ID:

dsi_26948

 Coordinate:

3r:6345045-6345194 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.5 -19.4 -19.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCCGCACTTGGATAAACATAAGAATCAGTTTTTTAGTTTTTACAATTGGGTTCTTTTTATAAATCATTGATTGTTCAGACAAGTGTCTCGCTGCAAAGTATCTTGCTCTTTGTTTTTTAGATAAGAAATATATTGGTGCAATTTTAAATGAAGTGATCAATCTGTTTGATGATTTTCACTCCCTGCCA
**************************************************...(((((.......(((((((....((((.....((((((..((((......((......))........))))..))))))))))....))))))).))))).(((.((((((((.(((.........))))))))..))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 M023
head
 O001
Testis
.............................................................................................................................................................................................................................ATCTGTTTGATGATTTTCACTCCCTGC.. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................TTGGATCGGGATTCTTCTCGGAGGT............................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................ATCGGGATTCTTCTCGGAGGTTTACAAGG....................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATATTGGTGCAATTTTAAATGAAGTG................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................AATCATTGATTGTTCAGA............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TTGGGTTCTTTTTAT................................................................................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TATTGGGTTCTTTTTATAAAACT.......................................................................................................................... 23 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
ACTTCGTCAAGGAGA........................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................TGGATCGGGCTTCTTC....................................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...................TGGATATGGATTCTTCACGG................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
................AACTGGATATGGATTCTTC....................................................................................................................................................................................................................... 19 3 20 0.20 4 0 0 0 0 0 0 0 0 4 0
......................................................................................TCAGTTTTGTAGTTTTTACCT............................................................................................................................................... 21 3 20 0.15 3 0 0 0 0 3 0 0 0 0 0
.....................................................................................TTCAGTTTTGTAGTTTTTACC................................................................................................................................................ 21 3 20 0.15 3 0 0 0 0 3 0 0 0 0 0
...............................................................................................................................................................................................................AAATGAAGTGATCAAGCAGCT...................... 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
.........................GGGGTCCTTCTCGGAGGTGT............................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
....................GGATATGGATTCTTCACGG................................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 0 0 0 2
..........GGAGAAAATGGGATCG................................................................................................................................................................................................................................ 16 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................TGATTGATCAGACACGT........................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................TATTGGTTTTTTAGATTAGAAA............................................................ 22 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................GTTCAGGCAGGTGTCT.................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TGAAGCAGTTCCTCTTTTAACCTAGCCCTAAGAAGAGCCTCCAAATGTTCCATTCACTGTTAAGGCGTGAACCTATTTGTATTCTTAGTCAAAAAATCAAAAATGTTAACCCAAGAAAAATATTTAGTAACTAACAAGTCTGTTCACAGAGCGACGTTTCATAGAACGAGAAACAAAAAATCTATTCTTTATATAACCACGTTAAAATTTACTTCACTAGTTAGACAAACTACTAAAAGTGAGGGACGGT
**************************************************...(((((.......(((((((....((((.....((((((..((((......((......))........))))..))))))))))....))))))).))))).(((.((((((((.(((.........))))))))..))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................................ACTACTGAAAGTGAGG...... 16 1 4 0.25 1 1 0 0
......................................................................................AGTCAAAACATCAAAAATGGAA.............................................................................................................................................. 22 3 10 0.10 1 0 1 0
...................................................................................................................................................................GAAGGAGAAACAAAAAA...................................................................... 17 1 12 0.08 1 0 0 1
......................................................................................AGTCAAAACATCAAAAATGGA............................................................................................................................................... 21 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:6344995-6345244 + dsi_26948 ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAAT--T------------------------------C------------------------CGCAC--TTG----------GA----------------TAAACATAA-GAATCAG-TTTTTTAGTTTTTACAAT-----------------T-------GG-GTTCTT-------TTTA-------------------------------------------TAAATCATTGATTGTTCA--------------------------------------------------------------------------------------GACAAGT------------------------------GTCTCGCTGCAAAGTATCTTGCTCTTTG----------------------TTTTTTAGATAAGAAATATA-TTGGTGC--AATTTTAAATGAAGTGATCAAT-CTGTTTGATGATTTTCACTCCCTGCCA
droSec2 scaffold_77:25872-26132 + ACTTCGTCAAGGAGAAAATTGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGTGACAAT--T------------------------------C------------------------CGCAC--TTG----------GA----------------TAAACATAA-GAATCAA-TTCTTTAGTTTTTACAAT-----------------T-------GG-TTTCTT-------TTTA-------------------------------------------TAAATCATTGATTGTTCA--------------------------------------------------------------------------------------GACAAGT------------------------------ATCTCGCTGCAAAGTATCTTGCTCGCGAGCGAATCTTTG-----------TTTCTCAGATAAGAAATATA-TTGGTAC--AATGTTAAATGAAGTGATCAAT-CTGTTTGATGATTTTCACTCCCTGCCA
dm3 chr3R:14912924-14913176 - ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAAT--T------------------------------C------------------------CGCAC--TTG----------AA----------------TAAGCATAA-GAATCAA-TTCTTTAGTTTTTACAAT-----------------T-------GG-TTTCATTTTTTTATTTT-------------------------------------------TAAATCATTGA-----------------------------------------------------------------------------------------------CACGT------------------------------ATCTCGCTGAAAAGTATCTTGCTCGTGGGC-----------------GCATGTCTCAGATAAGAAATATT-TTGGTAC--ACTGTTAAATGAAGTGATCAAT-CTGTTTGATGATTTTCACTCCCTGCCA
droEre2 scaffold_4770:6717115-6717387 + ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGTGACAAT--T------------------------------G------------------------CGCAC--TTG----------GA----------------TAAACATAA-GAATCACCTCCTTTAGTTTTTACAAC-----------------T-------GG-TTTCTC-------TTTT-------------------------------------------TAAATCATTGATTGTTTA--------------------------------------------------------------------------------------GCCTACT------------------------------GT-TCAATGAAAAATATCTGGCTCACAATCGGGTCTTGGTGATAGGCGAATGTCTCAGATAAGAAATATTTTTGGCAC--AAACGAAAATGAAGTGAACAAT-CTGTTTGACGGTTTTCACTCCCTGCAA
droYak3 3R:3596825-3597098 - ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGCGACAAT--T------------------------------G------------------------CGCAC--ATG----------GG----------------TAAACATAA-GAATCAC-TCTTTTAGTTTTTACAAT-----------------T----TTTGG-TTTCAT-------TTTT-------------------------------------------TAAATCATTGATTGTTTA--------------------------------------------------------------------------------------GCCTACT------------------------------GT-TCAATGAAAAATATCTTGCTCATAGGCGGGTCTTTGTGATAGCGGTATGTTTTAGATAAAAAATATT-TTGGCAC--AAACGAAAATGAAGTGATCAAA-CTGTTTGCTGGTTTTCACTCCCTGCAA
droEug1 scf7180000409804:1157047-1157353 - ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGATAGT--T------------------------------C------------------------A-AAC--T-----------------------------------ATAT-GGAATATGTAGTTAGGTTTTTACAAA-----------------T-------GA-TTTGTG-------ATTTAAGTTCTAAAGGGAGAGTGAGTCACTGATGGCTGGAAGAGGTTTCAGTTATTGATTATC-A------------------------------------------------------------------------G-CAGAGGAGAGTTGATGATTCTTACAAGAAAGATATCTTTTTAAAAGAGAATCTCAGTACAA-------------------------------ATTAGTATGTCG-----------TACT-TTGGCATTGAAATGAAAAT-AAGTGATCAAT-CTGCTTGATATTTTTGACTCCATGCAA
droBia1 scf7180000302402:667254-667316 - ACTTCGTCAAGGAGAAAATCGGATCGGGATTTTTCTCGGAGGTTTACAAGGTGAGTGTCAGT--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415256:408660-408903 - ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTCTCAGAGGTTTACAAGGTAAGATAAGAA----AATT-------------------------ACAGGAATAAGTGTATTAGTT------------------------------------------TAAGGATAGGGAATCAA-TGAATCAATCTATATA------------------------------TTCCATGTTCATATC---------------------------------------------A-----------------AAT-----G-------A-------------------------------------------------------------------------AATCTTAGATAAAAGATATCGT--------------TCTGCGAAA-------------------------------AGTAGTATGTCAAAGATAAGAAATATT-TTGGCAT--A----------AAATGATCAAT-CTGTTTGCCAC-ATTTTCTCCGTGCAA
droEle1 scf7180000490994:669690-669940 - ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTCTCAGAGGTCTACAAGGTAAGCGCCTGC--TTTTCTATAATTTTCTAATGGAGTACATTTT----------------------------AAAGTGATAAATATATAGGTATGGGGATTTTAATTTAGAGA------------------------------------------------------------------------------------------------------------------------------------------------GATTTCTGATATGAAAGAATATTCGTTTTTATGATAAATGGGTCGCTGTTAAAAATAATATTTAG-TAGA----------------TCACATATAAGATCTCTTTTAAAAACAG--------------------------------------------------------------------------------------------AATTGA-----------TGATGCTTTACAT--------A
droRho1 scf7180000777280:9197-9481 + ACTTCGTCAAGGAGAAAATTGGATCAGGATTTTTCTCGGAGGTTTACAAGGTAAGTGACAGTGGAAATTTACAATTTTGTAACACAAATCAACTT-------------------------AGC--AGTTATAAGTATGTAGGTATAGGG------------------------------------GCTTACAGT-----------------TAATTATTAATTTCCA-ATTTCCAGCTT-------------------------------------------T-----------------AATGGAGAAAT-TCGGAAATTTTAGAATTCCGG----------------------GATAAAAATATAAATTAAAAAGT-----------TTCT----GTTCAAAGACT------------------------------------------------------------------------------------T-TTTACAA--AAACATGGATATTATGATATTT-CTGCTTGATAT-TTTTTCTCCGTGCAA
droFic1 scf7180000453812:123216-123365 + ACTTCGTCAAGGAGAAAATCGGATCGGGATTCTTCTCGGAGGTTTACAAGGTGAGTGGCATA--------------------------------------AATAAATAGATTAGTTACCCAGCAAAGTAGTGAGGATATAGGTATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAG---------------------------------------------------------TATATA-ATGGCAA--AAA---------------------------ATAAGTTTTTCTTCAAGCAA
droKik1 scf7180000300058:178890-179069 + ATTTTGTTAAGGAGAAAATCGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGTCC--------------------------------------------------------------AGCAC--TTGTGAATATG--AT----------------TA-------------------CATAGCTTTTATAAGGTTATAATAATAAGATAT-------GG-TTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTAAT--------------------------------CATT-GTGGCAG--ATA----AAT-CAATGATTGATAGTGTGTGATA--TTTATCTTTGTGTAA
droAna3 scaffold_13340:17546361-17546419 - ATTTCGTCAAGGAGAAGATTGGCTCGGGATTCTTCTCGGAGGTGTACAAGGTGAGTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396721:387789-387845 + ATTTCGTCAAGGAGAAAATTGGCTCGGGATTTTTTTCGGAGGTGTACAAGGTGAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:6851231-6851295 - ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTTTACAAGGTGAGTGGCAGA--T------------------------------C------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:686728-686792 - ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTCTACAAGGTGAGTGGCAGA--T------------------------------C------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:2057463-2057520 + ATTTTGTCAAGGAAAAAATTGGCTCTGGATTTTTCTCGGAGGTTTACAAGGTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12822:28087-28143 - ATTTTGTCAAGGAAAAAATTGGTTCCGGGTTTTTCTCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:32682983-32683084 - ACTTTGTTAAGGAAAAAATCGGTTCAGGGTTTTTCTCCGAAGTTTACAGGGTAAGTACGAAA--C------------------------------C------------------------A-------------------------------------------TAA-G----------CTAACACTTTACAAT-----------------T-------AT-ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATACAT
droGri2 scaffold_15074:3707947-3708034 + ATTTTGTCAAGGAGAAAATCGGTTCAGGTTTTTTCTCGGAGGTTTACCGGGTAAGTGGCGAA--C------------------------------A------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTCCTTTGTATAATAATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAAT--T------------------------------C------------------------CGCAC--TTG----------GA----------------TAAACATAA-GAATCAG-TTTTTTAGTTTTTACAAT-----------------T-------GG-GTTCTT-------TTTA-------------------------------------------TAAATCATTGATTGTTCA--------------------------------------------------------------------------------------GACAAGT------------------------------GTCTCGCTGCAAAGTATCTTGCTCTTTG----------------------TTTTTTAGATAAGAAATATA-TTGGTGC--AATTTTAAATGAAGTGATCAAT-CTGTTTGATGATTTTCACTCCCTGCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-CTGTTTGATGATTTTCACTCCCTGC..2712.00200020000000000000
..................TTGGATCGGGATTCTTCTCGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
......................ATCGGGATTCTTCTCGGAGGTTTACAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-TTGGTGC--AATTTTAAATGAAGTG..................................2611.00101000000000000000
............................................................................................................................................................................................................................................................................................AATCATTGATTGTTCA--------------------------------------------------------------------------------------GA.....................................................................................................................................................................1811.00100100000000000000
.................................................................................................................................................................................................T-----------------T-------GG-GTTCTT-------TTTA-------------------------------------------T..............................................................................................................................................................................................................................................................................1511.00100000010000000000
ACTTCGTCAAGGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
droSec2
ACTTCGTCAAGGAGAAAATTGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGTGACAAT--T------------------------------C------------------------CGCAC--TTG----------GA----------------TAAACATAA-GAATCAA-TTCTTTAGTTTTTACAAT-----------------T-------GG-TTTCTT-------TTTA-------------------------------------------TAAATCATTGATTGTTCA--------------------------------------------------------------------------------------GACAAGT------------------------------ATCTCGCTGCAAAGTATCTTGCTCGCGAGCGAATCTTTG-----------TTTCTCAGATAAGAAATATA-TTGGTAC--AATGTTAAATGAAGTGATCAAT-CTGTTTGATGATTTTCACTCCCTGCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............AAAATTGGATCGGGCTTCTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................AATTGGATCGGGCTTCTTCTCGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
................AATTGGATCGGGCTTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..TTCGTCAAGGAGAAAATTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............GAAAATTGGATCGGGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................TCGGGCTTCTTCTCGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.....GTCAAGGAGAAAATTGGATCGGGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
................AATTGGATCGGGCTTCTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAAT--T------------------------------C------------------------CGCAC--TTG----------AA----------------TAAGCATAA-GAATCAA-TTCTTTAGTTTTTACAAT-----------------T-------GG-TTTCATTTTTTTATTTT-------------------------------------------TAAATCATTGA-----------------------------------------------------------------------------------------------CACGT------------------------------ATCTCGCTGAAAAGTATCTTGCTCGTGGGC-----------------GCATGTCTCAGATAAGAAATATT-TTGGTAC--ACTGTTAAATGAAGTGATCAAT-CTGTTTGATGATTTTCACTCCCTGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................GATTCTTCTCGGAGGTTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AAATTGGATCGGGATTCTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000000000
.................ATTGGATCGGGATTCTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAAAATTGGATCGGGATTCTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................TTTACAAT-----------------T-------GG-TTTCATTTTTTTATTTT-------------------------------------------TAAA...........................................................................................................................................................................................................................................................................3211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AAATTGGATCGGGATTCTTCTCGGAGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATCGGGATTCTTCTCGGAGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GGGATTCTTCTCGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GATCGGGATTCTTCTCGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAAAATTGGATCGGGATTCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAAAATTGGATCGGGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................TCGGGATTCTTCTCGGAGGTTTACAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------ATCTCGCTGAAAAGTATC................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................TTGGATCGGGATTCTTCTCGGAGGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGGATCGGGATTCTTCTCGGAGGTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAAAATTGGATCGGGATTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...TCGTCAAGGAGAAAATTGGATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATTGGATCGGGATTCTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTCGTCAAGGAGAAAATTGGATCGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--ACTGTTAAATGAAGTGATCAAT-CTGT.......................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATTGGATCGGGATTCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAGCATAA-GAATCAA-TTCT.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATTGGATCGGGATTCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............GAAAATTGGATCGGGATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droEre2
ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGTGACAAT--T------------------------------G------------------------CGCAC--TTG----------GA----------------TAAACATAA-GAATCACCTCCTTTAGTTTTTACAAC-----------------T-------GG-TTTCTC-------TTTT-------------------------------------------TAAATCATTGATTGTTTA--------------------------------------------------------------------------------------GCCTACT------------------------------GT-TCAATGAAAAATATCTGGCTCACAATCGGGTCTTGGTGATAGGCGAATGTCTCAGATAAGAAATATTTTTGGCAC--AAACGAAAATGAAGTGAACAAT-CTGTTTGACGGTTTTCACTCCCTGCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGATAGGCGAATGTCTCA.........................................................................2311.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGCTCACAATCGGGTCTTGGTGAT.......................................................................................2811.0011000000
.............GAAAATTGGATCGGGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CTGTTTGACGGTTTTCACTCCCT....2411.0010100000
..........GGAGAAAATTGGATCGGGATTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
droYak3
ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGCGACAAT--T------------------------------G------------------------CGCAC--ATG----------GG----------------TAAACATAA-GAATCAC-TCTTTTAGTTTTTACAAT-----------------T----TTTGG-TTTCAT-------TTTT-------------------------------------------TAAATCATTGATTGTTTA--------------------------------------------------------------------------------------GCCTACT------------------------------GT-TCAATGAAAAATATCTTGCTCATAGGCGGGTCTTTGTGATAGCGGTATGTTTTAGATAAAAAATATT-TTGGCAC--AAACGAAAATGAAGTGATCAAA-CTGTTTGCTGGTTTTCACTCCCTGCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................TTTTTCGGAGGTTTACAAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATAGCGGTATGTTTTAGA.......................................................................2311.00100000010000
.............GAAAATTGGATCGGGATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTTGTGATAGCGGTAT...............................................................................2011.00100000010000
.................ATTGGATCGGGATTTTTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....GTCAAGGAGAAAATTGGATCGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............GAAAATTGGATCGGGATTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.........................................GTTTACAAGGTAGGCGACAAT--T------------------------------G------------------------CGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTGCTCATAGGCGG..................................................................................................1911.00100001000000
............AGAAAATTGGATCGGGATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
................AATTGGATCGGGATTTTTTTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
.............GAAAATTGGATCGGGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCGGTATGTTTTAGATAAA...................................................................2211.00100100000000
droEug1
ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGATAGT--T------------------------------C------------------------A-AAC--T-----------------------------------ATAT-GGAATATGTAGTTAGGTTTTTACAAA-----------------T-------GA-TTTGTG-------ATTTAAGTTCTAAAGGGAGAGTGAGTCACTGATGGCTGGAAGAGGTTTCAGTTATTGATTATC-A------------------------------------------------------------------------G-CAGAGGAGAGTTGATGATTCTTACAAGAAAGATATCTTTTTAAAAGAGAATCTCAGTACAA-------------------------------ATTAGTATGTCG-----------TACT-TTGGCATTGAAATGAAAAT-AAGTGATCAAT-CTGCTTGATATTTTTGACTCCATGCAASizeHit CountTotal NormTotal
No Reads
droBia1
ACTTCGTCAAGGAGAAAATCGGATCGGGATTTTTCTCGGAGGTTTACAAGGTGAGTGTCAGT--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTCTCAGAGGTTTACAAGGTAAGATAAGAA----AATT-------------------------ACAGGAATAAGTGTATTAGTT------------------------------------------TAAGGATAGGGAATCAA-TGAATCAATCTATATA------------------------------TTCCATGTTCATATC---------------------------------------------A-----------------AAT-----G-------A-------------------------------------------------------------------------AATCTTAGATAAAAGATATCGT--------------TCTGCGAAA-------------------------------AGTAGTATGTCAAAGATAAGAAATATT-TTGGCAT--A----------AAATGATCAAT-CTGTTTGCCAC-ATTTTCTCCGTGCAASizeHit CountTotal NormTotal
No Reads
droEle1
ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTCTCAGAGGTCTACAAGGTAAGCGCCTGC--TTTTCTATAATTTTCTAATGGAGTACATTTT----------------------------AAAGTGATAAATATATAGGTATGGGGATTTTAATTTAGAGA------------------------------------------------------------------------------------------------------------------------------------------------GATTTCTGATATGAAAGAATATTCGTTTTTATGATAAATGGGTCGCTGTTAAAAATAATATTTAG-TAGA----------------TCACATATAAGATCTCTTTTAAAAACAG--------------------------------------------------------------------------------------------AATTGA-----------TGATGCTTTACAT--------ASizeHit CountTotal NormTotal
No Reads
droRho1
ACTTCGTCAAGGAGAAAATTGGATCAGGATTTTTCTCGGAGGTTTACAAGGTAAGTGACAGTGGAAATTTACAATTTTGTAACACAAATCAACTT-------------------------AGC--AGTTATAAGTATGTAGGTATAGGG------------------------------------GCTTACAGT-----------------TAATTATTAATTTCCA-ATTTCCAGCTT-------------------------------------------T-----------------AATGGAGAAAT-TCGGAAATTTTAGAATTCCGG----------------------GATAAAAATATAAATTAAAAAGT-----------TTCT----GTTCAAAGACT------------------------------------------------------------------------------------T-TTTACAA--AAACATGGATATTATGATATTT-CTGCTTGATAT-TTTTTCTCCGTGCAASizeHit CountTotal NormTotal
No Reads
droFic1
ACTTCGTCAAGGAGAAAATCGGATCGGGATTCTTCTCGGAGGTTTACAAGGTGAGTGGCATA--------------------------------------AATAAATAGATTAGTTACCCAGCAAAGTAGTGAGGATATAGGTATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAG---------------------------------------------------------TATATA-ATGGCAA--AAA---------------------------ATAAGTTTTTCTTCAAGCAASizeHit CountTotal NormTotal
No Reads
droKik1
ATTTTGTTAAGGAGAAAATCGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGTCC--------------------------------------------------------------AGCAC--TTGTGAATATG--AT----------------TA-------------------CATAGCTTTTATAAGGTTATAATAATAAGATAT-------GG-TTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTAAT--------------------------------CATT-GTGGCAG--ATA----AAT-CAATGATTGATAGTGTGTGATA--TTTATCTTTGTGTAASizeHit CountTotal NormTotal
No Reads
droAna3
ATTTCGTCAAGGAGAAGATTGGCTCGGGATTCTTCTCGGAGGTGTACAAGGTGAGTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................TCGGGATTCTTCTCGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...............AGATTGGCTCGGGATTCTTCTCGGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
................GATTGGCTCGGGATTCTTCTCGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.............GAAGATTGGCTCGGGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
ATTTCGTCAAGGAGAAAATTGGCTCGGGATTTTTTTCGGAGGTGTACAAGGTGAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTTTACAAGGTGAGTGGCAGA--T------------------------------C------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....GTCAAGGAGAAAATTGGTTCTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........AAGGAGAAAATTGGTTCTGGATTTTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
....................GGTTCTGGATTTTTCTCGGAGGTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
................AATTGGTTCTGGATTTTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............GAAAATTGGTTCTGGATTTTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
...............AAATTGGTTCTGGATTTTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
droPer2
ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTCTACAAGGTGAGTGGCAGA--T------------------------------C------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................GTTCTGGATTTTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
...........................GATTTTTCTCGGAGGTCTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................ATTGGTTCTGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................GGTTCTGGATTTTTCTCGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....TGTCAAGGAGAAAATTGGTTCTGGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
ATTTTGTCAAGGAAAAAATTGGCTCTGGATTTTTCTCGGAGGTTTACAAGGTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........AAGGAAAAAATTGGCTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
......................................GAGGTTTACAAGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................ATTGGCTCTGGATTTTTCTCGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
....................GGCTCTGGATTTTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................ATTTTTCTCGGAGGTTTACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.................ATTGGCTCTGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................GATTTTTCTCGGAGGTTTACAAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.................ATTGGCTCTGGATTTTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
............AAAAAATTGGCTCTGGATTTTTCTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
droVir3
ATTTTGTCAAGGAAAAAATTGGTTCCGGGTTTTTCTCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.TTTTGTCAAGGAAAAAATTGGTTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28175.007500380623000010000000000001010201000000014300000000000000000001020
...TTGTCAAGGAAAAAATTGGTTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26155.005500102101200000000000003001204060300001017100000000000000000000100
.TTTTGTCAAGGAAAAAATTGGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.005000321042000000300000000011010000000000014400000000000000000000050
.TTTTGTCAAGGAAAAAATTGGTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25144.00441030410000001020000000000000000001000001100000000000000000000020
.TTTTGTCAAGGAAAAAATTGGTTCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.0030008031100000010000000000100030100000009200000000000000000000000
.TTTTGTCAAGGAAAAAATTGGTTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26118.00180012030000000000000000000000000000000001200000000000000000000000
..TTTGTCAAGGAAAAAATTGGTTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27115.0015002005300000000000000010001030000000000000000000000000000000000
.................................TCTCAGAAGTTTACAGGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23114.0014002020100000010000000000000000000001003200000000000000000000020
....TGTCAAGGAAAAAATTGGTTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25113.0013000000300000000000001000002030300000000100000000000000000000000
...................................TCAGAAGTTTACAGGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21111.0011001010100000010000001000000000000000002300000000000000000000010
...TTGTCAAGGAAAAAATTGGTTCCGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.0010000001100000100000000000101020100001001000000000000000000000000
...TTGTCAAGGAAAAAATTGGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2219.009000007100000000000000000000000000000000100000000000000000000000
....TGTCAAGGAAAAAATTGGTTCCGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.008000000300000000000000000002030000000000000000000000000000000000
...TTGTCAAGGAAAAAATTGGTTCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.007000000300000000000001000200000000100000000000000000000000000000
...................................TCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2217.007003010000000000000000000000010100000001000000000000000000000000
.................................TCTCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2416.006004010000000000000000000000000000000001000000000000000000000000
..............................TTTTCTCAGAAGTTTACAGGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.006001000000000010000001000000000000000000300000000000000000000000
....TGTCAAGGAAAAAATTGGTTCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.005000000000000000000000001001020000000001000000000000000000000000
..TTTGTCAAGGAAAAAATTGGTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.005003100000000000000000000000010000000000000000000000000000000000
.............................TTTTTCTCAGAAGTTTACAGGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.004001000000000000000000000000010000100000100000000000000000000000
....TGTCAAGGAAAAAATTGGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004000000000000000000000001000020100000000000000000000000000000000
.TTTTGTCAAGGAAAAAATTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.004002100000000000000000000000000000000001000000000000000000000000
...................................TCAGAAGTTTACAGGGTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000010000000000000000000000000000000000200000000000000000000000
.TTTTGTCAAGGAAAAAATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000011100000000000000000000000000000000000000000000000000000000
...............................TTTCTCAGAAGTTTACAGGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000000000000000000000000000030000000000000000000000000000000000
................................TTCTCAGAAGTTTACAGGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003000010000000000000000000000000100000000100000000000000000000000
.................................TCTCAGAAGTTTACAGGGTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000010000000001000000000000000000000000
...............................TTTCTCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2612.002001000000000000000000000000010000000000000000000000000000000000
...TTGTCAAGGAAAAAATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000200000000000000000000000000000000000000000000000000000000
....TGTCAAGGAAAAAATTGGTTCCGGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.....GTCAAGGAAAAAATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
...............AAATTGGTTCCGGGTTTTTCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
.........AGGAAAAAATTGGTTCCGGGTTTTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................CCGGGTTTTTCTCAGAAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
.................................TCTCAGAAGTTTACAGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
...TTGTCAAGGAAAAAATTGGTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
...TTGTCAAGGAAAAAATTGGTTCCGGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
........AAGGAAAAAATTGGTTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
................................TTCTCAGAAGTTTACAGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
..............................TTTTCTCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2711.001001000000000000000000000000000000000000000000000000000000000000
.....GTCAAGGAAAAAATTGGTTCCGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
..TTTGTCAAGGAAAAAATTGGTTCCGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
....TGTCAAGGAAAAAATTGGTTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
..TTTGTCAAGGAAAAAATTGGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
..TTTGTCAAGGAAAAAATTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................TTGGTTCCGGGTTTTTCTCAGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
...TTGTCAAGGAAAAAATTGGTTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
............AAAAAATTGGTTCCGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
....TGTCAAGGAAAAAATTGGTTCCGGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
.............AAAAATTGGTTCCGGGTTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
........AAGGAAAAAATTGGTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.TTTTGTCAAGGAAAAAATTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........GGAAAAAATTGGTTCCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................TGGTTCCGGGTTTTTCTCAGAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..TTTGTCAAGGAAAAAATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.TTTTGTCAAGGAAAAAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
.TTTTGTCAAGGAAAAAATTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...TTGTCAAGGAAAAAATTGGTTCCGGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000100000000000000000000000000000000000000000000000000000000
................................TTCTCAGAAGTTTACAGGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2511.001000000100000000000000000000000000000000000000000000000000000000
droMoj3
ACTTTGTTAAGGAAAAAATCGGTTCAGGGTTTTTCTCCGAAGTTTACAGGGTAAGTACGAAA--C------------------------------C------------------------A-------------------------------------------TAA-G----------CTAACACTTTACAAT-----------------T-------AT-ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATACATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................TTTTCTCCGAAGTTTACAGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
ATTTTGTCAAGGAGAAAATCGGTTCAGGTTTTTTCTCGGAGGTTTACCGGGTAAGTGGCGAA--C------------------------------A------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTCCTTTGTATAATAATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:55 PM