ID:

dsi_26916

 Coordinate:

3l:7234070-7234192 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.7 -11.4 -11.1

Flybase annnotation

CDS [3l_7233836_7234360_-]; exon [3l_7233281_7234360_-]

No Repeatable elements found

Sense Strand Reads

###############################################################################################################################################################################################################################
ATGGGATTATTGAGCAGATCTTCAAGGCCAAGGACCAGTTGGCCATATCCGTGAAGCGCTGCTGGCTGGATGCCCCGCTGTCCGGCAGTTCATCGGCTCACATTTTTGGCGGCGAATCTGAACAGTGTTTGCGCAATGGCACAGCATCGGCCGCTTTCTTTAGTCCTCACCAGTCGCTGATCGGAGGATTGGGTGGTCAGGAGCGCCAAACGCATTTGCATAG
*************************************************************************************************************.((((...((((....(((((((......))).)))))))).))))............******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................................AGTCGCTGATCGGAGGATTGG............................... 21 0 1 8.00 8 6 2 0 0 0 0 0 0 0 0
.................................ACCAGTTGGCCATATCCGTGA......................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
..............CAGATCTTCAAGGCCAAGGAC............................................................................................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................CGGCGAATCTGAACAGTGTTTGC........................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................ATCTTCAAGGCCAAGGAC............................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........TGAGCAGATCTTCAAGGC................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GGCGAATCTGAACAATGTTTG............................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................ATCGGCCGCTTTCTTTAGTCCT........................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TGAAGCGCTGCTGGCTGGATG....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................TTGGCGGCGAATCTGAACAAT................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................TTTTTGGCGGCGAATCTGAACAGTGTT.............................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TTTAGTCCTCACCAGTCGCTGATCGGA...................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TTGGCGGCGAATCTGAACAG.................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................GTGAAGCGCTGCTGGCTGGATTT...................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................ACATTTTTGGCGGCGAATCT........................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................................................CTCACATTTTTGGCGGCGAAT.......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TGGCGGCGAATCTGAACAATGT............................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...........................................CATATCCGTGAAGCGCTGCTGGCTG........................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................GTGAAGCGCTGCTGGCTGGGT........................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................GCTGTCCGGCAGTTCATCGGCTCA........................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................GGCGGCGAATCTGAACAATGT............................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TGGCGGCGAATCTGAACAGTGTTTGC........................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................GAATCTGAACAGTGTTTGCGC......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACCAGTCGCTGATCGGAGGAT.................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACCAGTCGCTGATCGGAGGA................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................TTTTGGCGGCGAATCTGAAC.................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................ATATCCGTGAAGCGCTGCTGG.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................TTTTGGCGGCGAATCTGAACAGT................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........GAGCAGATCTTCAAGGCCA................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................AGGATTGGGTGGTCAGGGGAT.................. 21 3 4 0.50 2 0 0 0 0 0 0 2 0 0 0
..................................................................TGAATGCCCCGCGGTCCGGGA........................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................CGGAGGGTTGTGTGGTCAG....................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................GTGCAATGGCACAGTCTCGG......................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................GCGAGTCTGAACAGGGT............................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................CTCTTTAGTCGTCACCA................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................TCTGTCGGCTAATCTGAAC.................................................................................................... 19 3 17 0.12 2 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGACGTTGATCCGAGGATT................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................TCCTTTAGTCGTCACCA................................................... 17 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................AGCGAGTCTGAACAGT................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...................CTTCAACGCCAAGGA............................................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................TTGCGCAGTGGCAGAGCCT............................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....GATTATTGAGCTGAT............................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................TCTCTAGTCGTCACCA................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................CGATGATAGGAGGATT................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TACCCTAATAACTCGTCTAGAAGTTCCGGTTCCTGGTCAACCGGTATAGGCACTTCGCGACGACCGACCTACGGGGCGACAGGCCGTCAAGTAGCCGAGTGTAAAAACCGCCGCTTAGACTTGTCACAAACGCGTTACCGTGTCGTAGCCGGCGAAAGAAATCAGGAGTGGTCAGCGACTAGCCTCCTAACCCACCAGTCCTCGCGGTTTGCGTAAACGTATC
********************************************************.((((...((((....(((((((......))).)))))))).))))............************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
........................................................................................................................................................................TGGTCAGCGACTAGCCTCCTA.................................. 21 0 1 6.00 6 5 1 0 0 0 0 0 0 0
.......................................................................................CAAGTAGCCGAGTGTAAAAAC................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.................................................................................GGCCGTCAAGTAGCCGAGTGT......................................................................................................................... 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0
....................................................................................................................................................CCGGCGAAAGAAATCAGGAGT...................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCACCAGTCCTCGCGGTTTG............ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGGCGAAAGAAGTCAGGAGTG..................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................GAGTGGTCAGCGACTAGCCTC..................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................GAAATCAGGGGTGGTCAGCGA............................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.....AAATAACTCGTCTAGAAGTTCCGGTT................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.......ATAACTCGTCTAGAAGTTCCGG.................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................AAAGAAATCAGGAGTGGTCAG................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................GAAATCAGGAGTGGTCAGCGA............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................CAGGAGTGGTCAGCGACTAGC........................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................CCGTCAAGTAGCCGAGTGTGA....................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................GTCGGCGAAAGAAGTCAGGA........................................................ 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................TCAGGAGTGGTCAGCGACTAGC........................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GGCGAAAGAAATCAGGAGTGG.................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................TCCTGGTCAACCGGTATAGGC............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........ACTCGTCTAGAAGTTCCGGTT................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................GTCAGCGACTAGCCTCCTAAC................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........CTCGTCTAGAAGTTCCGGTTC............................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................CGGTATAGGCACTTCGCGGC.................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................AAATGAGGGGTGGTCAGTGA............................................. 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................GTGGTCAGCGACTAGG........................................ 16 1 7 0.14 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................ATCATGAGTGGTCAG................................................ 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0
...............................................................................CAGGGCGGGAAGTAGCCGA............................................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................TTACTGTGTCGAAGCCGCC...................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0
......................................................................................TCAAGTAGGCGAGTG.......................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................TGAGGGGTGGTCAGCGA............................................. 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................GGGGTCAGCGACTAG......................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 1
.............................TTCCTGCTCAACCGGGA................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 12:05 AM