ID:

dsi_27082

 Coordinate:

2r:5748252-5748401 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5747949_5748251_-]; CDS [2r_5747949_5748251_-]; intron [2r_5748252_5753713_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCGTATACGCAACATTGGCCGTCGGGAGTAGGTGGGTGGTGTGTGGAGGGCACTGGAAGGCGGGTCCTGTTGGTTTTGCTTTTGATGTAAAGAGGCACTCGAGGCAATTTTACGCTCTTATCCCAATCAACGAGCAGTAATGGCGAGCAGCACAAGGGCGACCGATAGCTAACCTTTGTTGTACGTTACACCGTCCTAGAACAACCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCA
**************************************************...((((..(((((..((....))..(((((((.(((((......))).)))))))))..((((((((..............)))).))))(((((.((((((.((((((........))...)))))))))).)))))..)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M024
male body
...............................................................................................................................................................CGACCGATAGTTAACC........................................................................... 16 1 2 1.00 2 2 0 0 0 0 0 0 0
................................GTGGGTGGTGTGTGGAGG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................GACCGATAGCGAACC........................................................................... 15 1 3 1.00 3 0 2 0 0 1 0 0 0
..............................................................................................................................................................GCGACCGATAGTGAACC........................................................................... 17 2 6 0.67 4 3 1 0 0 0 0 0 0
...............................................................................................................................................................CGACCGATAGCGAACC........................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................CGAGACCGATAGCTAAC............................................................................ 17 2 3 0.33 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................CGACCGATAGTGAACC........................................................................... 16 2 20 0.30 6 1 4 0 1 0 0 0 0
...............................................................................................................................................................CGACCGATAGCGAAC............................................................................ 15 1 8 0.25 2 2 0 0 0 0 0 0 0
......................TAGGCAGTAGGTGGCTGGTGT............................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................CGACCGATAGTTAACCA.......................................................................... 17 2 6 0.17 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................GCGACCGATAGCGAA............................................................................. 15 1 8 0.13 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................TGCGACCGATAGCTAACTA.......................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CATCATCATCAGGGCCAGGCG.............. 21 3 10 0.10 1 0 0 0 0 0 1 0 0
..............ATTTGCCGTTGGGGGTAGG......................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0
....................CGTCGAGAGTAGTTGGGGG................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 1
........................................................................................................................................AGTAATCGCGATCAGCA................................................................................................. 17 2 17 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................CGACCGATAGTTAACT........................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................ACCGATAGCTATCCTG......................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
............ACGTTGGCCTTCGGGA.............................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................................................AAGGGGTACTCGAGGCTA.............................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

ACGCATATGCGTTGTAACCGGCAGCCCTCATCCACCCACCACACACCTCCCGTGACCTTCCGCCCAGGACAACCAAAACGAAAACTACATTTCTCCGTGAGCTCCGTTAAAATGCGAGAATAGGGTTAGTTGCTCGTCATTACCGCTCGTCGTGTTCCCGCTGGCTATCGATTGGAAACAACATGCAATGTGGCAGGATCTTGTTGGTAGTCTGTGTAGTCGTTGTCCCGGTCGGCGTTGTCGGTGTAGT
**************************************************...((((..(((((..((....))..(((((((.(((((......))).)))))))))..((((((((..............)))).))))(((((.((((((.((((((........))...)))))))))).)))))..)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.................................................................................................................GCGAGAGTAGGGTTAG......................................................................................................................... 16 1 3 0.33 1 1 0 0
................................................................................................................................................................................................TCAGGATCTTGTTGGT.......................................... 16 1 4 0.25 1 0 1 0
.................................................................................................TGATCTCCGTTAAGATG........................................................................................................................................ 17 2 12 0.08 1 0 0 1
...................................................................................................................GAGAATAGCCTTAGTTG...................................................................................................................... 17 2 13 0.08 1 0 0 1
..................................................................................................................................TGCTCGTCTTTACAGCT....................................................................................................... 17 2 19 0.05 1 1 0 0
...........................................................................................................................................TCACCGCTCGTCGTGTT.............................................................................................. 17 1 20 0.05 1 1 0 0
.................................................................................AAACTCGATTTCTCCG......................................................................................................................................................... 16 2 20 0.05 1 1 0 0

Generated: 04/23/2015 at 09:38 PM