ID:

dsi_27050

 Coordinate:

3l:8085703-8085852 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.0 -18.6 -18.6

Flybase annnotation

exon [3l_8085310_8085702_-]; CDS [3l_8085310_8085702_-]; intron [3l_8085703_8086755_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAACTTATTGTATTTCGTTTTAATAACTGGCTTCTATTACCGGCATGAAATTCTAATTTAACCTTGGTTCAGTACATACATTGCATAGTTTTCCCATAAAAATAGCAATTAATGTAGTATCAAATATAAGTATGATAACCCGTTTATTTGTACCTATTTTGTGCCTTTTACTAAGTTCAAGTTTAATTTTCACTTGTAGGCCCATGAGTCCGACGAGCTGCGCTTCGATGTTGTAGTGAACAACCTAAA
**************************************************.............((((((....(((((..(((((...(((((......))))).)))))..)))))((((.(((((...((((((............)))))).))))).)))).....))))))..(((((.........)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................................................................................................GTCCGACGATCAGCGCTTCGA..................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GAGCTGCGCTTCGATG................... 16 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................GTAGTATCAAATATAAGTATGATA................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................CAGTCCGACGATCTACGCTTCGA..................... 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AGTCCGACGATCTGCGCG......................... 18 2 4 0.25 1 0 0 0 1 0 0
................................................................................................................................................................................................................GTCCGACGATCTGCGG.......................... 16 2 20 0.10 2 0 0 0 2 0 0
................................................................................................................................................................................................................GTCCGACGATCTGCGA.......................... 16 2 20 0.10 2 0 0 0 2 0 0
...............................................................................................................................................................................................................AGTCCGACGATCTGCGA.......................... 17 2 11 0.09 1 0 0 0 0 1 0
.....TTATGGTATTTGGTTTTAA.................................................................................................................................................................................................................................. 19 2 15 0.07 1 0 0 0 0 0 1
.......................ATAACTGGCTTGTAT.................................................................................................................................................................................................................... 15 1 15 0.07 1 0 1 0 0 0 0
................................................................................................................................................................................................................GTCCGACGATCTGCGTT......................... 17 2 19 0.05 1 0 0 0 1 0 0
...............................................................................................................................................................................................................AGTCCGACGATCTTCGGTT........................ 19 3 20 0.05 1 0 0 0 1 0 0
.................................................................................................................................................................................................................TCCGACGATCTTCTCTTCGA..................... 20 3 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AGTCCGACGATCTGCGG.......................... 17 2 20 0.05 1 0 0 0 0 1 0
........................TAACTGGCTTGTGATACC................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................................................................................................AGTCCGACGATCTTCGGT......................... 18 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GCTTGAATAACATAAAGCAAAATTATTGACCGAAGATAATGGCCGTACTTTAAGATTAAATTGGAACCAAGTCATGTATGTAACGTATCAAAAGGGTATTTTTATCGTTAATTACATCATAGTTTATATTCATACTATTGGGCAAATAAACATGGATAAAACACGGAAAATGATTCAAGTTCAAATTAAAAGTGAACATCCGGGTACTCAGGCTGCTCGACGCGAAGCTACAACATCACTTGTTGGATTT
**************************************************.............((((((....(((((..(((((...(((((......))))).)))))..)))))((((.(((((...((((((............)))))).))))).)))).....))))))..(((((.........)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................................ACAAGGAGCATGATTCAAGTT..................................................................... 21 3 1 5.00 5 2 2 1 0 0 0 0 0 0
.....................................................................................................................................................................GAGCATGATTCAAGTT..................................................................... 16 2 20 0.80 16 0 0 0 15 0 0 0 0 1
................................................................................................................................................................................................TGAACATACAGGTACTCA........................................ 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TACTCGGGCTGCTCGATG............................ 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................CAAGGAGCATGATTCAAGTT..................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GGGTACTCAGGCTTC.................................. 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TGAGTCAAGTTCAATTTAAA............................................................ 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................ATACTCGGGCTGCTCGATG............................ 19 3 10 0.20 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................ACAAGGAGCATGATTCAAGT...................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACTCGGGCTGCTCGATG............................ 17 2 12 0.17 2 0 0 0 1 0 1 0 0 0
...........................................................................................................................................................................GAGTCAAGTTCAATTTAAA............................................................ 19 2 12 0.17 2 0 0 0 0 2 0 0 0 0
............................................................................................................................................................................................................TACTCGGGCTGCTCGACGG........................... 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................CAAGGAGCATGATTCAAGT...................................................................... 19 3 12 0.17 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCGAAGCTACAGCAT.............. 15 1 11 0.09 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................ATACTCGGGCTGCTCGA.............................. 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0
.......................................TGGCTGTATTTTAAGATCAA............................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TCACGCTGCTGGACGCG.......................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................ACAAGGAGCATGATTCAAG....................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
..................................................GAAGATTACATTGGAA........................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................GCTGCTCGACGCCAGGC...................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................TCGGGCTGCTCGACG............................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:39 AM