ID:

dsi_2708

Coordinate:

3l:7477603-7477752 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGAAGCTGCAACAGCAGCAGCAGCAGCAGAACAATAACAGTGATCACCCGGTGAGTTTAAAGTTTATACCGCCTGACCTTTCAGATTGCACAAAAGGATCACAGAGAAAAATGATATAAGTACCTTTAACAGCATACAAAATAAAAATGTAGCCCACAACTGTTCAATAACTTTGTGAAACAATGAACTTTGTCTTTAAAGTCATTGTTCAAAGTGGTTCTACGCCTAATGTATCTTAATATAATAGATT ************************************************..(((..((((((((((...((((((....))))...)).........((((((((.....(((....(((..........((.((((.........)))))).....)))..)))....))))))))....)))))))))).)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
............TGCAACAACAGCAGCAGAACAATAAC....................................................................................................................................................................................................................	26	3	1	2.00	2	0	2	0	0	0	0	0
.........................................GAACACCCGCTGAGTTTA...............................................................................................................................................................................................	18	2	3	2.00	6	6	0	0	0	0	0	0
........................................................................................................................TACTTTTAACATCATACAAAATAA..........................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0	0
............................................CACCCGCTGAGTTTA...............................................................................................................................................................................................	15	1	7	0.86	6	4	0	2	0	0	0	0
..........................................AACACCCGCTGAGTTTAA..............................................................................................................................................................................................	18	2	3	0.67	2	1	0	1	0	0	0	0
................ACAACAGCAGCAGAACAATAACA...................................................................................................................................................................................................................	23	2	2	0.50	1	0	1	0	0	0	0	0
.......................................GAGAACACCCGCTGAGTTTA...............................................................................................................................................................................................	20	3	2	0.50	1	1	0	0	0	0	0	0
..........................................................................................................AAAGATGATAGTAGTACCTTT...........................................................................................................................	21	3	5	0.40	2	0	0	0	2	0	0	0
.........................................GATTACCCGCTGAGTTTAA..............................................................................................................................................................................................	19	2	3	0.33	1	0	0	0	0	1	0	0
........................................AGAACACCCGCTGAGTTTA...............................................................................................................................................................................................	19	3	10	0.20	2	0	0	2	0	0	0	0
.............................................................................................AAGGATCGCAGAGAA..............................................................................................................................................	15	1	8	0.13	1	1	0	0	0	0	0	0
...........................................TCACGCGTTGAGTATAAAG............................................................................................................................................................................................	19	3	10	0.10	1	0	0	0	0	0	1	0
........CAACAGCAGCAGCAGCAGCAGA............................................................................................................................................................................................................................	22	0	12	0.08	1	0	0	0	0	0	0	1

Anti-sense strand reads

TCTTCGACGTTGTCGTCGTCGTCGTCGTCTTGTTATTGTCACTAGTGGGCCACTCAAATTTCAAATATGGCGGACTGGAAAGTCTAACGTGTTTTCCTAGTGTCTCTTTTTACTATATTCATGGAAATTGTCGTATGTTTTATTTTTACATCGGGTGTTGACAAGTTATTGAAACACTTTGTTACTTGAAACAGAAATTTCAGTAACAAGTTTCACCAAGATGCGGATTACATAGAATTATATTATCTAA ************************************************..(((..((((((((((...((((((....))))...)).........((((((((.....(((....(((..........((.((((.........)))))).....)))..)))....))))))))....)))))))))).)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.........TTGTCGTCGTCGGGGTCGTCTTGT.........................................................................................................................................................................................................................	24	2	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................CCAAGATGCGTATTACTTAG...............	20	2	1	1.00	1	1	0	0	0
..................................AGTGTCACTAGCGGGCCTCT....................................................................................................................................................................................................	20	3	2	0.50	1	0	0	1	0
......................................................CAAATTTCAGATGTGGCGGT................................................................................................................................................................................	20	3	2	0.50	1	1	0	0	0
.......................................................................................................................................................................................................................CCAAGATGCGTATTACTTAGAG.............	22	3	2	0.50	1	1	0	0	0
.................................................................................................TAGTGTCCCGTTTTACTAGATT...................................................................................................................................	22	3	2	0.50	1	0	0	0	1
....................................................CTCAAATTTCAGAGAAGGC...................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0
.............................TCGGTATTGTCACTAG.............................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0

Generated: 04/24/2015 at 10:16 AM