ID:

dsi_26971

Coordinate:

3r:4483540-4483689 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4483690_4485545_-]; exon [3r_4483690_4485841_-]; intron [3r_4469388_4483689_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GACTACGAGGGGGCCCGCGGCGAACTTGTCTTCGAAAACAATGAATCCGAGTGAGTTGCAATGTTTTATTAATTATTTACAAATTTGAATATTTCTGCATTAACTAATTTATTTCTGAATAGGCCTTAATGGCTTAACACAACTCTACACAAATTCTGATAAGATATTTCCTGATCCGATTTCAAAGTATTGAATATCTCATCATATATTTAATATTTATGCTGGCTTCCAACCAACTCGATAGTAAGCC ************************************************((((((((.(((((.........((((((......)))))).....)))))..................((((((.....))))))...)))))).)).........((((.(((((((..(((.......))))))))))...))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
......GAGGGGGCCCGCGGCGAACTT...............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.................................................AGTGATTGGCAATGTTTTATT....................................................................................................................................................................................	21	2	1	1.00	1	0	0	1	0
.............................CTTCGAAAACAATGAATCCGAGAAATT..................................................................................................................................................................................................	27	3	1	1.00	1	0	1	0	0
.............................CTTCGAAAACAATGAATCCGAGAAAT...................................................................................................................................................................................................	26	3	1	1.00	1	1	0	0	0
......................................................................................................................................TAACAGAACTCTCCATAAATTC..............................................................................................	22	3	3	0.33	1	0	1	0	0
.......................................AATGAATCCGGATGATTTGC...............................................................................................................................................................................................	20	3	13	0.08	1	0	1	0	0
.......................AGTTGTCTTCGAAAA....................................................................................................................................................................................................................	15	1	17	0.06	1	0	0	0	1

Anti-sense strand reads

CTGATGCTCCCCCGGGCGCCGCTTGAACAGAAGCTTTTGTTACTTAGGCTCACTCAACGTTACAAAATAATTAATAAATGTTTAAACTTATAAAGACGTAATTGATTAAATAAAGACTTATCCGGAATTACCGAATTGTGTTGAGATGTGTTTAAGACTATTCTATAAAGGACTAGGCTAAAGTTTCATAACTTATAGAGTAGTATATAAATTATAAATACGACCGAAGGTTGGTTGAGCTATCATTCGG ************************************************((((((((.(((((.........((((((......)))))).....)))))..................((((((.....))))))...)))))).)).........((((.(((((((..(((.......))))))))))...))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries
.......................................................................................................................................................................ATGGACTAGGCTCCAGTTT................................................................	19	3	13	2.92	38	23	0	7	8	0	0
.........................................................................................................................................................................GGACTAGGCTCCAGTTT................................................................	17	2	12	2.75	33	26	0	3	3	0	1
.........................................................................................................................................................................GGACTAGGCTCCAGTT.................................................................	16	2	20	1.65	33	30	0	3	0	0	0
......................................................................................CTTATAAAGACGTAATTG..................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................GGACTAGGCTCCAGTTTC...............................................................	18	2	4	0.75	3	3	0	0	0	0	0
...................................................................................................................................................................TAGAAAGGACTGGGCTAATGT..................................................................	21	3	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................................TAGTGTTGAGATGTGTT..................................................................................................	17	1	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................TCGGCTAAAGTTTCATTA...........................................................	18	2	10	0.10	1	0	0	0	0	1	0
..........................................................................................................................................................................GACTAGGCTCCAGTTTC...............................................................	17	2	10	0.10	1	1	0	0	0	0	0

Generated: 04/24/2015 at 08:43 AM