ID:

dsi_27051

 Coordinate:

3l:7236597-7236746 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.5 -32.5 -32.4

Flybase annnotation

CDS [3l_7236747_7237356_-]; exon [3l_7236747_7237642_-]; intron [3l_7235155_7236746_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGGCGGACGCTATGTTCCGCCGGAATACTTCAAGACCGCCATGAGCTTAGGTGAGTGGTCCACAACCTGTCCCCCTCTTCAATTACGAAGGTCAATTGTCCATTGATTGCTTCGGCGGGCTTATCGGTCGTGTGCCAATTCTCGAGAGCTTTTCGCTTTTCTCTATATAGCGCAGTTCAGGCATAAACTTTCCTTGCGATAGCCGAGAAGTAAGAGGTTTCCCCATGGGTATGACTAGTATATACATACA
**************************************************.((((((((.(((.(((.((.(((...........(((((((((((.....))))))..)))))..)))...)).))).))).))))...)))).(((((...((((...........)))).)))))..(((...........)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................................................................................AGAGGTTTCCCCATGGGTATG................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTCCTTGCGATAGCCGAGAAGTAAGA................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................TCCATTGATTGCTTCGGCGG.................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................GTTGATCGCTTCGGCGGG................................................................................................................................... 18 2 3 1.00 3 3 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAAGTAAAAGGTTTCACCA......................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0
.....................................................................................................GTTGATCGCTTCGGCGGGTT................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................AGCAGAGAAGTTAGAGGTTC.............................. 20 3 9 0.11 1 0 1 0 0 0 0 0 0
..............................................................TAAGCTGTCCCCCTCTT........................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1 0 0
........GCTATGTTCGGTCGGGATA............................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................GAGACATAAGAGGTTTCCT........................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0
...............................AAGACCCCCCTGAGCT........................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCCGCCTGCGATACAAGGCGGCCTTATGAAGTTCTGGCGGTACTCGAATCCACTCACCAGGTGTTGGACAGGGGGAGAAGTTAATGCTTCCAGTTAACAGGTAACTAACGAAGCCGCCCGAATAGCCAGCACACGGTTAAGAGCTCTCGAAAAGCGAAAAGAGATATATCGCGTCAAGTCCGTATTTGAAAGGAACGCTATCGGCTCTTCATTCTCCAAAGGGGTACCCATACTGATCATATATGTATGT
**************************************************.((((((((.(((.(((.((.(((...........(((((((((((.....))))))..)))))..)))...)).))).))).))))...)))).(((((...((((...........)))).)))))..(((...........)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M024
male body		 M053
female body
.......................................................................................................................................................................ATCTCCGCAAGTCCGTATT................................................................ 19 3 8 16.88 135 96 1 11 9 6 2 5 3 1 1
..........................................................AGGTGTTGGACAGGG................................................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................AGTTAACAGGTAACTAACGAA.......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATCGCCGCAAGTCCGTAT................................................................. 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................TCTCCTCAAGTCCGTATTAG.............................................................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GCCGAATAGCCAGCA....................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0
...................GGCCTTGTAAAGTTCTGG..................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0
.........................................................................GGTGAAGTTAATGCTT................................................................................................................................................................. 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................ATCTCCCCAAGTCCGTATT................................................................ 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
..............................................................................AGTTGATGCTTGCAGTTCA......................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................AGGAACGCTATCGAGTCTC......................................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.........................................AGTCGAATCCACTTACC................................................................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................ATCGCGTCAGGTTCGT................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................ACTGTTCATATATGTGTG. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................TCGAGTCAAGTCCGTG.................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 12:30 AM