ID:dsi_27034 |
Coordinate:3l:11506231-11506393 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_11506046_11506230_-]; CDS [3l_11506046_11506230_-]; CDS [3l_11506394_11508297_-]; exon [3l_11506394_11508297_-]; intron [3l_11506231_11506393_-]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTTGAGTGGCGTGCGTCTGACTAAAAGTTTTGATCTGACTTACACAAGAGGTAAGGCATTTAAAGCCTAGAGATATGAATTTACTTATTCAAGATAAATGGACTTAAATTTAGCGGCAACACTCACTAATTAAATCTATGAATTAAACTTAGTGGTTAAGTTATACTTTCAAAAAGTGCATTCGAAACAAAGCTAAATGTCATTACTTTCCAGTGTGCACTGGTAACTTCAACACCAATTCCGGGATAATCAGTACTCCCAAC **************************************************................((.((((.(((((((((((.......((...(((.((((......((.(((...((.((((((((((.((...)).))))..))))))))...)))...))......)))).))))).......)).))))).))))...)))).))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553486 Makindu_3 day-old ovaries |
M053 female body |
SRR553485 Chicharo_3 day-old ovaries |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR902008 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................CTGACTAAAAGTTTTGATCTGACT............................................................................................................................................................................................................................... | 24 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| CTTGAGTGGCGTGCGTCTGACTAAAAGT........................................................................................................................................................................................................................................... | 28 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................TTTTGATTTGACTTACACAAGAGT.................................................................................................................................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................ATCTGACTTACACAAGAGT.................................................................................................................................................................................................................... | 19 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................ACGAAAAGTCTTGATCTGA................................................................................................................................................................................................................................. | 19 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................GAGTGTGCACTGGTAACTTC................................. | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................CACCAATTCCGGGATAATCAGTAC....... | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................CTGACTAAAAGTTTTGATCT................................................................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................CTAAAAGTTTTGATCTGACTTACACAAGA...................................................................................................................................................................................................................... | 29 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................CTGACTAAAAGTTTTGATCC................................................................................................................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....AGTGAGGTGCGTCTGACT................................................................................................................................................................................................................................................. | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................AAAGCGGTGATCTGACTTA............................................................................................................................................................................................................................. | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................................................................................TGCATTCGGAACAAA........................................................................ | 15 | 1 | 19 | 0.11 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .........................................................................................................................................ATGTATTAAACTCAGTGGTC.......................................................................................................... | 20 | 3 | 11 | 0.09 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................GAAGAAAAATGGACTGAAATT......................................................................................................................................................... | 21 | 3 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................ACTTATTGCAGATTAATGGA................................................................................................................................................................. | 20 | 3 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................AATGTATTGATCTGACT............................................................................................................................................................................................................................... | 17 | 2 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .........................................................................................................................................ATGAATTAAACTCAGTTGTC.......................................................................................................... | 20 | 3 | 17 | 0.06 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................ACTACAAGATTTGCTCTGA................................................................................................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................AAGAGGTAAGGCGTTG.......................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
|
GAACTCACCGCACGCAGACTGATTTTCAAAACTAGACTGAATGTGTTCTCCATTCCGTAAATTTCGGATCTCTATACTTAAATGAATAAGTTCTATTTACCTGAATTTAAATCGCCGTTGTGAGTGATTAATTTAGATACTTAATTTGAATCACCAATTCAATATGAAAGTTTTTCACGTAAGCTTTGTTTCGATTTACAGTAATGAAAGGTCACACGTGACCATTGAAGTTGTGGTTAAGGCCCTATTAGTCATGAGGGTTG
**************************************************................((.((((.(((((((((((.......((...(((.((((......((.(((...((.((((((((((.((...)).))))..))))))))...)))...))......)))).))))).......)).))))).))))...)))).))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
M053 female body |
SRR618934 dsim w501 ovaries |
M023 head |
SRR553487 NRT_0-2 hours eggs |
SRR902008 ovaries |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................................TTAAGGCCGTATTAGT........... | 16 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................TGATTAAGGCCGTATTAGT........... | 19 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................TAAGGCCGTATTAGT........... | 15 | 1 | 10 | 0.90 | 9 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................AAGTTGTGCTTAAGCCCCT................. | 19 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................TAAGGCCGTATTAGTGA......... | 17 | 2 | 13 | 0.31 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................TGGTTAAGGCCCCACTATTC.......... | 20 | 3 | 7 | 0.29 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................TGTGTAAGGCCCTATTAG............ | 18 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................TGGTTAAGGCCCCACTATT........... | 19 | 3 | 20 | 0.15 | 3 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .........................................................................................................................................................................................................................................TGGTTAAGGCCCCACTA............. | 17 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................TTTCGCCACTAGACTGAAT............................................................................................................................................................................................................................. | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................TTTGGTTAAGGCCCCACTA............. | 19 | 3 | 20 | 0.10 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................GATTAAGGCCGTATTAG............ | 17 | 2 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................TTTTTTTCGAGTTAGAGTAAT.......................................................... | 21 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................CCGATGTGAGTGATTATATT................................................................................................................................. | 20 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................ATTAGTAATGAGGGTAG | 17 | 2 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............GCAGACTGATTGCCAAA......................................................................................................................................................................................................................................... | 17 | 2 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................TTCTAAACTAGACTGTCTGT........................................................................................................................................................................................................................... | 20 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................................................................................AAGTTCTATTTCCCT................................................................................................................................................................. | 15 | 1 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................AAGTTTTTCACGTGA................................................................................. | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................................................................AGTAAGGCCCTATTAGTG.......... | 18 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................TTTGGTTAAGGCCCCA................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:23 AM