ID:

dsi_26930

 Coordinate:

3l:11505412-11505561 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.5

Flybase annnotation

exon [3l_11505213_11505411_-]; CDS [3l_11505213_11505411_-]; intron [3l_11505412_11505754_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCAGTTATTCTGGGAATGTGGCTGACGTTTTCGATGTAGATCTATTGACGATAAACGTACTTAAAAATTCGCCCGTGCTCCAACTTTATTTAATTCAATTTGACATTGCCAAACAAGGTAGGAAATACTATTTACTATTAATATGTACTATTATGTAATGGTAAGTAATTTTCCGAAATTTAAATTAAATTACTATAGATAGTTGTGGAGGAACCTTCACAGGCCGCTTTGGCTACATCAAATCACCA
***********************************************************************************************************************...(((((...((((((((((((.((((......))))))))))))))))..))))).....********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
...................GTGGCTGACGTTTTCGATGTAGATCT............................................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................GTAGATCTATTGACGATAAACGTAC............................................................................................................................................................................................ 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................GTAGATCTATTGACGATAAAC................................................................................................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................GACGTTTTCGATGTAGATCTATTGAC....................................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................GATGTAGATCTATTGACGATAAAC................................................................................................................................................................................................ 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ATGGTAAGTAATTTTCCGAAAT..................................................................... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0
.........TTCTGGGAATGTGGCTGACGTTTT......................................................................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.....................GGCTGACGTTTTCGATGT................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................ATTCAATTTGACATTGCCCAACAAGA.................................................................................................................................. 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................TATTCAAAAATTCGCCCGT............................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................TTCGATTAAGATCTATTGACGATA................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................GTGGCTGACGTTTTCGATGTAGATCTATT.......................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TTTCGATGTAGATCTATTGACG...................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTAATTCAATTTGACATTGCCAAACAAGA.................................................................................................................................. 29 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................TGTAGATCTATTGACGATAAACGTACT........................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................TAATTCAATTTGACATTGCCAAACAAGA.................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................TTCGATGTAGATCTATTGACGATAAA................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................TTCGATGTAGATCTATTGACGATAAACG............................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................TTCGATGTAGATCTATTGACGATA................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.TGCAGTTATTCTGGGAATGTGGCTGA............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................GTAGGAAATACTATTTACTATT............................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................AGATCTATTGACGATAAACGTACT........................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......TTATTCTGGGAATGTGGCTGTT.............................................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................TTAATTCAATTTGACATTGCCCAACAAGA.................................................................................................................................. 29 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................GTAGATCTATTGACGATAAACGT.............................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............GAATGTGGCTGACGTTTTC........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................TGACGTTTTCGATGTAGATCTATTGAA....................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................GTAGATCTATTGACGATAAACGTA............................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................ATGTAGATCTATTGACGATAAAC................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................TTTCGATGTAGATCTATTGACGAT.................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................CGATGTAGATCTATTGAC....................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................GATGTAGATCTATTGACGAT.................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................GTTTTCGATGTAGATCTATTGACGAT.................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................TTCGATGTAGATCTATTGACGATAA.................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................TGTAGATCTATTGACGATAAACGTACA........................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................TTTTCGATGTAGCTCAATTGAA....................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................TTCGATGTAGATCTATTGACG...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TTTCGATGTAGATCTATT.......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................GGCTGACGTTTTCGATGTAGAT............................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TTTCGATGTAGATCTATTGAC....................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................GTACTTAAAAATTCGCCCGG............................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTTATGAAACACTATTTACT................................................................................................................ 22 3 3 0.67 2 0 0 0 0 0 2 0 0 0 0
...........CTGGGAATTTGGCTGTCGTT........................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.................................................................AAAATTCGTCCTTGCTCCAAAT................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................TCACAGCCCGCTTTGGTTAGAT.......... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.........................GACTTTATCGATGTAGAT............................................................................................................................................................................................................... 18 2 7 0.43 3 0 0 0 0 0 0 0 3 0 0
.......................GTGACTTTATCGATGTAGAT............................................................................................................................................................................................................... 20 3 9 0.22 2 0 0 0 0 0 0 0 2 0 0
......TTAGTCTGGGGATGTAGCT................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................GGTTCTATTATGTAATGG....................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................GGTACTATTGTGTAATGG....................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1
.........................GACTTTATCGATGTAGA................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................TAATGGTGAGTAATT.............................................................................. 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 1
..........TCTGGGAATGTGGCCT................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AACGTCAATAAGACCCTTACACCGACTGCAAAAGCTACATCTAGATAACTGCTATTTGCATGAATTTTTAAGCGGGCACGAGGTTGAAATAAATTAAGTTAAACTGTAACGGTTTGTTCCATCCTTTATGATAAATGATAATTATACATGATAATACATTACCATTCATTAAAAGGCTTTAAATTTAATTTAATGATATCTATCAACACCTCCTTGGAAGTGTCCGGCGAAACCGATGTAGTTTAGTGGT
*********************************************************************...(((((...((((((((((((.((((......))))))))))))))))..))))).....*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................TGTAACGGTTTGTTCCAT................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................TCGATACTTTGTGATAAATGAT............................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
................................................................................................................................................................ACCATTCATTACTAGGTTTTA..................................................................... 21 3 7 0.14 1 0 0 1 0 0
.......................................................................GCGAGCACGAGGTTG.................................................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0
.....................................................................................................................................................................TCTTTAAGAGGCTTTAAAT.................................................................. 19 2 13 0.08 1 0 0 0 1 0
.............................................................................ACGAGGTTGAAATAG.............................................................................................................................................................. 15 1 18 0.06 1 0 1 0 0 0
.................................................................................................................................................................................................................CGGCTTGGAAGTGTCC......................... 16 2 20 0.05 1 0 0 0 0 1
.....................................................................................................................................................................TCATTAAATGGCTTT...................................................................... 15 1 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:22 AM