ID:

dsi_26941

 Coordinate:

3l:8084630-8084779 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_8084780_8084840_-]; exon [3l_8084780_8084840_-]; intron [3l_8081859_8084779_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGAAGTTGAGAAAATGAAGCGTTTATCGTATCCTGGCCCAGATTTCGAGGTGAGTCCAAGTTTACAGCTCTCGTAAAAGCAAAAGCGTAATCGCATTCACGGTCATTGCTGCTCAAATCGGGGCCAAACACGTTCCCACTGAAAATGCAAACAATCGCCGAACGAGTGGCGCGAAATTCGTATAAACGATTTGCGTGCGATTTGTCGGCGTCTTAAAATAAACCGCCTGATTCGACGTTGTGTCAGATA
**************************************************(((((......)))))....(((((..........(((....))).....((((.((((.((((((....(((((.......)))))...)))....)))..)))).)))).)))))..(((((.((.((((....)))).)).))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................................TGCGTGCGATCTGTCGG......................................... 17 1 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................TGCGTGCGATCTGTCG.......................................... 16 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................TTGCGTGCGATTTGTCGGC........................................ 19 0 1 1.00 1 0 0 1 0 0
.....................GTTTATCGTATCCTGGCC................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................GCGTGCGATCTGTCG.......................................... 15 1 4 1.00 4 4 0 0 0 0
................................................................................................................................................................................................TGCGTGCGATCTGTC........................................... 15 1 4 0.75 3 3 0 0 0 0
..................................................................................................................................................................................................CGTGCGATCTGTCGG......................................... 15 1 10 0.70 7 5 0 0 2 0
..............................................................................................................................................................................................CGTGCGTGCGATTTGTCGG......................................... 19 2 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................................................................TCATTCGACGATGTGTCATA.. 20 3 4 0.25 1 0 0 0 1 0
...............................................................................................................................................................................................GTGCGTGCGATCTGTCG.......................................... 17 2 11 0.18 2 2 0 0 0 0
.........................................................................................................................................................................................................TTGGTGGGCGTCTTAAAA............................... 18 2 7 0.14 1 0 0 0 0 1
..............................ATCCTGGCTCAGATT............................................................................................................................................................................................................. 15 1 20 0.10 2 0 0 0 2 0
...................................................................................................................................................................CGAGTGACGCGAGATTCTT.................................................................... 19 3 12 0.08 1 0 0 0 1 0
..........................................................................................................TTGCTGCTGAAATTCGGGCC............................................................................................................................ 20 3 14 0.07 1 0 1 0 0 0
.............................................................................................................................................................................................................................AACCGCCTGAGTCGACT............ 17 2 15 0.07 1 0 0 0 0 1
..GAATTTGAGAAACTGAAGCC.................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
..........................................................................................................................GGCCACACCCGTTCCCA............................................................................................................... 17 2 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TGCTTCAACTCTTTTACTTCGCAAATAGCATAGGACCGGGTCTAAAGCTCCACTCAGGTTCAAATGTCGAGAGCATTTTCGTTTTCGCATTAGCGTAAGTGCCAGTAACGACGAGTTTAGCCCCGGTTTGTGCAAGGGTGACTTTTACGTTTGTTAGCGGCTTGCTCACCGCGCTTTAAGCATATTTGCTAAACGCACGCTAAACAGCCGCAGAATTTTATTTGGCGGACTAAGCTGCAACACAGTCTAT
**************************************************(((((......)))))....(((((..........(((....))).....((((.((((.((((((....(((((.......)))))...)))....)))..)))).)))).)))))..(((((.((.((((....)))).)).))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.....................AAAATAGCATAGGACAGGGT................................................................................................................................................................................................................. 20 2 1 6.00 6 6 0 0 0 0 0 0
......................AATTAGCATAGGACAGGGT................................................................................................................................................................................................................. 19 2 1 4.00 4 4 0 0 0 0 0 0
......................AAAAAGCATAGGACAGGGT................................................................................................................................................................................................................. 19 2 2 3.50 7 7 0 0 0 0 0 0
....................AAAAATAGCATAGGACAGGGT................................................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0
.......................AATAGCATAGGACAGGGTG................................................................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0
.....................AAAAAAGCATAGGACAGGGT................................................................................................................................................................................................................. 20 3 10 0.50 5 5 0 0 0 0 0 0
......................................................CAGGTTCTAAAGTGGAGAGC................................................................................................................................................................................ 20 3 5 0.40 2 0 0 0 1 1 0 0
..................................................................................................................................................................................................................GAGATTTTTTTTTGGCGGACT................... 21 3 3 0.33 1 0 1 0 0 0 0 0
.......................AAAAGCATAGGACAGGGT................................................................................................................................................................................................................. 18 2 8 0.25 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................................AAAATTTTATTTGGCGGAT.................... 19 2 6 0.17 1 0 1 0 0 0 0 0
...........................................................................................................................CGGTCGGTGCAAGGGTGA............................................................................................................. 18 2 6 0.17 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................TACACGCAAGCTGAACAGC.......................................... 19 3 20 0.15 3 3 0 0 0 0 0 0
......................................................................................................................AGCCCAGGATTGTGCA.................................................................................................................... 16 2 12 0.08 1 0 0 0 0 0 1 0
..........................................................................................................................GCGGTTTGTGCAGGGG................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................AAACGCAAGCTGAACAG........................................... 17 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:39 AM