ID:dsi_269 |
Coordinate:x:18342134-18342207 + |
Confidence:Known Ortholog |
Type:intergenic |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in alignment | mismatch in read |
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intergenic
No Repeatable elements found
| mature | star |
|
CCATTATATTATACATTCTATATGCTATACAAAGGATACTATATACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATACATTTTCATACATGTAAAACATATTTAGAACTCAAGTACCGAAAAATGAACATCGAAACGGGAGACCACGAACATCATGCTACCCAT
**********************************************...((((.(((.((((.((((((((.((..((((((..............))))))..)).)))))))).)))).))).)))).......************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
M024 male body |
O001 Testis |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M023 head |
SRR618934 dsim w501 ovaries |
O002 Head |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
M025 embryo |
SRR1275483 Male prepupae |
GSM343915 embryo |
M053 female body |
SRR1275485 Male prepupae |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................TGTAAAACATATTTAGAACTCA..................................................... | 22 | 0 | 1 | 1945.00 | 1945 | 1443 | 467 | 0 | 8 | 7 | 4 | 8 | 0 | 3 | 2 | 3 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAA......................................................... | 18 | 0 | 2 | 466.00 | 932 | 8 | 0 | 912 | 0 | 0 | 0 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTC...................................................... | 21 | 0 | 1 | 352.00 | 352 | 259 | 90 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTT........................................................................................... | 22 | 0 | 4 | 79.75 | 319 | 271 | 11 | 0 | 13 | 12 | 0 | 0 | 0 | 3 | 7 | 0 | 0 | 1 | 1 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGAACTCA..................................................... | 23 | 0 | 1 | 36.00 | 36 | 29 | 5 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGAACTC...................................................... | 22 | 0 | 1 | 20.00 | 20 | 18 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACT....................................................... | 20 | 0 | 1 | 14.00 | 14 | 3 | 10 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAAC........................................................ | 19 | 0 | 1 | 12.00 | 12 | 10 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCAT.................................................... | 23 | 1 | 1 | 11.00 | 11 | 11 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGAA......................................................... | 19 | 0 | 2 | 11.00 | 22 | 5 | 0 | 17 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCT..................................................... | 22 | 1 | 1 | 10.00 | 10 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCAA.................................................... | 23 | 0 | 1 | 8.00 | 8 | 6 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCG..................................................... | 22 | 1 | 1 | 8.00 | 8 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................CATGTAAAACATATTTAGAACT....................................................... | 22 | 0 | 1 | 8.00 | 8 | 6 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAATTCA..................................................... | 22 | 1 | 1 | 4.00 | 4 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGT............................................................................................ | 21 | 0 | 4 | 4.00 | 16 | 15 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATGTTTAGAACTCA..................................................... | 22 | 1 | 1 | 3.00 | 3 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATG............................................................................................. | 20 | 0 | 4 | 2.75 | 11 | 11 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................AGTACTAAATATATTGCACATG............................................................................................. | 22 | 0 | 2 | 2.50 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTT.......................................................................................... | 23 | 1 | 4 | 2.50 | 10 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTA.......................................................................................... | 23 | 1 | 4 | 2.25 | 9 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACC....................................................... | 20 | 1 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGAGCTCAA.................................................... | 24 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTACAACTCA..................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................TACTTGTCGGCACTGGAG................................................................................................................. | 18 | 0 | 2 | 2.00 | 4 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................GTACTAAATATATTGCACATGT............................................................................................ | 22 | 0 | 4 | 2.00 | 8 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAAGTCA..................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTGAAACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTGGAACTCA..................................................... | 22 | 1 | 1 | 2.00 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................GTACTAAATATATTGCACATG............................................................................................. | 21 | 0 | 4 | 1.50 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................TAAAACATATTTAGAACTCA..................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTGAAACATATTTAGAACTC...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................GGTAAAACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACCCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAGCT....................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAGCTC...................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCAAA................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTTAAACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGGACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTA............................................................ | 16 | 0 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAAATCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAG........................................................... | 16 | 0 | 2 | 1.00 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCCT.................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGAACTCT..................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAAGTC...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATTTTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAAAATATTTAGAACTC...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TATAAAACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TCTAAAACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCC..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTCA......................................................................................... | 24 | 0 | 4 | 1.00 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTTA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTT...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAATACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAGCTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTC.......................................................................................... | 23 | 0 | 4 | 1.00 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATGTTTAGAACTC...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCAAAAA................................................. | 26 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAGACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTCATT................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAATTCAC.................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTGA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACG....................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TTTAAAACATATTTAGAACTCA..................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAACTA...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGAACT....................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TATAAAACATATTTAGAACT....................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAACCATATTTAGAACTC...................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TTGAAAACATATTTAGAACTCA..................................................... | 22 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................GTAAAACATATTTAGAACTCAT.................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTAA......................................................................................... | 24 | 1 | 4 | 0.75 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTA........................................................................................... | 22 | 1 | 4 | 0.75 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGAGCC....................................................... | 20 | 2 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................ATACTTGTCGGCACTGGAG................................................................................................................. | 19 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTCAT........................................................................................ | 25 | 0 | 4 | 0.50 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................AATACTAAATATATTGCACATGTT........................................................................................... | 24 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................ATGTAAAACATATTTAGA.......................................................... | 18 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................ATATACTTGTCGGCACTGGAG................................................................................................................. | 21 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATGTTGCACATGTT........................................................................................... | 22 | 1 | 4 | 0.50 | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................ATACTAAATATATTGCACATGTT........................................................................................... | 23 | 1 | 4 | 0.50 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................TATACTTGTCGGCACTGGAG................................................................................................................. | 20 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................TCTGTAAAACATATTTAGAAC........................................................ | 21 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGCAG.......................................................................................... | 23 | 3 | 4 | 0.50 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACAA.............................................................................................. | 19 | 1 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................ACATATTTAGAACTCATGTAAA............................................... | 22 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATTT............................................................................................ | 21 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTGGAATCCA..................................................... | 22 | 3 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACAAGTT........................................................................................... | 22 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGAACATGTT........................................................................................... | 22 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATTTT........................................................................................... | 22 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................CTAAATATATTGCACATGTT........................................................................................... | 20 | 0 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTTA......................................................................................... | 24 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAATCATATTTAGAACTCA..................................................... | 22 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGTAAAACATATTTAGCACT....................................................... | 20 | 1 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTAAAA....................................................................................... | 26 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTCATA....................................................................................... | 26 | 0 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGTTTT......................................................................................... | 24 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACAAAATATATTGCACATGTT........................................................................................... | 22 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTAAATATATTGCACATGG............................................................................................ | 21 | 1 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TACTCAATATATTGCACATGTT........................................................................................... | 22 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TATCTAAATATATTGCACATGTT........................................................................................... | 23 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TGCTAAATATATTGCACATGTT........................................................................................... | 22 | 1 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................GGTCAAACATATTTAGAA......................................................... | 18 | 2 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....................................................................ATATTGCACATGTTACTAAAT.................................................................................... | 21 | 3 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................CCACGACCATCATCCGACC... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
|
GGTAATATAATATGTAAGATATACGATATGTTTCCTATGATATATGAACAGCCGTGACCTCATGATTTATATAACGTGTACAAGTATGTAAAAGTATGTACATTTTGTATAAATCTTGAGTTCATGGCTTTTTACTTGTAGCTTTGCCCTCTGGTGCTTGTAGTACGATGGGTA
**************************************...((((.(((.((((.((((((((.((..((((((..............))))))..)).)))))))).)))).))).)))).......********************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
M023 head |
M024 male body |
SRR553485 Chicharo_3 day-old ovaries |
SRR902009 testis |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................CTCATGATTTATATAACGTGTA.............................................................................................. | 22 | 0 | 2 | 3.50 | 7 | 5 | 2 | 0 | 0 | 0 | 0 |
| ..........................................................CTCATGATTTATATAACGTGT............................................................................................... | 21 | 0 | 2 | 2.50 | 5 | 4 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CGTACATTTTGTATAAATCTTG........................................................ | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................GTACATTTTGTATAAATCTTG........................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................TGTACATTTTGTATAAATCTTG........................................................ | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................TCATGATTTATATAACGTGTA.............................................................................................. | 21 | 0 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...........................................................................................................................ATGGCTCTTTACTTG.................................... | 15 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................AAAAAGTGTACAAGGATGTA.................................................................................... | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................TTAGTATACATCTTGAG...................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| Species | Coordinate | ID | Alignment |
|---|---|---|---|
| droSim2 | x:18342084-18342257 + | dsi_269 | CCATTATATTATACATTCTATATG-----CTATACAAAGGATA-------------------------------------------------------------------------CTATATACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATACATTTTCATACATGTAAAACATATTTAGAACTCAAGTACCGAAAAATGAACATCGAAACGGGAGA--CCACGAACATCATGCTACCCAT |
| droSec2 | scaffold_8:1734789-1734967 + | dse_236 | CCATTATATTGTACATTATATATGTATTGTTATGCGAAGGATA-------------------------------------------------------------------------CTATATACTTGTCGACACTGGCGTACTAAATATATTGCACATGTTCATACATTTTCATACATGTAAAACATATTTAGAACTCAAGTACCGAAAAATGAACATCGAAACGGGAGA--ACACGAACATCATGCTACCCAT |
| dm3 | chrX:19452299-19452539 + | dme-mir-4966-1 | CCATTATATTATACATTCTATATGTA---TTATACGAATGATATTTTTGAATGATTTCAGAATATCTAGAATCTTGGTATTCGTGCAAAAAGTTTCCAGGACATTGAGCTGTGTGACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTC----------AACATATTTAGCACTCAAGTACCGAAAAATGAACAACGAAACGAAAAATAACACGAACATCATGCTGCCCAT |
| Species | Read alignment | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| droSim2 |
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| droSec2 |
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| dm3 |
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Generated: 05/15/2015 at 03:35 PM