTTAGTCTA----------GGAAT------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
.......AAA-TGC------GCCTTA--GATGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0

-11.3	-11.0	-10.9	-10.6

dsi_27107

2r:17653457-17653606 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads