ID:

dsi_26906

 Coordinate:

2l:12192668-12192832 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCAGCAACGCAGCAGCAAATCCAACAGCTACAACAGCAACCAAATGCAGAGTCCGAGACTGAAAGGTGAGTCACAAGCAAAATATGTCACTTATTGAGTATTGTATATCTCCTATTCAAATGTGTATAATATATAGTATAAGCGAAAAAGTCAGGGTTTTCTATTGCTAGGTTTTCGAAATTACTATAAGAAATCAAAAGTATTTAGTTCAATGGGTTAATGTATTTGCCGCGCTATCTTATCGACTTTTCCATTTTCCTCTTCA
**************************************************..(((.(((((((.(((((((.(((.........))).)))))))...((((((((((.............))))))))))(((((((....((((((......(((........)))...))))))....)))))))..............)))))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 O001
Testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................TGCTAGGTTTTCGCAGTTACTCT.............................................................................. 23 3 1 4.00 4 0 4 0 0 0 0 0 0 0 0
...........................................ATGCAGAGTCCGAGACTGAAAGTGC..................................................................................................................................................................................................... 25 3 1 3.00 3 2 0 0 0 1 0 0 0 0 0
............................................TGCAGAGTCCGAGACTGAAAGTGCA.................................................................................................................................................................................................... 25 3 1 3.00 3 0 0 3 0 0 0 0 0 0 0
..........................................................................................TTAGTGAGTATTGTATACC............................................................................................................................................................ 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................CAGAGTCCGAGACTGAAA......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................ACCAAATGCAGAGTCCGAGACTGA........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................CAGAGTCCGAGACTGAAAG........................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................TGCAGAGTCCGAGACTGAAAGC....................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...GCAACGCAGCAGCAAATCC................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................TAGTGAGTATTGTATACC............................................................................................................................................................ 18 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0
.................................................AGTCCGAGACTGAAAGGGC..................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..............................CAACGGCATCCAAACGCAGA....................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................TTTAGTGAGTATTGTATACC............................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGGATTTAGTTGAATGG.................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................TCAGGTACTTGCCGCGCTA............................. 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
................................................GAGTCCGTGACTGAA.......................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................GTTTTCGGAATTACT................................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0
......................................................................................TCACTTATTGACTGTTG.................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGTCGTTGCGTCGTCGTTTAGGTTGTCGATGTTGTCGTTGGTTTACGTCTCAGGCTCTGACTTTCCACTCAGTGTTCGTTTTATACAGTGAATAACTCATAACATATAGAGGATAAGTTTACACATATTATATATCATATTCGCTTTTTCAGTCCCAAAAGATAACGATCCAAAAGCTTTAATGATATTCTTTAGTTTTCATAAATCAAGTTACCCAATTACATAAACGGCGCGATAGAATAGCTGAAAAGGTAAAAGGAGAAGT
**************************************************..(((.(((((((.(((((((.(((.........))).)))))))...((((((((((.............))))))))))(((((((....((((((......(((........)))...))))))....)))))))..............)))))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
....................................................................................................AACATATAGAGGAAGAATTT................................................................................................................................................. 20 3 20 0.60 12 12 0 0 0 0 0
............................ATGTTGTAGTTGGTATACATC........................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0
....................GGTTTTCGATGTTATGGTTGGT............................................................................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0
...................AGTTTGTCGATGTTTTGGTTGGT............................................................................................................................................................................................................................... 23 3 4 0.25 1 0 1 0 0 0 0
..............................................................................................................................................................AGGATAACGATCCAA............................................................................................ 15 1 9 0.11 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................................AAAAGGTATCAGGAGAAG. 18 2 14 0.07 1 0 0 0 1 0 0
.........................................................................................................................................................................CCCAAAGCTCTAAGGATAT............................................................................. 19 3 17 0.06 1 0 0 0 0 1 0
.....................................................................................................ACACAGACAGGATAAGTTT................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:12192618-12192882 - dsi_26906 GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCAAA--------------------ATATGTCACTTAT---TGAGTATTGT--------------------------------A----------------------------------------------------TATC---TCCTA-TTCAAATGTGTATAATATATAGTATAAGCGAAAAA--------------------------------GTCAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTATTG---------------------------------------------------CTAGGTTTTCGAAAT----------------------------------TACTA-TAAGAAATCAAAAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-CCGCGCTATCTTATCGACTTTT-CCATTTTCCTCTTCA
droSec2 scaffold_16:726439-726692 - GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATGTCACTTAT---AGAGTATTG----------------------------------------------------------------------------------------TC---TCCTA-TTGAAATGTGTATAATATAT-----ATGTGAAATA--------------------------------GTCAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTACTG---------------------------------------------------C--TGTTTTCGAAAT----------------------------------TACTA-TAAGAAATCAAAAGTATTAAGTTCA-----ATGGGTTAATGTATTTG-CCGCGCTATCTTATCGACTTTT-CCATTTTCCTCTTCA
dm3 chr2L:12536063-12536339 - GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATGTCACTTAT---TGAGTAT-------------------------------------------------------------------------------------------------------TAAATGTGTATAATAAAT-----AAGTAAAATA--------------------------------GTCAGGATTTGAAA-----------T-------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATTTTCGACATATTTACAAGATACATACATAACAAGATATATTGTTACTT-TGAGAAATCAAAAGTATTTAGTTCA-----ATGGGTTAATGCATTTG-CC-CGCTATCTTATCGACTTTT-CCATTTTCCTCTTCA
droEre2 scaffold_4929:12882249-12882549 + GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATGTCACTTGA---TGCATA------------GCGAAAGCAAGACATTCAAATGAAC----------------------------------------------------TATC---TGGTT-TTGCAATGTGTGGAATATAT-----TAGTAAACTA--------------------------------ATTAGGGGTTACAT-----------A-------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTTTCGACCT-TTTGAAAGATACCC----------ATATCTTGTTACTT-TGGGAAATCAACAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-CC-CGCTATCTTATCGACTTTT-CCATTTTCCTCTTCA
droYak3 2L:8975464-8975759 - GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATCTCACTTAC---TT--------GAATA---GCTGAACAAAGACATTGTAGTTATC----------------------------------------------------TATT---TCGTTTTTTGAATGTGTAGAATATTT-----TAGTAAAATA--------------------------------ATCAGGGATTGAATT---------CA-------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTTTCGACAT-TTTAAAAGAAACAA----------TTAT-----------TGGGAAATTAAAAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-CGCCGCTATCTTATCGACTTTT-CCATTTTCCTCTTCA
droEug1 scf7180000409122:927522-927832 - GCTACAAC----------------GCAGCAGCAAATTCAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCAAGAGCTGA--------------------ATATATATTTTAT---TTTATT------------GA-----------------------ATGATCTTAGATACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAGAGAGAAAATGTAAGGAAATGAA-CGAACAGAT------TTAG---------------------------------AAATGTTTTATGTTTTAACTTCCATTCTCTTACTCTAGAAACCAATCCCCTAAAAAATTCTTCCAAT--TTTCTTTA---------------------------------------------GTCGAATCAAAAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-GC-TACTATCTTATCGGCTTTT-CCATTTTCCTCTTCA
droBia1 scf7180000302428:6851900-6852125 - CCAGCAAC----------------A-----GCACCACCAACAGCAGCAGCA---ACA--CATGTCCA--GCATGGACGCCATG---GGCGGCTACAGTCAGGTGAGG------------------------ATCATTGTT---TGAATAATAT--------------------------------C----------------------------------------------------AATT---TGACT-TTTAAAAATAAATTTAAAAT-------AAAAAATG--------------------------------ATAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTTTATATTA-----------------------------------------------------------------------AAAACTACAC----------TTTT-----------TTAATTACATAAAGTTTTTTATATA-----TTAAATTAAAATTCTTA-CCCCACCTCTTTATC-----------------------
droTak1 scf7180000415400:506543-506751 + GCAACAAATATACATGCAACATATGCAGCAGCAGCAGCAGCAGCAACATCA---G----CATATGCA-------AAACATGCGACATAA------------------------------------------------------CTAGACTTAC--------------------------------G----------------------------------------------------CAGA---CTGCA-ATCAGACATATGTAAAACATAAGCTTAATTTAAAA--------------------------------GTAGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTGTA---------------------------------------------------CCGGTTTTTTGCATT----------------------------------AATTGTCGAGTAATCACGTAA-----GTTCCATGTAATGTGTAA--------A-C-------------------------------CGTTCT
droEle1 scf7180000491008:21326-21525 - GCAGCAGC---------A------ACATCACCAGCTCAAGCGGCCACCACC---ACCACAACACATG-------A-ATTAGCCAA-CAAAGGTGAGTGGTAAAACAC--------------------ATATAAATCCATT---AAAGTACGG-GA-----------------------------------------------------------------------------------------------------------ACAATA------------------T-----------CTAAGACCCTGTTAGA--TAAGCGGAAACCATATT---------AGTCAAGGTTG--------------------------------------------------------TCAACATGCTCAAAAA-----------------T--------------------------------------------------------------------------------ATA---------------------------------------------------CAAGGTTTTTGAAAT----------------------------------ATGTA-TAGG---------------------------------------------------------------------------------A
droRho1 scf7180000780043:424001-424342 - GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCACTAGAAAA--------------------ACATACAACATAT---TAAAAA------------GC-----------------------TTTACCATATGAACAT-------------------AATTTATTAGGGGATAT------------------------------------------------AAAATTTAGATCATGGGTAACTTATATACATT-----------TATAAGAACGTTT----AATTTTTTTTTATATTAAGATCAGTTTCTTAATCAATTTAAAAAAAGTTCAATGCCATTATGA-----------------------------AACATTTTAACGAAATTTAT-CACATAGA-AT----TAAAAATTTAATTTCTGCGTCT-----------------------------------------------------------------------------------------TCAGAAT----------------------------------AAC---------------------------------------------------CAATTCAAACCAACTGACTTGC-ATGTTTATCTTACAA
droFic1 scf7180000454015:438154-438310 - GCAGCAAC----------------GCAGCAGCAAATTCAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCATTCGCAAA--------------------CCATATCTTTTG-AAT----------GTAGGGTTT----------------------------------------------------------------------------TATC---TTAAT-AGGTTAAGGGTATAAATTAA-----AAAAGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAGGG-----------------------------------------------------------------TTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droKik1 scf7180000302472:916219-916584 - ACAACATC----------------AGCAATGCAGCTACAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCACATGGCAA--------------------ATATAATCTTTAT---TGAATA------------GT-----------------------TTTATTCAAAAAAAATTTCTTGGAATTGGTAAAACCATTTCATTGGGGATTT------------------------------------------------T-----------CTAAGAAACTGATAAGAATA-----------AATACAAACAATTGGTAAAATTTTTGCAATATAA-AAGCA------TTCTGAAATTGAAAAACG---------------T-----------------------------AAAAACTGAAAGGAAATTAT-CAAAAAAATAA----TTATAATTGAATTTCA----------------------------------------------------------------------------------TCCAAA--TGTTTTCGTTT------AAACCTAAAA----------CC---------------------------------TTTCA-----ATGGA-AAATGGAC--GACG-CTCTATCTTATCAGTTTTTCCCATTTTCCGTTTCA
droAna3 scaffold_13340:22423195-22423311 - GCATCCGC-----------CG---GAAATAGCAGCTTCAGCAGCAACAGTA---ACAACATA-AGCATTTCACTGATTTGATG---------AACATGCAAAGCGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA----TATTTATTGAATTTCTACGTTTTCT-----ATTCGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droBip1 scf7180000396580:663995-664070 - GCGTCTAC----------------ACAGCAACAGATCCAGCAGCTACAGCA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTGACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:6436975-6437116 + GCAGCAAC---------G------GCAGCAGCAACAGCAACGACAGCGGCG---GCAACAACTTGG------------CCG------CAACATG-GCCACTAGCAAC--------------------TTCTCTTAATTA-AGT----------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGACCTGCTGTTGCATGCAAATGTTGCATGGAAA-ATAAAAAAATGAAGCGAA---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droPer2 scaffold_1:4735316-4735388 - GCAGCCAC----------------ACAGCAGCAGATCCAACAGCTACAGCA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004521:10324602-10324687 - GCAAGCAC----------------ATCGCAGCAAATGCAACAATTACAACAACAGCAGCCAAATGCA-------GAATCCGAGACTGAAAGGTAAGTCCAAATCAAA--------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13246:1792299-1792427 - ACAACAAC----------------ACAGCAACAAATACAACAGCTACAGCA---GCAACCAAATGCA-------GAATCGGAGACTGAAAGGTGAGTCCAAATAACA--------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATATATATATTCGATATTAAAGTATTTTTTAAAGATGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droMoj3 scaffold_6496:10511585-10511834 - GCAGGCGC----------------AGAGCAACACTAACAATGCCTA--ATA---TCTGC--------------------CGATCCGGGAAGCTTTGTTACACACCCAACGCGAAGGGATTCTGTGTGAAATGGCACTGAC---TGAGTATCAT--------------------------------C----------------------------------------------------TTTAAAATCTTA-TTTATATACGTATGTTTTAT-------ACGAAATC--------------------------------ATCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCATCATGTATTG-----------------------------------------------------------------------GAATAGATATCC--------AT-------AAATGTTATGTAAACATGTAT-----TT-------------TTGATGTATTTT-AGCTTCTTT--------TTTTT-TCATTTTATCCTTCA
droGri2 scaffold_15252:15469529-15469616 + ACAACCAC----------------ACAGCAACAGATACAACAGCTACAGCA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTAAGTCCAAGATA--------------------------ATCACTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCAAA--------------------ATATGTCACTTAT---TGAGTATTGT--------------------------------A----------------------------------------------------TATC---TCCTA-TTCAAATGTGTATAATATATAGTATAAGCGAAAAA--------------------------------GTCAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTATTG---------------------------------------------------CTAGGTTTTCGAAAT----------------------------------TACTA-TAAGAAATCAAAAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-CCGCGCTATCTTATCGACTTTT-CCATTTTCCTCTTCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................ATGCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00302100000000000000
.................................................................CA-------GAGTCCGAGACTGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.........................................................ACCAAATGCA-------GAGTCCGAGACTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.................................................................CA-------GAGTCCGAGACTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...............................................................TGCA-------GAGTCCGAGACTGAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...GCAAC----------------GCAGCAGCAAATCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...........................................................................AGTCCGAGACTGAAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000000100000
droSec2
GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATGTCACTTAT---AGAGTATTG----------------------------------------------------------------------------------------TC---TCCTA-TTGAAATGTGTATAATATAT-----ATGTGAAATA--------------------------------GTCAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTACTG---------------------------------------------------C--TGTTTTCGAAAT----------------------------------TACTA-TAAGAAATCAAAAGTATTAAGTTCA-----ATGGGTTAATGTATTTG-CCGCGCTATCTTATCGACTTTT-CCATTTTCCTCTTCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................ATGCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
........................................................AACCAAATGCA-------GAGTCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
dm3
GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATGTCACTTAT---TGAGTAT-------------------------------------------------------------------------------------------------------TAAATGTGTATAATAAAT-----AAGTAAAATA--------------------------------GTCAGGATTTGAAA-----------T-------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATTTTCGACATATTTACAAGATACATACATAACAAGATATATTGTTACTT-TGAGAAATCAAAAGTATTTAGTTCA-----ATGGGTTAATGCATTTG-CC-CGCTATCTTATCGACTTTT-CCATTTTCCTCTTCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................TGCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ACCAAATGCA-------GAGTCCGAGACTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGCAGCAAATCCAACAGCTACAACA---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CAACCAAATGCA-------GAGTCCGAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-CC-CGCTATCTTATCGTT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..................................................A---GCAACCAAATGCA-------GAGTCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................ACA---GCAACCAAATGCA-------GAGTCCGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................AAATGCA-------GAGTCCGAGACTGAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AACCAAATGCA-------GAGTCCGAGACTGAAAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCAACCAAATGCA-------GAGTCCGAGACTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CA-------GAGTCCGAGACTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TACAACA---GCAACCAAATGCA-------GAGTCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GATTTGAAA-----------T-------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATTC.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................TACAACA---GCAACCAAATGCA-------GAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................ACCAAATGCA-------GAGTCCGAGACTGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AAAT-----AAGTAAAATA--------------------------------GTCAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AATCCAACAGCTACAACA---GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CA-------GAGTCCGAGACTGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ACAACA---GCAACCAAATGCA-------GAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................A---GCAACCAAATGCA-------GAGTCCGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGCAAC----------------GCAGCAGCAAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................ATGCA-------GAGTCCGAGACTGAAAGGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATCGACTTTT-CCATTTTCCT.....2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................ATGCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTATTTAGTTCA-----A.......................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................A-------GAGTCCGAGACTGAAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AACCAAATGCA-------GAGTCCGAGACTGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ACA---GCAACCAAATGCA-------GTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................A-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATGTCACTTGA---TGCATA------------GCGAAAGCAAGACATTCAAATGAAC----------------------------------------------------TATC---TGGTT-TTGCAATGTGTGGAATATAT-----TAGTAAACTA--------------------------------ATTAGGGGTTACAT-----------A-------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTTTCGACCT-TTTGAAAGATACCC----------ATATCTTGTTACTT-TGGGAAATCAACAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-CC-CGCTATCTTATCGACTTTT-CCATTTTCCTCTTCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................GCA-------GAGTCCGAGACTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................ATGCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCGACCT-TTTGAAAGATACCC----------.....................................................................................................2511.0010100000
droYak3
GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAGTCCGAGACTGAAAGGTGAGTCACAAGCGAA--------------------ATATCTCACTTAC---TT--------GAATA---GCTGAACAAAGACATTGTAGTTATC----------------------------------------------------TATT---TCGTTTTTTGAATGTGTAGAATATTT-----TAGTAAAATA--------------------------------ATCAGGGATTGAATT---------CA-------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTTTCGACAT-TTTAAAAGAAACAA----------TTAT-----------TGGGAAATTAAAAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-CGCCGCTATCTTATCGACTTTT-CCATTTTCCTCTTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................ATGCA-------GAGTCCGAGACTGAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300100020000
....................................................................................CTGAAAGGTGAGTCACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................A-------GAGTCCGAGACTGAAAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................AACCAAATGCA-------GAGTCCGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................TGCA-------GAGTCCGAGACTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
..........................................................................GAGTCCGAGACTGAAAGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
droEug1
GCTACAAC----------------GCAGCAGCAAATTCAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCAAGAGCTGA--------------------ATATATATTTTAT---TTTATT------------GA-----------------------ATGATCTTAGATACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAGAGAGAAAATGTAAGGAAATGAA-CGAACAGAT------TTAG---------------------------------AAATGTTTTATGTTTTAACTTCCATTCTCTTACTCTAGAAACCAATCCCCTAAAAAATTCTTCCAAT--TTTCTTTA---------------------------------------------GTCGAATCAAAAGTATTTAGTTCA-----ATGGGTTAATGTATTTG-GC-TACTATCTTATCGGCTTTT-CCATTTTCCTCTTCASizeHit CountTotal NormTotal
No Reads
droBia1
CCAGCAAC----------------A-----GCACCACCAACAGCAGCAGCA---ACA--CATGTCCA--GCATGGACGCCATG---GGCGGCTACAGTCAGGTGAGG------------------------ATCATTGTT---TGAATAATAT--------------------------------C----------------------------------------------------AATT---TGACT-TTTAAAAATAAATTTAAAAT-------AAAAAATG--------------------------------ATAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTTTATATTA-----------------------------------------------------------------------AAAACTACAC----------TTTT-----------TTAATTACATAAAGTTTTTTATATA-----TTAAATTAAAATTCTTA-CCCCACCTCTTTATC-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCAACAAATATACATGCAACATATGCAGCAGCAGCAGCAGCAGCAACATCA---G----CATATGCA-------AAACATGCGACATAA------------------------------------------------------CTAGACTTAC--------------------------------G----------------------------------------------------CAGA---CTGCA-ATCAGACATATGTAAAACATAAGCTTAATTTAAAA--------------------------------GTAGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTGTA---------------------------------------------------CCGGTTTTTTGCATT----------------------------------AATTGTCGAGTAATCACGTAA-----GTTCCATGTAATGTGTAA--------A-C-------------------------------CGTTCTSizeHit CountTotal NormTotal
No Reads
droEle1
GCAGCAGC---------A------ACATCACCAGCTCAAGCGGCCACCACC---ACCACAACACATG-------A-ATTAGCCAA-CAAAGGTGAGTGGTAAAACAC--------------------ATATAAATCCATT---AAAGTACGG-GA-----------------------------------------------------------------------------------------------------------ACAATA------------------T-----------CTAAGACCCTGTTAGA--TAAGCGGAAACCATATT---------AGTCAAGGTTG--------------------------------------------------------TCAACATGCTCAAAAA-----------------T--------------------------------------------------------------------------------ATA---------------------------------------------------CAAGGTTTTTGAAAT----------------------------------ATGTA-TAGG---------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
GCAGCAAC----------------GCAGCAGCAAATCCAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCACTAGAAAA--------------------ACATACAACATAT---TAAAAA------------GC-----------------------TTTACCATATGAACAT-------------------AATTTATTAGGGGATAT------------------------------------------------AAAATTTAGATCATGGGTAACTTATATACATT-----------TATAAGAACGTTT----AATTTTTTTTTATATTAAGATCAGTTTCTTAATCAATTTAAAAAAAGTTCAATGCCATTATGA-----------------------------AACATTTTAACGAAATTTAT-CACATAGA-AT----TAAAAATTTAATTTCTGCGTCT-----------------------------------------------------------------------------------------TCAGAAT----------------------------------AAC---------------------------------------------------CAATTCAAACCAACTGACTTGC-ATGTTTATCTTACAASizeHit CountTotal NormTotal
No Reads
droFic1
GCAGCAAC----------------GCAGCAGCAAATTCAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCATTCGCAAA--------------------CCATATCTTTTG-AAT----------GTAGGGTTT----------------------------------------------------------------------------TATC---TTAAT-AGGTTAAGGGTATAAATTAA-----AAAAGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAGGG-----------------------------------------------------------------TTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droKik1
ACAACATC----------------AGCAATGCAGCTACAACAGCTACAACA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCACATGGCAA--------------------ATATAATCTTTAT---TGAATA------------GT-----------------------TTTATTCAAAAAAAATTTCTTGGAATTGGTAAAACCATTTCATTGGGGATTT------------------------------------------------T-----------CTAAGAAACTGATAAGAATA-----------AATACAAACAATTGGTAAAATTTTTGCAATATAA-AAGCA------TTCTGAAATTGAAAAACG---------------T-----------------------------AAAAACTGAAAGGAAATTAT-CAAAAAAATAA----TTATAATTGAATTTCA----------------------------------------------------------------------------------TCCAAA--TGTTTTCGTTT------AAACCTAAAA----------CC---------------------------------TTTCA-----ATGGA-AAATGGAC--GACG-CTCTATCTTATCAGTTTTTCCCATTTTCCGTTTCASizeHit CountTotal NormTotal
No Reads
droAna3
GCATCCGC-----------CG---GAAATAGCAGCTTCAGCAGCAACAGTA---ACAACATA-AGCATTTCACTGATTTGATG---------AACATGCAAAGCGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA----TATTTATTGAATTTCTACGTTTTCT-----ATTCGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................ATTTGATG---------AACATGCAAAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
GCATCCGC-----------CG---GAAATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
GCATCCGC-----------CG---GAAATAGCAGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................ATA-AGCATTTCACTGATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................................................................TTGATG---------AACATGCAAAGCGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................2111.001000001
......GC-----------CG---GAAATAGCAGCTTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
GCGTCTAC----------------ACAGCAACAGATCCAGCAGCTACAGCA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTGACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GCAGCAAC---------G------GCAGCAGCAACAGCAACGACAGCGGCG---GCAACAACTTGG------------CCG------CAACATG-GCCACTAGCAAC--------------------TTCTCTTAATTA-AGT----------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGACCTGCTGTTGCATGCAAATGTTGCATGGAAA-ATAAAAAAATGAAGCGAA---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GCAGCCAC----------------ACAGCAGCAGATCCAACAGCTACAGCA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTGAGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................ATGCA-------GAATCCGAGACTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................ATCCGAGACTGAAAGGTGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................ATGCA-------GAATCCGAGACTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
GCAAGCAC----------------ATCGCAGCAAATGCAACAATTACAACAACAGCAGCCAAATGCA-------GAATCCGAGACTGAAAGGTAAGTCCAAATCAAA--------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................TGCA-------GAATCCGAGACTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00210001
....................................GCAACAATTACAACAACAGCAGCCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
.............................................................AATGCA-------GAATCCGAGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
..................................................AACAGCAGCCAAATGCA-------GAATCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
................................................................GCA-------GAATCCGAGACTGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.............................................................AATGCA-------GAATCCGAGACTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
...............................................................TGCA-------GAATCCGAGACTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
droVir3
ACAACAAC----------------ACAGCAACAAATACAACAGCTACAGCA---GCAACCAAATGCA-------GAATCGGAGACTGAAAGGTGAGTCCAAATAACA--------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATATATATATTCGATATTAAAGTATTTTTTAAAGATGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................GTGAGTCCAAATAACA--------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATA....................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
..................................................A---GCAACCAAATGCA-------GAATCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.........................................AGCTACAGCA---GCAACCAAATGCA-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................TACAACAGCTACAGCA---GCAACCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
................................AAATACAACAGCTACAGCA---GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................AACCAAATGCA-------GAATCGGAGACTGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
........................................................AACCAAATGCA-------GAATCGGAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
..................................................................A-------GAATCGGAGACTGAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000010000
.......................................ACAGCTACAGCA---GCAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCAGGCGC----------------AGAGCAACACTAACAATGCCTA--ATA---TCTGC--------------------CGATCCGGGAAGCTTTGTTACACACCCAACGCGAAGGGATTCTGTGTGAAATGGCACTGAC---TGAGTATCAT--------------------------------C----------------------------------------------------TTTAAAATCTTA-TTTATATACGTATGTTTTAT-------ACGAAATC--------------------------------ATCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCATCATGTATTG-----------------------------------------------------------------------GAATAGATATCC--------AT-------AAATGTTATGTAAACATGTAT-----TT-------------TTGATGTATTTT-AGCTTCTTT--------TTTTT-TCATTTTATCCTTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................GATCCGGGAAGCTTTGTTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................GTTACACACCCAACGCGAAGGGATTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTAAACATGTAT-----TT-------------TTG................................................2211.001100000
...........................................................................................................................................................................................................................................................................................ATC--------------------------------ATCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCATCATGTATTG-----------------------------------------------------------------------GA.......................................................................................................................2711.001100000
.............................................A--ATA---TCTGC--------------------CGATCCGGGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................AACACTAACAATGCCTA--ATA---TCTGC--------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................ATGTTTTAT-------ACGAAATC--------------------------------ATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................CGAAGGGATTCTGTGTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
ACAACCAC----------------ACAGCAACAGATACAACAGCTACAGCA---GCAACCAAATGCA-------GAATCCGAGACTGAAAGGTAAGTCCAAGATA--------------------------ATCACTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:37 PM