ID:

dsi_26911

 Coordinate:

2r:4920711-4920767 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-1.2 -1.2 -1.2

Flybase annnotation

exon [2r_4920355_4920710_+]; CDS [2r_4920355_4920710_+]; CDS [2r_4920768_4921036_+]; exon [2r_4920768_4921036_+]; intron [2r_4920711_4920767_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
ATGCGAAAAGGAAGCCTGCTCCAACATGTCCTATCTCAGGGTCAATACGAGTAAGCGAATCCAAGACTAAGATATTGCTCTTTATTCATGCTTACTTTCGTTTACAGAGAGCATTCAAAGCATGAAGATGTTTTATGCGGACGCCCAGACCGGCTCA
***********************************************************....((((.(((.((..((...........)).)))))..))))..**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................TTCATGCTTACTTTCGTTTAC.................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TCATGCTTACTTTCGTTTACAG.................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................TCCAAGACTAAGATATTGCTC............................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................................GATGTTTTATGCGGACGCC............ 19 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................TGAAGATGTTTTATGCGGACGCCCAGA........ 27 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TGCGGACGCCCAGACCGGCC.. 20 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................CTTACTGTCGTTTAC.................................................... 15 1 4 0.25 1 1 0 0 0 0 0 0
.....................................................AGCGAGTCTAAGACTAAGGT.................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0
...................................................................TAAGATAGTGCTCTT........................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0
.............................................TACGAGGAAGCGAACC................................................................................................ 16 2 20 0.10 2 0 0 2 0 0 0 0
........................................GTCAATACTAGTATGAGA................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................................GGCGGACGCCCGGACC...... 16 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TACGCTTTTCCTTCGGACGAGGTTGTACAGGATAGAGTCCCAGTTATGCTCATTCGCTTAGGTTCTGATTCTATAACGAGAAATAAGTACGAATGAAAGCAAATGTCTCTCGTAAGTTTCGTACTTCTACAAAATACGCCTGCGGGTCTGGCCGAGT
****************************************************....((((.(((.((..((...........)).)))))..))))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..................................GAGTCGCAGTTATGGTCA......................................................................................................... 18 2 2 1.00 2 2 0 0 0 0
...........TTCGGACCAGGTTGTAAAGCA............................................................................................................................. 21 3 2 1.00 2 0 1 1 0 0
............TCGGACCAGGTTGTAAAGCA............................................................................................................................. 20 3 3 1.00 3 0 3 0 0 0
................................TGGAGTCGCAGTTATGGTCA......................................................................................................... 20 3 3 0.67 2 1 0 0 1 0
................................TGGAGTCCCAGTTATG............................................................................................................. 16 1 2 0.50 1 1 0 0 0 0
............TCGGACTAGGTTGTAAAG............................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0
..................................GAGTCGCAGTTATGGTCAGT....................................................................................................... 20 3 3 0.33 1 0 0 0 0 1
............TCGGACTAGGTTGTAAAGCA............................................................................................................................. 20 3 7 0.29 2 0 2 0 0 0
............................AGCTTAGAGTCACAGTTAT.............................................................................................................. 19 3 20 0.20 4 0 0 0 4 0
..................................GAGTCGCAGTTATGGTC.......................................................................................................... 17 2 6 0.17 1 1 0 0 0 0
...................................AGTCGCAGTTATGGTCA......................................................................................................... 17 2 14 0.14 2 2 0 0 0 0
.......................................................................................................................................ACGCCTGCGGGTCAG....... 15 1 10 0.10 1 0 0 0 1 0
................................TAGAGTCACAGTTAT.............................................................................................................. 15 1 10 0.10 1 0 0 0 1 0
.........................................................................................................................................TCCTGCTGGTCTGGCC.... 16 2 20 0.05 1 1 0 0 0 0

Generated: 04/23/2015 at 08:29 AM