ID:

dsi_27071

 Coordinate:

3r:4485842-4485991 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.7 -10.9 -10.9

Flybase annnotation

five_prime_UTR [3r_4485546_4485841_-]; exon [3r_4483690_4485841_-]; intron [3r_4485842_4499126_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGGGCTCTTCTGTTCTAGCGACTATTTGCGGGCTTTCGCAACCTTCGCAGTGGCATTGCGCTCCGCTCGGCGACACACTCGTGATGCAATGCACCCGAAATAAATGCCCAAGAATAGGAATAGGAACCGCACTGTTAGTGGCCGCCAGTCAACTACCAACTAACTAATAAGTCACTTCCCTTCCGTCTTTATCCCCCAGGTGCAGCGGCCCAACTGCGTCAGAGTGTTGAACGTGCCATTGCGAGAATG
*******************************************************************************************************************..((((..((((....(((((((((((..............)).)))))).....)))...)))).))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
 M023
head
 M025
embryo
 M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
......................................................................................................................................................................................................AGGTGCAGCGGCCCAACTG................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCAGAGTGTTGAACGTGCCATTGCGAGAA.. 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................CAACTGCGTCAGAGTGTTGAACGTGCC............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GTGCCATTGCGAGAAT. 16 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................TAGGAATAGGAACCGCACT.................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............GTTCTAGCGACTATTTGCGG.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................TGAACGTGCCATTGCGAGA... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GGCCCAACTGCGTCAGAGT........................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................CCAACTGCGTCAGAGTGTTGAACGTGCC............ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGAGTGTTGAACGTGCCG........... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCCCAACTGCGTCAGAGTGT...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACTGCGTCAGAGTGTTGAACGT............... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTGAACGTGCCATTGCGA..... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GTGTTGAACGTGCCATTGCGA..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CACTTCCCTTCCGTCTTTATCCCCCAG.................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AACGTGCCATTGCGAGA... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................CAACTGCGTCAGAGTGTTGAAC................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACTGCGTCAGAGTGTTGAACG................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACTGCGTCAGAGTGTT..................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGCCCAACTGCGTCAGGGTGT...................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTGAACGTCCCCTTGCGAGC... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................ACACACGTGCTGCAATGGAC........................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..........................TTCCGGGCTTTCGCACC............................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGCCCGAGAAGACAAGATCGCTGATAAACGCCCGAAAGCGTTGGAAGCGTCACCGTAACGCGAGGCGAGCCGCTGTGTGAGCACTACGTTACGTGGGCTTTATTTACGGGTTCTTATCCTTATCCTTGGCGTGACAATCACCGGCGGTCAGTTGATGGTTGATTGATTATTCAGTGAAGGGAAGGCAGAAATAGGGGGTCCACGTCGCCGGGTTGACGCAGTCTCACAACTTGCACGGTAACGCTCTTAC
**************************************************..((((..((((....(((((((((((..............)).)))))).....)))...)))).))))...............******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...........................................................................................................................................................TGGTTGATTGATTATGCGG............................................................................ 19 2 2 4.50 9 2 0 7 0 0 0 0 0
..........................................................................................................................................................GTGGTTGATTGATTATGCGG............................................................................ 20 3 7 2.29 16 15 0 0 1 0 0 0 0
..........................................................................................................................................................ATGGTTGATCGATTAT................................................................................ 16 1 5 1.60 8 0 8 0 0 0 0 0 0
..........................................................................................................................................................GTGGTTGATTGATTATGC.............................................................................. 18 2 4 1.25 5 5 0 0 0 0 0 0 0
................................................................................................................................................CGGTCAGTTGATGGTTGATTGA.................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................GGTTGATTGATTATGC.............................................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................ATGGTTGATTGATTA................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................GGTGGTTGATTGATTATG............................................................................... 18 2 9 0.89 8 7 0 0 1 0 0 0 0
.........................................................................................................................................................GGTGGTTGATTGATTATGC.............................................................................. 19 2 3 0.67 2 1 0 0 1 0 0 0 0
...........................................................................................................................................................TGGTTGATTGATTATGCG............................................................................. 18 2 8 0.50 4 1 0 3 0 0 0 0 0
..........................................................................................................................................................ATGGTTGATTGATTATA............................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................ATGGTTGATCGATTA................................................................................. 15 1 17 0.41 7 0 6 0 0 0 0 1 0
........................................................................................................................TATCCTTGGCTTGACA.................................................................................................................. 16 1 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................AATGGTTGATTGATTAT................................................................................ 17 1 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................................................................................CCGGCGGTCCGTTGGTCGTTG......................................................................................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0
.........................................................................................................................ATCCTTGGCTTGACA.................................................................................................................. 15 1 6 0.17 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................CTCAGTGAAGGGAAGGGACA............................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................TGGTTGATTGATTATGCGGC........................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0
...............................................................................................................................................GGGGTCAGTTGATGGGT.......................................................................................... 17 2 16 0.13 2 0 1 0 0 1 0 0 0
........................................TTGGAATCGTCACCG................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 1 0 0
...........................................................................................................GGGTTCTAATCCTTA................................................................................................................................ 15 1 9 0.11 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................TGGTTGATCGATTAGTC.............................................................................. 17 2 19 0.11 2 0 1 0 0 0 0 0 1
...........................................................................................................................................................TGGTTGATCGATTAT................................................................................ 15 1 20 0.10 2 0 1 0 0 0 0 1 0
...........................................................................................................................................................TGGTTGATCGATTAGTCTG............................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 2
..........................................................................................................................................................ATGGTTGATTGATTATAG.............................................................................. 18 2 12 0.08 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACGCAGTCTCGCAAAT................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................................ATGGATGGTTGATTGATT.................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 1 0
............................................................................................................................................................GGTTGATTGATTATA............................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 08:47 AM