ID:

dsi_27008

 Coordinate:

3l:7235155-7235304 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7234651_7235154_-]; CDS [3l_7234651_7235154_-]; intron [3l_7235155_7236746_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGAGTTTAGTCATCATTGTGATTCAACTTTATAAATTCGCCATCTTGAGATCAATTTAAAATACAAACGGTTTTGAAAATTATATTTAGACAGTTTATAGAATTGCCGATTCCATAACTATTTTTTTTCCGCCTGCTGAACCAAATTAGTCACCCTCAGAATCCGCATGGTAACACCATATTTTTTGTCCCATCAACAGGCTACTCGTTCGTTGTCACCTGGATAACATCGTTAACAATGGTCATTGTG
**************************************************.....((((((((.......))))))))...........(((((...(((....(((.(((((....((((.(((..(((........)))..))).))))........))))).)))((((...)))))))...)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.....TTTGGTCATCATTGCGAT................................................................................................................................................................................................................................... 18 2 7 5.29 37 15 18 4 0 0 0
...............................................................................................................................................................................................................................ATAACATCGTTAACAATGGTCT..... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................TTGTCACCTGGATAACATCGT................. 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................CAGGCTACTCGTTCGTTGTCACCTGGAT......................... 28 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................TACTCGTTCGTTGTCACCTGGATAACA..................... 27 0 1 1.00 1 0 0 0 1 0 0
................TCGTGATCCAAGTTTATAAA...................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
..................................................................................................................................................................ACCGCTTGGGAACACCATA..................................................................... 19 3 15 0.07 1 0 0 0 0 1 0
.....TTTGGTCATCATTGCGA.................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 1
.....TTTGGTCATCATTGGGATG.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................GCTTGGGAACACCATA..................................................................... 16 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

AGCTCAAATCAGTAGTAACACTAAGTTGAAATATTTAAGCGGTAGAACTCTAGTTAAATTTTATGTTTGCCAAAACTTTTAATATAAATCTGTCAAATATCTTAACGGCTAAGGTATTGATAAAAAAAAGGCGGACGACTTGGTTTAATCAGTGGGAGTCTTAGGCGTACCATTGTGGTATAAAAAACAGGGTAGTTGTCCGATGAGCAAGCAACAGTGGACCTATTGTAGCAATTGTTACCAGTAACAC
**************************************************.....((((((((.......))))))))...........(((((...(((....(((.(((((....((((.(((..(((........)))..))).))))........))))).)))((((...)))))))...)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................AAAAAAAGGCGGACGACCCCGTTT........................................................................................................ 24 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................TTGGTTTAATCAGTGGGAGTCT......................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................TGAGCAAGCAACAGTGGACCT.......................... 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................GGGCGGACGACTTTGTTTCAT..................................................................................................... 21 3 3 1.00 3 0 3 0 0 0 0
.............................................................................................................................AAAAGGCGGACGACCCCGTTT........................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
................................................................................................ACATCTGAACGGCTAAAGTA...................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................AAAAAAAAGGGGGACGA................................................................................................................ 17 1 6 0.17 1 1 0 0 0 0 0
...............................................................................................................................................................................TGGTATAAAGCACAGAGTAG....................................................... 20 3 6 0.17 1 0 0 0 1 0 0
.....................................................TTAAATTTTATATCTGCCATA................................................................................................................................................................................ 21 3 11 0.09 1 0 0 0 0 1 0
...........................................................................................................................................................................................................TGAGCAAGCTTCACTGGAC............................ 19 3 12 0.08 1 0 0 0 0 0 1
.........................................................................................................................................................................................AATAGGGTAGTTGTGCG................................................ 17 2 15 0.07 1 1 0 0 0 0 0
..............................................................................................................................AAAGGCGGACGACCCCGTTT........................................................................................................ 20 3 16 0.06 1 1 0 0 0 0 0
.......................................................................................................................................................................................AAAACAAGGTAGTTG.................................................... 15 1 20 0.05 1 0 0 0 0 0 1
...............................................................................................................................................................................................GTAGGTGTCCTATGAGC.......................................... 17 2 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................AAAAGGCGCACCACTTG............................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0
AGCTCCAATCTGTAGT.......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 12:17 AM