dsi_27090

CDS [2r_7823953_7824037_-]; exon [2r_7823953_7824067_-]; intron [2r_7823282_7823952_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGCCCCTCAGAACCGAGAGGTAATTTGGGGCATATGGCCAATAAAAACAGCAAGTGAATCACCCAGGCAAAAGGTTAACCGAATTGTTACCAACTGATAAGCAGTGCACCGGATTAATTATTGTTGCGAGCAAGTGTGTCACACAGTTCGACGCAAATATGCGGCTACAAGTTGGCTATATCTTATCGGCCAGCGTTTTGTTGTGGTCTGCGACTCCTC ************************************************.(((((((((((.....)))..........(((.((..((((....(((((..((....))...)))))......))))..))..))).)))))))).....(((.((..(((..((((((.........))))))....))).)).)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR618934 dsim w501 ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
..ACAGTGAGATCCGTGTGGCC....................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................GTTGGCTATACGGTATCGGC.............................	20	3	4	0.25	1	0	1	0	0	0
.....................................................................................................AAGGTTAACCGAATAGG....................................................................................................................................	17	2	9	0.22	2	0	0	2	0	0
............................................................................................................................................................................................................GGTTATATTTTATCGGCC............................	18	2	13	0.08	1	0	0	0	1	0
..........................................................................................................TAACCGGATTGGAACCAAC.............................................................................................................................	19	3	18	0.06	1	0	1	0	0	0
............................................................................................................................................................GCTAGCACGGGTGTCACA............................................................................	18	3	20	0.05	1	0	0	1	0	0
.....................................................................................................GAGGTTAACCGAATTGGGA..................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

GCTGTCACTCTAGGCACACCGGGTCGTCGGTTCGGGGAGTCTTGGCTCTCCATTAAACCCCGTATACCGGTTATTTTTGTCGTTCACTTAGTGGGTCCGTTTTCCAATTGGCTTAACAATGGTTGACTATTCGTCACGTGGCCTAATTAATAACAACGCTCGTTCACACAGTGTGTCAAGCTGCGTTTATACGCCGATGTTCAACCGATATAGAATAGCCGGTCGCAAAACAACACCAGACGCTGAGGAG ************************************************.(((((((((((.....)))..........(((.((..((((....(((((..((....))...)))))......))))..))..))).)))))))).....(((.((..(((..((((((.........))))))....))).)).)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	GSM343915 embryo	M024 male body
..........................................................................................................................................................................................................................CCGGTTGCAAAACAATAC..............	18	2	9	0.11	1	1	0	0
................................CGGGGGGTCTTGGCTTTC........................................................................................................................................................................................................	18	2	9	0.11	1	0	1	0
..............................CTCGGGGATTCCTGGCTCT.........................................................................................................................................................................................................	19	3	13	0.08	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:7823753-7824002 -	dsi_27090	CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGCCCCTCAGAACCGAGAGGTAATTTGGGG-----CATATGG--------------------CC-------------AATAAA----AACAGCAAGTGAATCACCCA-----------------G-GCA-AAAG-GTTAAC-CGAAT---TG---TTACCAACT-----GATAAGCAGT----------------------GCACCG------------------------------GATTAATTATTGTTGC-----------------------------------GAGCA----AGTGTGTCACACAGTTCGACGCAAATATGCGG-----C-TACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---GTGGTCTG----------------------C----GACTCCTC
droSec2	scaffold_1:4675249-4675511 -		CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGCCCCTCAGAACCGAGAGGTAATTTAGGG-----CATATGGCTTTC-GAA--------AA-CC-------------AATGAA----AACAGCAAGTGAATCACCCA-----------------G-GCA-AAAG-GTTAAC-CGAAT---TG---TTACCAACTGA----ATAAGCAGT----------------------GCACCGGGA----------------------------TTTAGGTATTGTTGC-----------------------------------GAGCG----AGTGTGTCACACAGTTCGACGCAAATATGCGG-----C-TACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---GTGGTCTG----------------------C----GATTCCTC
dm3	chr2R:7106378-7106637 -		CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGTCTCTCAGAACCGAGAGGTAATTTAGGG-----CATATGGCTTTA-GAA--------AA-CG-------------AATAAA----AACAGCGAGTGAATCACCCT-----------------G-GCA-AAAG-GGTAAC-CGAAT---TG---TTACCAACT-----GATAAGCAGT----------------------GCACCG------------------------------GATTAATTATTGTTGC-----------------------------------GAGCG----AGTGTGTCACACAGTTCGACGCAAAAATGCGG-----C-CACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---ATGGTCTG----------------------C----GACTCCTC
droEre2	scaffold_4845:18688720-18688957 +		CGACAGCGAGATCCGTGTGGCCCAGCAGCCAAGTCCCTCAGAACCGAGAGGTAATCAAGGGATATG------GGTTGTGGAT--------AG-CC-------------AACGAA----AGCAGCGAGTGAATCACGCA-----------------C-GGA-AAAG-GGCAGC-CAACT-T-TG---TTACCAACT-----GATAAGCAGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------TAGCG----AATGTGTC--A--------------------------C-TACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---ATGGTCTC----------------------G----GCCTGCTC
droYak3	2R:2037205-2037461 +		CGACAGTGAGATCCGAGTGGCTCAACAGCCAAGTCCCTCAGAACCGAGAGGTAATCAAGGGATATG------GGTTTC-GAA--------AA-CT-------------AACGAA----AACAGCGAGTGAATCACCCA-----------------C-GCA-AAGG-AGCAGC-CGACT---TG---TTACCAACT-----GATAAGAGGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------GAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGA-----C-TACAGGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---GTGGTCTG----------------------G----GCCTCCTC
droEug1	scf7180000409462:1398412-1398672 +		TGATAGTGAAATACGCGTGGCCCAGCAGCCAAGTCCCTCAGAACCAAGAGGTAAATTAGGGATATA------GTTTTA-GAA--------AAGCA-------------AATCAA----AACACTATGTGAATCACCCA-----------------T-GGA-CATT-GGTAAC-TGACT---TG---TTACCAACT-----GATAAGCATT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------TAGCGAGAGTGTGTGTC--ACAGTTCGACACAAATATGCGA-----C-TACAAGTTGGCT------ATATCTTATCGGCTA----GCGTTT-TGTT---GTGGTCT-----------------------G----GTCTCCTC
droBia1	scf7180000301754:1188544-1188797 +		TGATAGTGAGATTCGCGTGGCCCAGCAGCCCAGTCCCTCAGAACCCAGAGGTAAATGGGCGATATA------GTTG-T-GAA--------AACCA-------------AATAAA----AACTTTGTGTGATTCACCCT-----------------T-GGA-CAAT-GGTAAC-TGCCT---TG---TTACCAACT-----GATAAGCGGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------TAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGA-----C-TACAAGTTGGCT------ATATCTTATCTG-------GCGTTT-TGTT---GTGGTCTC----------------------G----GTCTCCTC
droTak1	scf7180000415313:152700-152953 +		TGATAGTGAGATTCGCGTGGCCCAGCAGCCAAGTCCCTCAGAACCAAGAGGTAAATTAGAGAAATA------GTTT-C-GAA--------TAGAA-------------AATAAA----AACACTGTGTGAATCACCCT-----------------C-GGA-CAAT-GGTAAC-TGCCC---TG---TTACCAACT-----GATAAGCGGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CATCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGA-----C-TACAAGTTGGCT------ATATCTTATC---TA----GCGTTT-TGTT---GTGGTCTC----------------------G----GCCTCCTC
droEle1	scf7180000491214:2542745-2543008 -		TGATAGTGAGATTCGTGTGGCCCAGCAGCCAAGCCCCTCAGAGCCCAGAGGTAAATTTGGATTA--TATATAGTTT-C-GAA--------TT-AA-------------AATGAA----AACACTGAGTGAATCACCTG-----------------C-GGA-CAAT-GGTAAC-TGCCT---TG---TTACCAACT-----GATAAGCGCT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGG-----C-AACAAGTCGGCT------ATATCTTATCGGCTA----GCGTTT-TGTT---GTGGTCTC----------------------GATCTCCTTCCTC
droRho1	scf7180000766880:59623-59892 +		TGATAGTGAGATCCGCGTGGCCCAGCAGCCAAATCCCTCAGAACCGAGAGGTAAATTGGGGAAATA------GTTT-C-GAAATAAGTTT-ACAA-------------AATAAG----AACACTTAATGAATCACCCA-----------------T-GGA-CAGT-GGTAAC-TGCCT---TG---TTACCAACT-----GATAAGAACT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGG-----C-AACAAGTTGGCTATATCTATATCTTATCGGCTG----GCGTTT-TGTT---GTGGTCTC----------------------G----GTCTCCTC
droFic1	scf7180000453773:47847-48102 -		TGATAGTGAGATTCGCGTGGCCCAGCAGCCAAGCCCCACAGAACCTAGAGGTAAATTGGGGATATT------GTTTTG--AA-------ATA-GA-------------AATGAA----AACACAGCGTGATTCATTCT-----------------C-AAA-CAAC-GGTAAA-TGTC----TG---TTACCAACT-----GATAAGCGCT----------------------GCACCG------------------------------GATTATTTGTTATTGC-----------------------------------TAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGG-----C-TACAAGTTGGCT------ATATCTTATCGGCTA----TCGTTT-TGTT---GTGGTCTC----------------------G----GTCCCCTC
droKik1	scf7180000302355:258125-258391 -		TGATAGTGAGATTCGGGTGGCCCAGCAGCCGAATCCCACAGAACCAAGAGGTAAATAAATC-----TATTTAGATTCT-GGA--------AA-AG-------------AAAGAA----AATA-CAAGTGATTCACCTG-----------------C-GGA-CAAT-GGCAAC-TAACC-TGTG---TTACCCACT-----GATAACGATT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CAGAG--AGAGTGTGTC--ACAGTTCGACGCCAATGTGTGG-----CCCACAAGTTGGCT------ATATCTTATCGGCTGGTTGGTATTC-TGTT---GTGGTCCC---------------------GG----GACACTTC
droAna3	scaffold_13266:818377-818565 -		CGATAGCGAAATTCGCGTGGCCCAGCAGCCGAGTTCCTCGGAGCCAAGAGGTAAAAATAT-----------------G--AA-------TAA-AA-------------AATGAA----AACATAGTGTGATTCACCCG-----------------C-GGA-CATG-GGTAAA-AAACT---TG---TTACCAACT-----GATAAGCAAT----------------------GCACTG------------------------------GATTAATTTATATTGG-----------------------------------CTGGG----AGTGTGTC--ATAGTTCGACATATATACAC-------------------------------------------------------------------------------------------------------
droBip1	scf7180000396730:1823904-1824096 -		CGATAGCGAAATTCGCGTGGCCCAGCAGCCAAGTCCCACAGAGCCAAGAGGTAACAATATTA-----------TTT-------------AAA-AT-------------AATGAA----AACATTGTGTGATTCACCCG-----------------C-GGA-CATT-GGTAAC-AAACC---TG---TTACCAACT-----GATAAGCAAT----------------------GCACTG------------------------------GATTAATTTATATTGG-----------------------------------CTGGG----AGTGTGTC--ATAGTTCGACATAAATACACAG-----------------------------------------------------------------------------------------------------
dp5	3:18662958-18663291 +		CGACAGCGAAATACGCGTGGCACAGCAGCCAAATGCCACAGAACCCAGAGGTAGGTAGATGATGA-AATGTAA--------C------------C-AAG--------AAATATCAACAA---ATACATGAATCACC-A-----------------T-GGA-CATT-GGTACA-ATTTT---TA---CTAAC---CGAACTGATAAGTGGTTTTGCGCCTGTGTTCGCCAG--------------------------CCGCTGCATTTGGATTAATTGTTACGGCGTTCACATGGTCTGTGTGTGGGTGTTGTGTTGTGGTA----------GTGTT--ACTGTTCAAAG-AAATATGCGA-----C-ATAAAATTAGCT------ATATCTTATCAGCAA----AAGTTT-TGTT---GTGGTATCATTATGGCCAATGGCGTCCC-G-GT--TACGCCTG
droPer2	scaffold_34:609721-610055 +		CGACAGCGAAATACGCGTGGCACAGCAGCCAAATGCCACGGAACCCAGAGGTAGGTAAATGATGA-AATGTAA--------C------------C-AAG--------AAATATCAACAA---ATACATGAATCACC-A-----------------T-GGA-CATT-GGTACA-A---TTTTTA---CTAAC---TGAACTGATAAGTGGTTTTGCGCCTGTGTTCGCCAG--------------------------CCGCTGCATTTGGATTAATTGTTACGGCGTTCATATGGTCTGTGTGTGCGTGTTGTGTTGTGGTA----------GTGTT--ACTGTTCAAAG-AAATATGCGA-----C-ATAAAATTAGCT------ATATCTTATCAGCAA----AAGTTTTTGTT---GTGGTATCATTATGGCCAATGGCGTCCC-G-GT--TACGCCTG
droWil2	scf2_1100000004510:3492469-3492746 -		TGATAGCGAAATCCGTGTGGCTCAACAATCCTCAAATACAGAGCCTAGAGGTAAATTTTT-----------------C-TA--------TAA-ATATTG--CAAATTAG-----------------GTTTAATATTTTGGTCAAATGTTAGTCGAATGAA-TCA---TT-AA-A-------TA---CTTCTAACT-----TATCAGTTG--------------------GCTGCAA----------------------------TTCGGATTAGTTGCTATTGG--------------AGTGTGGGTA-----------CTGTG----TGTGTGTC--ATAGT-GGTAACAAATATT-----------CCCAATTGGCT------ATATCTTATCAGTCAAT--TTGTTT-TGTT---GTGCTTTGTTTATGGTCGTTGT-------------TGTAGTCC
droVir3	scaffold_12823:1236721-1237016 +	dvi_2946	TGACAGTGAAATACGCGTGGCTCAAACTACCAATGAAGCCGAACCTCGAGGTAAACTCTAGCCCAA-----TATATTG-AAA--------TT-CC-------------GACAAA----AAACTCACATGAATCATG----------------------AC-AAACGGTTAAT-GTTTT---TT---TTAGTAACT-----GATAATTATT----------------------CCAGTGGTATAGGTGTTGCTGTAAACGACACAACTGGATTAATTGCCAGAGGGT--------------G------------GTGTGGCGAGG----TGTGTGTC--ATACGTCCATA---------------------------TCC------ATATCTTATCAGCAG----CTGTTC-TGCTGTTTTGGTTT---TATGGCCGTCGT-TTGTC-G-ATTCGCCCTATC
droMoj3	scaffold_6496:672196-672460 -		CGATAGCGAAATACGTGTGGCTCAAACAAGCACGGCTAACGAACCAAGAGGTAATGTTTTGG-----------TTT-A-G-----------C-AC--AGTTAAAATCAAATAT---------CCAATTGGAATGCT-A-----------------A-TGATTCAT-GTT-TAATATT----TCTTATTAGTAACT-----GATAATTTCT-----------GCTAGTTGT--------------------------ATGTAACAATTGGATTATTAGGTCTGCTGTCTGCCTG---------------TATTTGTGTTTTAGTG----TGTGTGTC--A-----------------GCAG-----G-TACAAGCTGGCC------GTATCTTATCAGCAA----CTGTTTCTGTT---TTGGTTT------------------------------------
droGri2	scaffold_15245:5988641-5988903 -		TGACAGTGAAATACGAGTGGCCCAAACACCCAGTCCCACCGAACCCCGAGGTAAATAAACTT--------------TA-CG--------AAA-ACAATG--AAATTCAAAC------TATTTTTGGATGAATCACTTG-----------------T-GAA-GC------ACT-TAATG-T-TT---TTAGTGCCT-----GATAAATGTT----------------------TCAATG------------------------------GTGTAGGTGTAA---A-----------------------------------CGATG----AATAT-----------------ATACAAACAGCACAGG-TACACATTGTCCCTATCAGTATCTTATCAGTAC----CCATAC-GATG---GTGCTTT---TATGACCGTTTC---ACCAGC----GCCATTTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGCCCCTCAGAACCGAGAGGTAATTTGGGG-----CATATGG--------------------CC-------------AATAAA----AACAGCAAGTGAATCACCCA-----------------G-GCA-AAAG-GTTAAC-CGAAT---TG---TTACCAACT-----GATAAGCAGT----------------------GCACCG------------------------------GATTAATTATTGTTGC-----------------------------------GAGCA----AGTGTGTCACACAGTTCGACGCAAATATGCGG-----C-TACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---GTGGTCTG----------------------C----GACTCCTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..ACAGTGAGATCCGTGTGGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGCCCCTCAGAACCGAGAGGTAATTTAGGG-----CATATGGCTTTC-GAA--------AA-CC-------------AATGAA----AACAGCAAGTGAATCACCCA-----------------G-GCA-AAAG-GTTAAC-CGAAT---TG---TTACCAACTGA----ATAAGCAGT----------------------GCACCGGGA----------------------------TTTAGGTATTGTTGC-----------------------------------GAGCG----AGTGTGTCACACAGTTCGACGCAAATATGCGG-----C-TACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---GTGGTCTG----------------------C----GATTCCTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................AAATATGCGG-----C-TACAAGT.......................................................................................	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................ATATGCGG-----C-TACAAGTTGGCT------............................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................ATATGCGG-----C-TACAAGTTGG....................................................................................	19	1	1.00	1	0	0	1	0

dm3

CGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGTCTCTCAGAACCGAGAGGTAATTTAGGG-----CATATGGCTTTA-GAA--------AA-CG-------------AATAAA----AACAGCGAGTGAATCACCCT-----------------G-GCA-AAAG-GGTAAC-CGAAT---TG---TTACCAACT-----GATAAGCAGT----------------------GCACCG------------------------------GATTAATTATTGTTGC-----------------------------------GAGCG----AGTGTGTCACACAGTTCGACGCAAAAATGCGG-----C-CACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---ATGGTCTG----------------------C----GACTCCTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGTT---ATGGTCTG----------------------C----GACTCCT.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GACAGTGAGATCCGTGTGGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCA----GCGTTT-TGTT---ATGGTCTG----------------------.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGAACCGAGAGGTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CTCAGAACCGAGAGGTAATTT....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GACAGTGAGATCCGTGTGGCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GACAGTGAGATCCGTGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AACT-----GATAAGCAGT----------------------GCACCG------------------------------G................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................T------ATATCTTATCGGCCA----GCGTTT-TGTT---A..........................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droEre2

CGACAGCGAGATCCGTGTGGCCCAGCAGCCAAGTCCCTCAGAACCGAGAGGTAATCAAGGGATATG------GGTTGTGGAT--------AG-CC-------------AACGAA----AGCAGCGAGTGAATCACGCA-----------------C-GGA-AAAG-GGCAGC-CAACT-T-TG---TTACCAACT-----GATAAGCAGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------TAGCG----AATGTGTC--A--------------------------C-TACAAGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---ATGGTCTC----------------------G----GCCTGCTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................TGTGGAT--------AG-CC-------------AACGAA----AGC....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..ACAGCGAGATCCGTGTGGCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
....AGCGAGATCCGTGTGGCCCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................CAGCGAGTGAATCACGCA-----------------C-GGA-AAAG-.......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
......CGAGATCCGTGTGGCCCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................GCCAAGTCCCTCAGAACCGAGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................AGCCAAGTCCCTCAGAACCGAGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................AGT----------------------GCACCG------------------------------GATTAATTATTATTG..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0

droYak3

CGACAGTGAGATCCGAGTGGCTCAACAGCCAAGTCCCTCAGAACCGAGAGGTAATCAAGGGATATG------GGTTTC-GAA--------AA-CT-------------AACGAA----AACAGCGAGTGAATCACCCA-----------------C-GCA-AAGG-AGCAGC-CGACT---TG---TTACCAACT-----GATAAGAGGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------GAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGA-----C-TACAGGTTGGCT------ATATCTTATCGGCCA----GCGTTT-TGTT---GTGGTCTG----------------------G----GCCTCCTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTT-TGTT---GTGGTCTG----------------------G----GC......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TGATAGTGAAATACGCGTGGCCCAGCAGCCAAGTCCCTCAGAACCAAGAGGTAAATTAGGGATATA------GTTTTA-GAA--------AAGCA-------------AATCAA----AACACTATGTGAATCACCCA-----------------T-GGA-CATT-GGTAAC-TGACT---TG---TTACCAACT-----GATAAGCATT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------TAGCGAGAGTGTGTGTC--ACAGTTCGACACAAATATGCGA-----C-TACAAGTTGGCT------ATATCTTATCGGCTA----GCGTTT-TGTT---GTGGTCT-----------------------G----GTCTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGATAGTGAGATTCGCGTGGCCCAGCAGCCCAGTCCCTCAGAACCCAGAGGTAAATGGGCGATATA------GTTG-T-GAA--------AACCA-------------AATAAA----AACTTTGTGTGATTCACCCT-----------------T-GGA-CAAT-GGTAAC-TGCCT---TG---TTACCAACT-----GATAAGCGGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------TAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGA-----C-TACAAGTTGGCT------ATATCTTATCTG-------GCGTTT-TGTT---GTGGTCTC----------------------G----GTCTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGATAGTGAGATTCGCGTGGCCCAGCAGCCAAGTCCCTCAGAACCAAGAGGTAAATTAGAGAAATA------GTTT-C-GAA--------TAGAA-------------AATAAA----AACACTGTGTGAATCACCCT-----------------C-GGA-CAAT-GGTAAC-TGCCC---TG---TTACCAACT-----GATAAGCGGT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CATCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGA-----C-TACAAGTTGGCT------ATATCTTATC---TA----GCGTTT-TGTT---GTGGTCTC----------------------G----GCCTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGATAGTGAGATTCGTGTGGCCCAGCAGCCAAGCCCCTCAGAGCCCAGAGGTAAATTTGGATTA--TATATAGTTT-C-GAA--------TT-AA-------------AATGAA----AACACTGAGTGAATCACCTG-----------------C-GGA-CAAT-GGTAAC-TGCCT---TG---TTACCAACT-----GATAAGCGCT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGG-----C-AACAAGTCGGCT------ATATCTTATCGGCTA----GCGTTT-TGTT---GTGGTCTC----------------------GATCTCCTTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGATAGTGAGATCCGCGTGGCCCAGCAGCCAAATCCCTCAGAACCGAGAGGTAAATTGGGGAAATA------GTTT-C-GAAATAAGTTT-ACAA-------------AATAAG----AACACTTAATGAATCACCCA-----------------T-GGA-CAGT-GGTAAC-TGCCT---TG---TTACCAACT-----GATAAGAACT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGG-----C-AACAAGTTGGCTATATCTATATCTTATCGGCTG----GCGTTT-TGTT---GTGGTCTC----------------------G----GTCTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGATAGTGAGATTCGCGTGGCCCAGCAGCCAAGCCCCACAGAACCTAGAGGTAAATTGGGGATATT------GTTTTG--AA-------ATA-GA-------------AATGAA----AACACAGCGTGATTCATTCT-----------------C-AAA-CAAC-GGTAAA-TGTC----TG---TTACCAACT-----GATAAGCGCT----------------------GCACCG------------------------------GATTATTTGTTATTGC-----------------------------------TAGCG----AGTGTGTC--ACAGTTCGACGCAAATATGCGG-----C-TACAAGTTGGCT------ATATCTTATCGGCTA----TCGTTT-TGTT---GTGGTCTC----------------------G----GTCCCCTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGATAGTGAGATTCGGGTGGCCCAGCAGCCGAATCCCACAGAACCAAGAGGTAAATAAATC-----TATTTAGATTCT-GGA--------AA-AG-------------AAAGAA----AATA-CAAGTGATTCACCTG-----------------C-GGA-CAAT-GGCAAC-TAACC-TGTG---TTACCCACT-----GATAACGATT----------------------GCACCG------------------------------GATTAATTATTATTGG-----------------------------------CAGAG--AGAGTGTGTC--ACAGTTCGACGCCAATGTGTGG-----CCCACAAGTTGGCT------ATATCTTATCGGCTGGTTGGTATTC-TGTT---GTGGTCCC---------------------GG----GACACTTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGATAGCGAAATTCGCGTGGCCCAGCAGCCGAGTTCCTCGGAGCCAAGAGGTAAAAATAT-----------------G--AA-------TAA-AA-------------AATGAA----AACATAGTGTGATTCACCCG-----------------C-GGA-CATG-GGTAAA-AAACT---TG---TTACCAACT-----GATAAGCAAT----------------------GCACTG------------------------------GATTAATTTATATTGG-----------------------------------CTGGG----AGTGTGTC--ATAGTTCGACATATATACAC-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................ATAGTGTGATTCACCCG-----------------C-GGA-CATG-GGTA...................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0

droBip1

CGATAGCGAAATTCGCGTGGCCCAGCAGCCAAGTCCCACAGAGCCAAGAGGTAACAATATTA-----------TTT-------------AAA-AT-------------AATGAA----AACATTGTGTGATTCACCCG-----------------C-GGA-CATT-GGTAAC-AAACC---TG---TTACCAACT-----GATAAGCAAT----------------------GCACTG------------------------------GATTAATTTATATTGG-----------------------------------CTGGG----AGTGTGTC--ATAGTTCGACATAAATACACAG-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGACAGCGAAATACGCGTGGCACAGCAGCCAAATGCCACAGAACCCAGAGGTAGGTAGATGATGA-AATGTAA--------C------------C-AAG--------AAATATCAACAA---ATACATGAATCACC-A-----------------T-GGA-CATT-GGTACA-ATTTT---TA---CTAAC---CGAACTGATAAGTGGTTTTGCGCCTGTGTTCGCCAG--------------------------CCGCTGCATTTGGATTAATTGTTACGGCGTTCACATGGTCTGTGTGTGGGTGTTGTGTTGTGGTA----------GTGTT--ACTGTTCAAAG-AAATATGCGA-----C-ATAAAATTAGCT------ATATCTTATCAGCAA----AAGTTT-TGTT---GTGGTATCATTATGGCCAATGGCGTCCC-G-GT--TACGCCTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................GGGTGTTGTGTTGTGGTA----------G.................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................TGAATCACC-A-----------------T-GGA-CATT-GGT....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ATACGCGTGGCACAGCAGCCAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAATGGCGTCCC-G-GT--TA......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
CGACAGCGAAATACGCGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........AAATACGCGTGGCACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GTTT-TGTT---GTGGTATCATTAT..............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TGCGCCTGTGTTCGCCAG--------------------------CC...........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AGCGAAATACGCGTGGCACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CTGTTCAAAG-AAATATGCGA-----C-..............................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............ACGCGTGGCACAGCAGCCAAATGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGACAGCGAAATACGCGTGGCACAGCAGCCAAATGCCACGGAACCCAGAGGTAGGTAAATGATGA-AATGTAA--------C------------C-AAG--------AAATATCAACAA---ATACATGAATCACC-A-----------------T-GGA-CATT-GGTACA-A---TTTTTA---CTAAC---TGAACTGATAAGTGGTTTTGCGCCTGTGTTCGCCAG--------------------------CCGCTGCATTTGGATTAATTGTTACGGCGTTCATATGGTCTGTGTGTGCGTGTTGTGTTGTGGTA----------GTGTT--ACTGTTCAAAG-AAATATGCGA-----C-ATAAAATTAGCT------ATATCTTATCAGCAA----AAGTTTTTGTT---GTGGTATCATTATGGCCAATGGCGTCCC-G-GT--TACGCCTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................CATATGGTCTGTGTGTGCG...........................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................A---CTAAC---TGAACTGATAAGTGG............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................GAACTGATAAGTGGTTTTGCGCCTGTGT..............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................AAGTGGTTTTGCGCCTGTG...............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........AAATACGCGTGGCACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTGTGCGTGTTGTGTTGTG...............................................................................................................................................	19	2	1.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................CGTTCATATGGTCTGTGTGT..............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

TGATAGCGAAATCCGTGTGGCTCAACAATCCTCAAATACAGAGCCTAGAGGTAAATTTTT-----------------C-TA--------TAA-ATATTG--CAAATTAG-----------------GTTTAATATTTTGGTCAAATGTTAGTCGAATGAA-TCA---TT-AA-A-------TA---CTTCTAACT-----TATCAGTTG--------------------GCTGCAA----------------------------TTCGGATTAGTTGCTATTGG--------------AGTGTGGGTA-----------CTGTG----TGTGTGTC--ATAGT-GGTAACAAATATT-----------CCCAATTGGCT------ATATCTTATCAGTCAAT--TTGTTT-TGTT---GTGCTTTGTTTATGGTCGTTGT-------------TGTAGTCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................CAACAATCCTCAAATACAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
......................CAACAATCCTCAAATACAGAGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................TTGCTATTGG--------------AGTGTGGGT..........................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................A-----------CTGTG----TGTGTGTC--ATAGT-GGT..................................................................................................................	22	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................CT-----TATCAGTTG--------------------GCTGCAA----------------------------TTC..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............................TCAAATACAGAGCCTAGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......................AACAATCCTCAAATACAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..ATAGCGAAATCCGTGTGGCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.GATAGCGAAATCCGTGTGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TAACAAATATT-----------CCCAATTGGC...................................................................................	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGTT---GTGCTTTGTTTATGGTC..........................	21	1	1.00	1	0	0	0	1	0
................................................................................A--------TAA-ATATTG--CAAATTAG-----------------GTT............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................TGCTATTGG--------------AGTGTGGGTA-----------CT............................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AATTGGCT------ATATCTTATCAGT...............................................................	21	1	1.00	1	0	1	0	0	0
.......GAAATCCGTGTGGCTCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TTTGGTCAAATGTTAGTCGAA.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................CTCAACAATCCTCAAATACAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...TAGCGAAATCCGTGTGGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0

droVir3

TGACAGTGAAATACGCGTGGCTCAAACTACCAATGAAGCCGAACCTCGAGGTAAACTCTAGCCCAA-----TATATTG-AAA--------TT-CC-------------GACAAA----AAACTCACATGAATCATG----------------------AC-AAACGGTTAAT-GTTTT---TT---TTAGTAACT-----GATAATTATT----------------------CCAGTGGTATAGGTGTTGCTGTAAACGACACAACTGGATTAATTGCCAGAGGGT--------------G------------GTGTGGCGAGG----TGTGTGTC--ATACGTCCATA---------------------------TCC------ATATCTTATCAGCAG----CTGTTC-TGCTGTTTTGGTTT---TATGGCCGTCGT-TTGTC-G-ATTCGCCCTATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................TT----------------------CCAGTGGTATAGGTGTTGC..................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TTGCCAGAGGGT--------------G------------GTGTGGCG............................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATTGCCAGAGGGT--------------G------------GTGTGGC.............................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GATTAATTGCCAGAGGGT--------------G------------G...................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGACAGTGAAATACGCGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TATAGGTGTTGCTGTAAACGA.........................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................TATCTTATCAGCAG----CTGTTC-T.................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTTGGTTT---TATGGCCG.........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGTGAAATACGCGTGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TAGCCCAA-----TATATTG-AAA--------TT-C...............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AATACGCGTGGCTCAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TATGGCCGTCGT-TTGTC-G-A...........	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TAATTGCCAGAGGGT--------------G------------GTGTGT..............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GTAACT-----GATAATTATT----------------------CCAGT................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTACCAATGAAGCCGAACCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................CACATGAATCATG----------------------AC-AAACGG......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ATTATT----------------------CCAGTGGTATAGGTG......................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................C-TGCTGTTTTGGTTT---TATGG............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TGTGGCGAGG----TGTGTGTC--ATA........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................AATTGCCAGAGGGT--------------G------------GTGTGGC.............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TATGGCCGTCGT-TTGTC-G-A...........	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GTGTGGCGAGG----TGTGTGTC--...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................A---------------------------TCC------ATATCTTATCAGCAG----CT.......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TATAGGTGTTGCTGTAAACG..........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GATTAATTGCCAGAGGGT--------------G------------GT..................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ACATGAATCATG----------------------AC-AAACGGT.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CGAGG----TGTGTGTC--ATACGTCC...................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATAGGTGTTGCTGTAAACGAC........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CATGAATCATG----------------------AC-AAACGGTT....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTGGTTT---TATGGCCG.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTGGTTT---TATGGCCGT........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................C------ATATCTTATCAGCAG----CTGT.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................ACACAACTGGATTAATTGCCA.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TAATTGCCAGAGGGT--------------G------------GTGTG...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TACCAATGAAGCCGAACCTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTGTC--ATACGTCCATA---------------------------TCC------AT..........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................T--------------G------------GTGTGGCGAGG----TGTGT................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGT-TTGTC-G-ATTCGCCCTA..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATTGCCAGAGGGT--------------G------------GTGTG...............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AATGAAGCCGAACCTCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCGTGGCTCAAACTACCAATGAAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACAGTGAAATACGCGTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCGT-TTGTC-G-ATTCGCCC....	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATG----------------------AC-AAACGGTTAAT-GTTTT---........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CTGTAAACGACACAACTGGAT..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TATT----------------------CCAGTGGTATAGGTGTTGC..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GGATTAATTGCCAGAGGGT--------------G------------GT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................TTAATTGCCAGAGGGT--------------G------------GTGTG...............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................ACGACACAACTGGATTAATTG........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGACAGTGAAATACGCGTGGCTCAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GGATTAATTGCCAGAGGGT--------------G------------G...................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CCAGTGGTATAGGTGTTGC..................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTC-TGCTGTTTTGGTTT---TATG.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACGTCCATA---------------------------TCC------ATATCTTAT...................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AGTGGTATAGGTGTTGCTGTA..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................TA---------------------------TCC------ATATCTTATCAGCAG----C........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................G----CTGTTC-TGCTGTTTTGGTTT---.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGCCAGAGGGT--------------G------------GTGTGGCGA...........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTTTGGTTT---TATGGCC..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GGT--------------G------------GTGTGGCGAGG----TGTGTGT..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................TGCCAGAGGGT--------------G------------GTGTGGCGAGG----TGTG.................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................C-TGCTGTTTTGGTTT---TATGGCC..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGCCAGAGGGT--------------G------------GTGTGTTT............................................................................................................................................	20	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGATAGCGAAATACGTGTGGCTCAAACAAGCACGGCTAACGAACCAAGAGGTAATGTTTTGG-----------TTT-A-G-----------C-AC--AGTTAAAATCAAATAT---------CCAATTGGAATGCT-A-----------------A-TGATTCAT-GTT-TAATATT----TCTTATTAGTAACT-----GATAATTTCT-----------GCTAGTTGT--------------------------ATGTAACAATTGGATTATTAGGTCTGCTGTCTGCCTG---------------TATTTGTGTTTTAGTG----TGTGTGTC--A-----------------GCAG-----G-TACAAGCTGGCC------GTATCTTATCAGCAA----CTGTTTCTGTT---TTGGTTT------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................TTCT-----------GCTAGTTGT--------------------------ATGTAACAATTGGA...............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................CACGGCTAACGAACCAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......GAAATACGTGTGGCTCAAACAAGCACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

TGACAGTGAAATACGAGTGGCCCAAACACCCAGTCCCACCGAACCCCGAGGTAAATAAACTT--------------TA-CG--------AAA-ACAATG--AAATTCAAAC------TATTTTTGGATGAATCACTTG-----------------T-GAA-GC------ACT-TAATG-T-TT---TTAGTGCCT-----GATAAATGTT----------------------TCAATG------------------------------GTGTAGGTGTAA---A-----------------------------------CGATG----AATAT-----------------ATACAAACAGCACAGG-TACACATTGTCCCTATCAGTATCTTATCAGTAC----CCATAC-GATG---GTGCTTT---TATGACCGTTTC---ACCAGC----GCCATTTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_27090

2r:7823803-7823952 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads