ID:

dsi_27021

 Coordinate:

2l:18036829-18037077 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-56.8 -56.6 -56.6

Flybase annnotation

exon [2l_18036346_18037323_-]; CDS [2l_18036346_18037323_-]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy-

Sense Strand Reads

#############################################################################################################################################################################################################################################################################################################################################################
AGCAACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACCTGCCGGGGGCAGCAGCAGCATGCACCACTCCCAGTAGAAATGCACAGGCACAAAATCAGCTGTTGGTGAGTGATGTGTTATCATCGCCACAGCAGCAGCAGCAACATCACTCACGTTTTCACCACGCACAGCAGCCGCCGCAGCAGCAGCAACATCAATCATCATCGCCGGCACGTCGGGCACGGGCACCAACAAATGCCACCACATCTGCAACAACTAACATGCCCAGCACTTCATCCATAACTCAGCACCCACCCACACACAC
*************************************************************************.....(((((.(((((((((((((....)).))).))..............(((....)))........(((((((((((((((((((((......((....))......))).)))))))))))..............))))))).((.((....)).)).................)))))).)))))((....))..**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
................................TCACAAACAGACAACTATGTAGGA..................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TATTGTTGACCTGCCGGGG................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................CCTGCCGGGGGCACCA........................................................................................................................................................................................................................................................... 16 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
................................TCACAAACAGACAACTATGTAGGATTAT................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................ATTGTTGACCTGCCGGGGGCA.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TCGCCGGCACGTCGGGCACGGGCAC............................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................AGCAGCAGCATGCACCACTC........................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................CACAAACAGACAACTATGTAGGATTAT................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................GGGACGTCGGGCCCGGGC.............................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................ACCATGCACAGCAGCGGCC.............................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................TGTGTAACAACTCACATGCC....................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................TGTAACAACTCACCTGCCC...................................... 19 3 18 0.17 3 0 0 0 0 0 0 0 0 0 3 0
..........................................................................................................................................................................................................................................................................................................................ACTGCATCCATAACT.................... 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................ATGCTCCACGCCCAGTA..................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................CGGCGCGCCGGGCCCGGG............................................................................... 18 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................TAATCAGCTGTGGGTTAGT.................................................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................CCGGCGCGCCGGGCCCGG................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................AGCTGTCGGGGAGTGA................................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGTTGGCAACGTCGACGTCGTCGTTGTGAAGAGTGTTTGTCTGTTGATACATCCTAATAGCGAATATGGTTTATAACAACTGGACGGCCCCCGTCGTCGTCGTACGTGGTGAGGGTCATCTTTACGTGTCCGTGTTTTAGTCGACAACCACTCACTACACAATAGTAGCGGTGTCGTCGTCGTCGTTGTAGTGAGTGCAAAAGTGGTGCGTGTCGTCGGCGGCGTCGTCGTCGTTGTAGTTAGTAGTAGCGGCCGTGCAGCCCGTGCCCGTGGTTGTTTACGGTGGTGTAGACGTTGTTGATTGTACGGGTCGTGAAGTAGGTATTGAGTCGTGGGTGGGTGTGTGTG
****************************************************************************.....(((((.(((((((((((((....)).))).))..............(((....)))........(((((((((((((((((((((......((....))......))).)))))))))))..............))))))).((.((....)).)).................)))))).)))))((....))..************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................................................................................................TAATGAGTGCAAATGTGGTG............................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GTGAAGTAGGTATTGAGTCGT............... 21 0 1 1.00 1 1 0 0 0 0 0
......................................TGTCAGTTGATACATACTAAGA................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................AAGTAGGTATAGAGTC................. 16 1 3 0.67 2 0 2 0 0 0 0
..........................................................................................................................................................................................................................................................CGGCCGTGCTGCGCGTGC................................................................................. 18 2 2 0.50 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................AGCCCGTGCCATTGGCTGTTT..................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................TGAGTGCAAATGTGG.............................................................................................................................................. 15 1 4 0.25 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................TCGTAGCGGCCGGGCAG........................................................................................ 17 2 7 0.14 1 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................CTGTTTACGGTGGTGT........................................................... 16 1 11 0.09 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACGTTGTTGATACTACGG....................................... 18 2 11 0.09 1 0 1 0 0 0 0
......................................................................................................GTACGTGGTAAGGGACA...................................................................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AGGTATTGTGTCGTAG............. 16 2 20 0.05 1 0 0 0 0 0 1
........................TTTTGAAGAGTGTTT...................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18036779-18037127 - dsi_27021 AGCA------------------ACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACCTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---AAAATCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCACGCACAGCAG---------------------CCGCCGCAGCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---CACGGGCACCA---------ACAAATGCCACCACATCTGCAACAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---
droSec2 scaffold_7:2101648-2101993 - AGCA------------------ACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---AAAACCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCACGCACAGCAG---------------------CCGCC---GCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---CACGGGCACCA---------ACAAATGCCACCACATCTGCAACAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---
dm3 chr2L:18475781-18476138 - AGCAGCAGC------------AACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------ACAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTG---TT-------------ACCATCGCCACAGCAGCA---GCA--------------------------------------------------------------G---------------------CAGCAACATCACTCAC---GTTTTCACCACGCACAGCAG---------------------CCGCCGCAACAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---CACGGGCACCA---------ACAAATGCCATCACATCTGCAACAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---
droEre2 scaffold_4845:5795199-5795544 + AACA------------------ACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGGCTATCGCTTATACCAAATATTGTTGAGTTGCCA--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCGGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCATGCACAGCAGCAG------------------CAGCAGCAGCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---------CACCA---------ACAAATGCCACCACATCCGCAATACCTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---
droYak3 2R:4992238-4992601 - AGCAAC---------------AACCATTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGACTATCGCTTATACCAAATATTGTTGAGTTGCCA--------GGG------GCG----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGCTGGTGAGTGATGTG---CT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCATGCACAGCAGCAGCAGCA---GCAACAGCAGCCGCCGCAGCAGCAGCAACATCAATCATCATCGCCAGCACGTC---GAG---------CACCA---------ACAAATGCCACCACATCTTCAATACCTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCTCCC---ACACA------CAC---
droEug1 scf7180000409447:417851-418229 - AGCA------------------GCCGTTGCAACTGCAGCAGCAACACTTTTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATTTGCCA--------GCG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAGCACCGTGCACCGCTCCCAGTAGA------------AATACACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCCACAGCAGCA---GCA------GCAACAACAACAACA-----------------------------------------ACAACAACATCAGCAACACCAGCAGCAACATCACTCAC---GTTTTCATCATGCACAACAG---------------------------CAGCAGCAACAACATCAATCATCATCGCCGGCACGTC---GTC---------CACCA---------ACAAATGCCACCACATCTGCAATAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---
droBia1 scf7180000302422:5211655-5212000 + AGCA------------------ACCGCTGCAACTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTAATACCAAATATTGTAGATTTGCCA--------GCG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAGCAACTTGCACCACTCCCTCTAGA------------AATGTACAGGC---AC---ACAGTCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCAACACCAGCA---GCA------GCA-----------------------------------------------------A---------------------CAGCAACATCACTCAC---GTTTTCATCAGGCACAACAG---------------------------CAGCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GTC---------CACCA---------ACAAATCCGACCACATCTGCAATAACTAACATGC-----------------------CCAGCA------CTCCATCCATAACTCAGCACCCACCC---ACACA------CAC---
droTak1 scf7180000415867:751641-751983 - AGCA------------------GCCGCTGCAACTGCAGCAGCAACACTTTTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATCGTAGATTTGCCA--------GCG------GCA------------------------------------------------------------------------------------GCGGC----------------------AGCAGCAA---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCAACACCAGCA---GCA------ACAGCAACAACACCA-----------------------------------------G---------------------CAGCAGCATCACTCAC---GTTTTCA---------------------------------------------GCCGCAACATCAATCATCATCGCCGGCACGTC---GTC---------CACCA---------ACAAATGCCACCGCATCTGCAGTAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---
droEle1 scf7180000491338:2443241-2443580 - AGCAGC---------------AACCATTGCTGCTACAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATTTGCCA--------GCA------GCG------------------------------------------------------------------------------------GCACC----------------------AGCAGCAA---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCCACAGCAGC--------------------------------------------------------------------------------------------AACAACATCACTCAC---GTTTTCATCATGCACAGCCGAAGCAGCA---G---------CAACAGCAGCAGCAACAACATAAATCATCATCGCCGGCACGTC---GTC---------CACCA---------AC------------------AATAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCTGCACCCACCC---ACACA------ATC---
droRho1 scf7180000758905:508-853 + AGCA------------------ACCATTGCAGCTACAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTAATACCAAATATTGTAGATATGCCA--------GCG------TCG----------------------------------------------------------------------------------------------------------------GCAGCAGCAACATGCACCACTCCCACTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCCACAGCAGCA---CC--------------------------------------------------------------------------------------AACAACATCACTCAC---GTTTTCATCATGCACAGCAG---------------------CAGCAGCATCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GAC---------CACCA---------ACAAATGCCACCGCATCCACTATAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------ATC---
droFic1 scf7180000454059:472356-472758 + AGCA------------------ACCATTGCTGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GCA------GCA------ACAGCAAGCC------------------------------------------------------A------------AGCAGC----------------------AGCAACAG---CAAGCACAAATCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCACCGCAGCAGCA---ACA------CCAACAACAACAACA-----------------------------------------A---------------------CAGCAAAATCACTCAC---GTTTTCATCTTGTACAGCAACAACAGCAAAAGCAGCATCAGCATCAGCATCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GAG---------CGGCA---------ACAAATGCCACCGCATCGGCAACAACTAACATGA-----------------------ACAGCA------CCTCATCCATTACTCAGCACCCACCCACAACACA------CAA---
droKik1 scf7180000302470:73020-73415 + AGCA------------------ACAACAACAGCAGCAGCAGCAACAGA--------------------------------------------------AAGTGGCCGCTTCCTTAGCAATG-CATCAGCAGCAGCAACAAACGCTGCCCGCTCTGCAGCCAATTCCAGCCCTGAGCTCCATCTTCGAGCCGTCGACGGAGC------AACAGCAGCAGCAGCAGCAGTTGCAAATGCA-GCAACAA---CAATTG-----------------------------------------------GCCCAGCTGCTGATGT----------------------------------CACATCAGCA---GCAATCGCAACATCAACAGCAACAAATCATCACTGCCACGCAGCCGCCGCCATTGGCTGCTGCGAACAA------------------CAACAACAATAC-------------------------------------------------------------------------AAACACTGCCAACAACTCTACTGC---CAGCA---------------------------ACAGTAACAATAACCAAAATGCCTCGAATAATTTAAGCAACATCAGCAACA------CCACTGCCATACAGCCACAGCCACTG---CCACA------GG----
droAna3 scaffold_12916:2381429-2381777 - AGCA------------------------------GCAACATCCACACTTTTCAGAAACAGACAACTATGTAGGGTTATCGCTCGTACCAAATATTGTAGATATGCCG--------GCCGCCACTTCGGTGAACGCGGCAACCGCCAT---------------------------------------------T----------------------------------------------GCTGCGG---CATGCACCTCTCCCAGTAGA------------ACTGCACAGAA---AC---ACGGCCAGCTGCTGGTGAGTGATAGC---TT-------------ATCATTGCCACAGCAGC--------------------------------------------------------------------------------------------AGCCACATCACTCACATCGCTCTCATCACGCACCTCAG---------------------------------CA---GCAT---CCATCTACGCCGACACGTC---GCCATGCCCCGACAGCA------------ACATCCACAACATCTT---CAGCCAACATAC-----------------------CCAGCA------CCTCATCCATAACTCAGCACCCACCC---ACTCCCCAGACCAC---
droBip1 scf7180000396430:327117-327465 - AACA------------------TCC------------------ACACTTTTCAGAAACAGACAACTATGTAGGGTTATCGCTCGTACCAAATATTGTAGATATGCCA--------GCCACCACTTCGGTGAACGCGGCAACCGCCAT---------------------------------------------T----------------------------------------------GCTGCGG---CATGCACCTCTCCCAGTAGA------------ACTGCACAGAC---AC---ACGGCCAGCTGCTGGTGAGTGATAGC---TT-------------ATCATTGCCGCAGCAGC--------------------------------------------------------------------------------------------AGCCACATCACTCGC---GCTCTCATCACGCACCTCAG---------------------------------CA---GCAT---CCATCCACGCCGACACGTC---GCCATGCCCCGGCAGCAACATCTGCA---ACATCCACAACATCTT---CAGCAAACATAC-----------------------CTAGCA------CCTCATCCATAACTCAGCACCCACCC---ACTCCCCAGACCAC---
dp5 4_group3:3639002-3639341 - AGCAACAGCAGCAGCTGCCACAACCATTGAAGCTGCAACAGCAACATTTCTCACAGACCGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GTG------GCA----------------------------------------------------------------------------------------------------------------GCACCAC---AATGCACCACCCCCAGTAGA------------CATGCACAGGC---ACAGAATCATCAGCTGTTGGTGAGTGATGCCACCAC-------------ATCATTGCCACAGCAGCA---GCA------ACA-----------------------------------------------------G---------------------CAGCAACATCAGTCAC---GTTTTCAGTAT------------------------------------------------------CCATCATCGCCGGCACGTC---GACATGT------------ATATGAG-------C-----CATCATCATCATCCAACATAC-----------------------CCAGCACTACCACTTCATCCATAACTCAGCACTCACCC---ACACA------CCT---
droPer2 scaffold_1:5120264-5120606 - AGCAACAGCAGCAGCTGCCACAACCATTGAAGCTGCAACAGCAACATTTCTCACAGACCGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GTG------GCA----------------------------------------------------------------------------------------------------------------GCACCAC---AATGCACCACCCCCAGTAGA------------CATGCACAGGC---ACAGAATCATCAGCTGTTGGTGAGTGATGCCACCAC-------------ATCATTGCCACAGCAGCA---GCA------ACA-----------------------------------------------------G---------------------CAGCAACATCAGTCAC---GTTTTCAGTAT------------------------------------------------------CCATCATCGCCGGCACGTC---GACATGT------------ATATGAG-------C-----CATCATCATCATCCAACATAC-----------------------CCAGCACTACCACTTCATCCATAACTCAGCACTCACCC---ACACA------CCTCCC
droWil2 scf2_1100000004521:11628431-11628836 - ATCA------------------GCCATTGCAGCTACAGCAGAAACATTTCTCACAAACAGACAATTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GCAACACCAACAGCAGCTGCAGCAGTCGCCGC---------------------------------------------CGCTGTAACAACAACGACAGCAGCGGCTGCAGCGGCAGCAACAACA-GCAACAG---CAACTAGTACACCAAGTAGA------------CACACACAGTCAACAC---ACAGCCAGCTGTTGGTGAGTGATGCT---AC-------------ATCATCTCATCAGCATCA---GCA------ACAACAACAACAACA-----------------------------------------GCAA------------------CAACAACAGCATACAC---GTTTCCATCATGCACATCA------------------------------------GCAACATCAATCATCATC---GTCACGTC---GCTATG---------------------------------TATATGAACCATTCAACATAC-----------------------CAAGCA------CTGCACCAACATCCCAGCACACACCC---ACACA------TTC---
droVir3 scaffold_12963:18456141-18456453 - AGCA------------------ACCGTTGCAGCTGCAGCAGCAACACTTTTCACAAACAGACAACTATGTAGGACTCTCGCTTATACCAAATATTATTGATATGCCA--------GCA------GCA----------------------------------------------------------------------------------------------------------------GCAACAA---CA---------CACAGTAGACTACACCCAACACATGCACCG------C---ACAATCAGCTGTTGGTGAGTGATGC----TGAACACGCGC-----------CAACAACAGCA---GCA------ACAGCAATAACTACG-----------------------------------------GC----------------------ACAGCAACAGTCAC---GCCAGCAACACG---------------------------------------------CACATCAATCA---------GCACGTC---GCCCAG---------CA---------CCAG---------------CTTCATCCACATTGC-----------------------ACAGCACC---ACCTCATC------CCAGCACACGACACCTACACA------CAT---
droMoj3 scaffold_6500:6180174-6180519 + AGCA------------------GCCATTGCTGCTGCAGCAGCAGCACTTTTCACAAACAGACAACTATGTAGGATTGTCGCTTATACCAAATATTGTTGATGTGCCA--------GCA------GCA----------------------------------------------------------------------------------------------------------------GCAGCAG---CTGCTATCACACCCACTAGA---CAA------AAAACACAGCC---ACAACACAATCAGCTGTTGGTGAGTGATGC----TGAGCACACGC-----------CAACAACAATT---GC------A--------------------------------------------------------CC----------------------GCAGCAACAAGCAC---GCCACCATCACGCACATCA---------------------------------GCAACAACATCAATCA---------GCACGTC---GTTTAGCACCAACAACACCAACACCAACATCTACATCTCCATCTGCA---TCTACTTTGC-----------------------ACAGCA------CTACAT------CTCAGCACACACCC---ACACAGAACAGCAT---
droGri2 scaffold_3244:1930-2275 - AGCA---------------------------GCAACAGCAACAACACTTTTCACAAACAGACAACTATGTAGGACTATCGCTCATACCAAATATTGTTGATAAGCCA--------GCAACAGCAGCAGTA---GCAGCAACAGCA----------------------------------------------------------------------------------------------GCAGCAG---CAACTAGCACACCCAGTAGTAGACAC------AATGCACAGAACACAC---ACAATCAGCTGTTGGTGAGTGATGCT----GAGCATACGCCATCATCATCGCCACAGCAGCATCAGCA------ACAACAACAACATCA-----------------------------------------A---------------------CAACAATTACAGTCAC---GTTTCCATCATGCACAACA---------------------------------GCAACCACATCAATCA---------GCACGTC---GCATTGC------AC---------------------------------CACTAAACAT--------------------------CAGCA------CCACAT------CACAGCACACAACT---AATCA------TGC---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCA------------------ACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACCTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---AAAATCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCACGCACAGCAG---------------------CCGCCGCAGCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---CACGGGCACCA---------ACAAATGCCACCACATCTGCAACAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................TCACAAACAGACAACTATGTAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
...........................................................................................TATTGTTGACCTGCCG--------GGG------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..................................................TCACAAACAGACAACTATGTAGGATTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................ATTGTTGACCTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCGGCACGTC---GGG---CACGGGCAC..............................................................................................................................2511.00100010000000000000
..............................................................................................................................A----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
...................................................CACAAACAGACAACTATGTAGGATTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
AGCA------------------ACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---AAAACCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCACGCACAGCAG---------------------CCGCC---GCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---CACGGGCACCA---------ACAAATGCCACCACATCTGCAACAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................TGCAGCTGCAGCAGCAACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGCCGGCACGTC---G............................................................................................................................................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................CCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAA.................................................................................................................................................................................................................................................18130.0810001
dm3
AGCAGCAGC------------AACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------ACAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTG---TT-------------ACCATCGCCACAGCAGCA---GCA--------------------------------------------------------------G---------------------CAGCAACATCACTCAC---GTTTTCACCACGCACAGCAG---------------------CCGCCGCAACAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---CACGGGCACCA---------ACAAATGCCATCACATCTGCAACAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................TATGTAGGATTATCGCTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCACGTC---GGG---CACGGGCA...............................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGCCGGCACGTC---GGG---T......................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAACAACTAACATGC-----------------------CCAGCA------C.............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CTGTTGGTGAGTGATGTG---TT-------------...................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................CCCAGTAGA------------AATGCACAGGC---AC---ACAA...........................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATCCATAACTCAGCACCC........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACCACGCACAGCAG---------------------CCG........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATCAGCTGTTGGTGAGTGATG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AACTATGTAGGATTATCGCTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TATACCAAATATTGTTGACTTGCCG--------GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................CAGCTGTTGGTGAGTGATGTG---..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCACATCTGCAACAACTA.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AATCAGCTGTTGGTGAGTGATGTG---TT-------------...................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................AGCTGTTGGTGAGTGATG.......................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------CCAGCA------CTTCATCCATAACTCAGG............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACATGC-----------------------CCAGCA------CTTCATCCATAAC.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCATAACTCAGCACCCACCC---ACACA------......2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGCCGGCACGTC---GGG---CAC....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGCCGGCACGTC---GGG---.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACATCTGCAACAACTAAC.....................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------CCAGCA------CTTCATCCATAACTCAGC............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCACAAACAGACAACTATGTAGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................TCCCAGTAGA------------AATGCACAGGC---AC---ACAA...........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GC---AC---ACAATCAGCTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................ATTGTTGACTTGCCG--------GGG------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------CCAGCA------CTTCATCCATAACTCAG.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AACAGACAACTATGTAGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AACTATGTAGGATTATCGCTTATACCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGCCGGCACGTC---GGG---T......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................TATTGTTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------ACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................TTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------ACAGCAG---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCGGCACGTC---GGG---CACGGGCACCA---------AC.................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCACGTC---GGG---CACGGGCAC..............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATCGCCGGCACGTC---GGG---CACGGG.................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................ATTGTTGACTTGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........C------------AACCGTTGCAGCTGCAGCAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------ACAGCAG---CATGCACCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................AGCTGTTGGTGAGTGATGTG---TT-------------A..................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACGCACAGCAG---------------------CCGCCGCAACAGCAGC...........................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCACAAACAGACAACTATGTAGGATTATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCCGGCACGTC---GGG---CAC....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGCAGC------------AACCGTTGCAGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGCCGGCACGTC---GGG---CACGGGC................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................AATGCACAGGC---AC---ACAATCAGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TGCCG--------GGG------GCA----------------------------------------------------------------------------------------------------------------ACAGCAG---CATGCACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TATGTAGGATTATCGCTTATACCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAATCAGCTGTTGGTGAGTGATGT......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---GCA--------------------------------------------------------------G---------------------CAGCAACA...............................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGCA---GCA--------------------------------------------------------------G---------------------CAGCAACATC.............................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---GCA--------------------------------------------------------------G---------------------CAGCAACATC.............................................................................................................................................................................................................................................23170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GCA--------------------------------------------------------------G---------------------CAGCAA.................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACA------------------ACCGTTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGGCTATCGCTTATACCAAATATTGTTGAGTTGCCA--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCGGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCATGCACAGCAGCAG------------------CAGCAGCAGCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GGG---------CACCA---------ACAAATGCCACCACATCCGCAATACCTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................GCCA--------GGG------GCA----------------------------------------------------------------------------------------------------------------GCGGCAG---CATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCCATAACTCAGCACCCACCC---ACA..............2811.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCAG------------------CAGCAGCAGC.................................................................................................................................................................................21200.0510000010
droYak3
AGCAAC---------------AACCATTGCAGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGACTATCGCTTATACCAAATATTGTTGAGTTGCCA--------GGG------GCG----------------------------------------------------------------------------------------------------------------GCAGCAG---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGCTGGTGAGTGATGTG---CT-------------ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGCAACATCACTCAC---GTTTTCACCATGCACAGCAGCAGCAGCA---GCAACAGCAGCCGCCGCAGCAGCAGCAACATCAATCATCATCGCCAGCACGTC---GAG---------CACCA---------ACAAATGCCACCACATCTTCAATACCTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCTCCC---ACACA------CAC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTAACATGC-----------------------CCAGCA------CTTCATCCA.....................................2711.00101000000000
........................................................................................................................................................................................................................................................................................................................................................ATCATCGCCACAGCAGCA---GC--------------------------------------------------------------------------------------AGC...................................................................................................................................................................................................................................................2311.00101000000000
...................................................................................ATACCAAATATTGTTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..CAAC---------------AACCATTGCAGCTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000
droEug1
AGCA------------------GCCGTTGCAACTGCAGCAGCAACACTTTTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATTTGCCA--------GCG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAGCACCGTGCACCGCTCCCAGTAGA------------AATACACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCCACAGCAGCA---GCA------GCAACAACAACAACA-----------------------------------------ACAACAACATCAGCAACACCAGCAGCAACATCACTCAC---GTTTTCATCATGCACAACAG---------------------------CAGCAGCAACAACATCAATCATCATCGCCGGCACGTC---GTC---------CACCA---------ACAAATGCCACCACATCTGCAATAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotal
No Reads
droBia1
AGCA------------------ACCGCTGCAACTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTAATACCAAATATTGTAGATTTGCCA--------GCG------GCA----------------------------------------------------------------------------------------------------------------GCAGCAGCAACTTGCACCACTCCCTCTAGA------------AATGTACAGGC---AC---ACAGTCAGCTGTTGGTGAGTGATGTG---TT-------------ATCATCGCAACACCAGCA---GCA------GCA-----------------------------------------------------A---------------------CAGCAACATCACTCAC---GTTTTCATCAGGCACAACAG---------------------------CAGCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GTC---------CACCA---------ACAAATCCGACCACATCTGCAATAACTAACATGC-----------------------CCAGCA------CTCCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotal
No Reads
droTak1
AGCA------------------GCCGCTGCAACTGCAGCAGCAACACTTTTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATCGTAGATTTGCCA--------GCG------GCA------------------------------------------------------------------------------------GCGGC----------------------AGCAGCAA---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCAACACCAGCA---GCA------ACAGCAACAACACCA-----------------------------------------G---------------------CAGCAGCATCACTCAC---GTTTTCA---------------------------------------------GCCGCAACATCAATCATCATCGCCGGCACGTC---GTC---------CACCA---------ACAAATGCCACCGCATCTGCAGTAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------CAC---SizeHit CountTotal NormTotal
No Reads
droEle1
AGCAGC---------------AACCATTGCTGCTACAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATTTGCCA--------GCA------GCG------------------------------------------------------------------------------------GCACC----------------------AGCAGCAA---CATGCACCACTCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCCACAGCAGC--------------------------------------------------------------------------------------------AACAACATCACTCAC---GTTTTCATCATGCACAGCCGAAGCAGCA---G---------CAACAGCAGCAGCAACAACATAAATCATCATCGCCGGCACGTC---GTC---------CACCA---------AC------------------AATAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCTGCACCCACCC---ACACA------ATC---SizeHit CountTotal NormTotal
No Reads
droRho1
AGCA------------------ACCATTGCAGCTACAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTAATACCAAATATTGTAGATATGCCA--------GCG------TCG----------------------------------------------------------------------------------------------------------------GCAGCAGCAACATGCACCACTCCCACTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCGCCACAGCAGCA---CC--------------------------------------------------------------------------------------AACAACATCACTCAC---GTTTTCATCATGCACAGCAG---------------------CAGCAGCATCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GAC---------CACCA---------ACAAATGCCACCGCATCCACTATAACTAACATGC-----------------------CCAGCA------CTTCATCCATAACTCAGCACCCACCC---ACACA------ATC---SizeHit CountTotal NormTotal
No Reads
droFic1
AGCA------------------ACCATTGCTGCTGCAGCAGCAACACTTCTCACAAACAGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GCA------GCA------ACAGCAAGCC------------------------------------------------------A------------AGCAGC----------------------AGCAACAG---CAAGCACAAATCCCAGTAGA------------AATGCACAGGC---AC---ACAATCAGCTGTTGGTGAGTGATGTC---TT-------------ATCATCACCGCAGCAGCA---ACA------CCAACAACAACAACA-----------------------------------------A---------------------CAGCAAAATCACTCAC---GTTTTCATCTTGTACAGCAACAACAGCAAAAGCAGCATCAGCATCAGCATCAGCAGCAACATCAATCATCATCGCCGGCACGTC---GAG---------CGGCA---------ACAAATGCCACCGCATCGGCAACAACTAACATGA-----------------------ACAGCA------CCTCATCCATTACTCAGCACCCACCCACAACACA------CAA---SizeHit CountTotal NormTotal
No Reads
droKik1
AGCA------------------ACAACAACAGCAGCAGCAGCAACAGA--------------------------------------------------AAGTGGCCGCTTCCTTAGCAATG-CATCAGCAGCAGCAACAAACGCTGCCCGCTCTGCAGCCAATTCCAGCCCTGAGCTCCATCTTCGAGCCGTCGACGGAGC------AACAGCAGCAGCAGCAGCAGTTGCAAATGCA-GCAACAA---CAATTG-----------------------------------------------GCCCAGCTGCTGATGT----------------------------------CACATCAGCA---GCAATCGCAACATCAACAGCAACAAATCATCACTGCCACGCAGCCGCCGCCATTGGCTGCTGCGAACAA------------------CAACAACAATAC-------------------------------------------------------------------------AAACACTGCCAACAACTCTACTGC---CAGCA---------------------------ACAGTAACAATAACCAAAATGCCTCGAATAATTTAAGCAACATCAGCAACA------CCACTGCCATACAGCCACAGCCACTG---CCACA------GG----SizeHit CountTotal NormTotal
No Reads
droAna3
AGCA------------------------------GCAACATCCACACTTTTCAGAAACAGACAACTATGTAGGGTTATCGCTCGTACCAAATATTGTAGATATGCCG--------GCCGCCACTTCGGTGAACGCGGCAACCGCCAT---------------------------------------------T----------------------------------------------GCTGCGG---CATGCACCTCTCCCAGTAGA------------ACTGCACAGAA---AC---ACGGCCAGCTGCTGGTGAGTGATAGC---TT-------------ATCATTGCCACAGCAGC--------------------------------------------------------------------------------------------AGCCACATCACTCACATCGCTCTCATCACGCACCTCAG---------------------------------CA---GCAT---CCATCTACGCCGACACGTC---GCCATGCCCCGACAGCA------------ACATCCACAACATCTT---CAGCCAACATAC-----------------------CCAGCA------CCTCATCCATAACTCAGCACCCACCC---ACTCCCCAGACCAC---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AACA------------------TCC------------------ACACTTTTCAGAAACAGACAACTATGTAGGGTTATCGCTCGTACCAAATATTGTAGATATGCCA--------GCCACCACTTCGGTGAACGCGGCAACCGCCAT---------------------------------------------T----------------------------------------------GCTGCGG---CATGCACCTCTCCCAGTAGA------------ACTGCACAGAC---AC---ACGGCCAGCTGCTGGTGAGTGATAGC---TT-------------ATCATTGCCGCAGCAGC--------------------------------------------------------------------------------------------AGCCACATCACTCGC---GCTCTCATCACGCACCTCAG---------------------------------CA---GCAT---CCATCCACGCCGACACGTC---GCCATGCCCCGGCAGCAACATCTGCA---ACATCCACAACATCTT---CAGCAAACATAC-----------------------CTAGCA------CCTCATCCATAACTCAGCACCCACCC---ACTCCCCAGACCAC---SizeHit CountTotal NormTotal
No Reads
dp5
AGCAACAGCAGCAGCTGCCACAACCATTGAAGCTGCAACAGCAACATTTCTCACAGACCGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GTG------GCA----------------------------------------------------------------------------------------------------------------GCACCAC---AATGCACCACCCCCAGTAGA------------CATGCACAGGC---ACAGAATCATCAGCTGTTGGTGAGTGATGCCACCAC-------------ATCATTGCCACAGCAGCA---GCA------ACA-----------------------------------------------------G---------------------CAGCAACATCAGTCAC---GTTTTCAGTAT------------------------------------------------------CCATCATCGCCGGCACGTC---GACATGT------------ATATGAG-------C-----CATCATCATCATCCAACATAC-----------------------CCAGCACTACCACTTCATCCATAACTCAGCACTCACCC---ACACA------CCT---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-------C-----CATCATCATCATCCA.......................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................GTGATGCCACCAC-------------ATCATTG............................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCA------ACA-----------------------------------------------------G---------------------CAGCAAC................................................................................................................................................................................................................................................20200.0510000010000
droPer2
AGCAACAGCAGCAGCTGCCACAACCATTGAAGCTGCAACAGCAACATTTCTCACAGACCGACAACTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GTG------GCA----------------------------------------------------------------------------------------------------------------GCACCAC---AATGCACCACCCCCAGTAGA------------CATGCACAGGC---ACAGAATCATCAGCTGTTGGTGAGTGATGCCACCAC-------------ATCATTGCCACAGCAGCA---GCA------ACA-----------------------------------------------------G---------------------CAGCAACATCAGTCAC---GTTTTCAGTAT------------------------------------------------------CCATCATCGCCGGCACGTC---GACATGT------------ATATGAG-------C-----CATCATCATCATCCAACATAC-----------------------CCAGCACTACCACTTCATCCATAACTCAGCACTCACCC---ACACA------CCTCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................TAGA------------CATGCACAGGC---ACA.................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
droWil2
ATCA------------------GCCATTGCAGCTACAGCAGAAACATTTCTCACAAACAGACAATTATGTAGGATTATCGCTTATACCAAATATTGTAGATATGCCA--------GCAACACCAACAGCAGCTGCAGCAGTCGCCGC---------------------------------------------CGCTGTAACAACAACGACAGCAGCGGCTGCAGCGGCAGCAACAACA-GCAACAG---CAACTAGTACACCAAGTAGA------------CACACACAGTCAACAC---ACAGCCAGCTGTTGGTGAGTGATGCT---AC-------------ATCATCTCATCAGCATCA---GCA------ACAACAACAACAACA-----------------------------------------GCAA------------------CAACAACAGCATACAC---GTTTCCATCATGCACATCA------------------------------------GCAACATCAATCATCATC---GTCACGTC---GCTATG---------------------------------TATATGAACCATTCAACATAC-----------------------CAAGCA------CTGCACCAACATCCCAGCACACACCC---ACACA------TTC---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................ACGACAGCAGCGGCTGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.....................................................................................................................................................................................................TAACAACAACGACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100010
..............................................................................................................................................................................................................................AGCGGCAGCAACAACA-GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17101000
...............................................................................................................................................................................................................................GCGGCAGCAACAACA-GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.17100010
.....................................................................................................................................................................................................................................................................................................................................................................CATCA---GCA------ACAACAACAACAACA-----------------------------------------GC...........................................................................................................................................................................................................................................................................2570.14100010
..................................................................................................................................................................................................................................GCAGCAACAACA-GCAACAG---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
......................................................................................................................................................................................................................................................................................................................................................................ATCA---GCA------ACAACAACAACAAC.......................................................................................................................................................................................................................................................................................................................21200.05101000
droVir3
AGCA------------------ACCGTTGCAGCTGCAGCAGCAACACTTTTCACAAACAGACAACTATGTAGGACTCTCGCTTATACCAAATATTATTGATATGCCA--------GCA------GCA----------------------------------------------------------------------------------------------------------------GCAACAA---CA---------CACAGTAGACTACACCCAACACATGCACCG------C---ACAATCAGCTGTTGGTGAGTGATGC----TGAACACGCGC-----------CAACAACAGCA---GCA------ACAGCAATAACTACG-----------------------------------------GC----------------------ACAGCAACAGTCAC---GCCAGCAACACG---------------------------------------------CACATCAATCA---------GCACGTC---GCCCAG---------CA---------CCAG---------------CTTCATCCACATTGC-----------------------ACAGCACC---ACCTCATC------CCAGCACACGACACCTACACA------CAT---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................TGTTGGTGAGTGATGC----TGAAC.............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ACAACAGCA---GCA------ACAGCAAT.............................................................................................................................................................................................................................................................................................................................2050.201000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---GCA------ACAGCAAT.............................................................................................................................................................................................................................................................................................................................19120.081000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA---GCA------ACAGCA...............................................................................................................................................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AGCA------------------GCCATTGCTGCTGCAGCAGCAGCACTTTTCACAAACAGACAACTATGTAGGATTGTCGCTTATACCAAATATTGTTGATGTGCCA--------GCA------GCA----------------------------------------------------------------------------------------------------------------GCAGCAG---CTGCTATCACACCCACTAGA---CAA------AAAACACAGCC---ACAACACAATCAGCTGTTGGTGAGTGATGC----TGAGCACACGC-----------CAACAACAATT---GC------A--------------------------------------------------------CC----------------------GCAGCAACAAGCAC---GCCACCATCACGCACATCA---------------------------------GCAACAACATCAATCA---------GCACGTC---GTTTAGCACCAACAACACCAACACCAACATCTACATCTCCATCTGCA---TCTACTTTGC-----------------------ACAGCA------CTACAT------CTCAGCACACACCC---ACACAGAACAGCAT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................GAGTGATGC----TGAGCACACGC-----------C...........................................................................................................................................................................................................................................................................................................................................................2111.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACACCAACACCAACA................................................................................................................2090.111000010
droGri2
AGCA---------------------------GCAACAGCAACAACACTTTTCACAAACAGACAACTATGTAGGACTATCGCTCATACCAAATATTGTTGATAAGCCA--------GCAACAGCAGCAGTA---GCAGCAACAGCA----------------------------------------------------------------------------------------------GCAGCAG---CAACTAGCACACCCAGTAGTAGACAC------AATGCACAGAACACAC---ACAATCAGCTGTTGGTGAGTGATGCT----GAGCATACGCCATCATCATCGCCACAGCAGCATCAGCA------ACAACAACAACATCA-----------------------------------------A---------------------CAACAATTACAGTCAC---GTTTCCATCATGCACAACA---------------------------------GCAACCACATCAATCA---------GCACGTC---GCATTGC------AC---------------------------------CACTAAACAT--------------------------CAGCA------CCACAT------CACAGCACACAACT---AATCA------TGC---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................GCAGCAGTA---GCAGCAACAGCA----------------------------------------------------------------------------------------------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.05110

Generated: 05/19/2015 at 05:20 AM