ID:

dsi_26882

 Coordinate:

3r:9455387-9455647 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3r_9455648_9456667_+]; CDS [3r_9455648_9456667_+]; exon [3r_9455176_9455386_+]; CDS [3r_9455176_9455386_+]; intron [3r_9455387_9455647_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCCGCTGGCGGCTCTGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCGAAAACCATTAGAGATTGGTAAAGGGGGTTTATGGATGTTGGTTAAGGGAAAAGTCGCTAAATCGGGCGAGTTTTACTCAATTGTTGGTTCTGCATTTGTTTGTTTTGTTGAACTCTTGTGTTGCCTTCATTCAAAATTCGCAATGTGTTCACCATTTGGCACTGTATTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAATCTACCAAACTTACATCAACACCACAACCACCAAATAACAAACAACAACCACAGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGACCAACACGAAC
*********************************************************************************************************************************.....((((....(((((.(((...........))).))))).....)))).************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
.................................................................................................................................TTACTCAATTGTTGGTTCTGCATTTGTT............................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTGTTGAACTCTTGTGTTGC.................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................AGGACCTAAGCAAAAAAGACAA...................................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................AAATGAAGGACCTAAGCAAAAAAGA......................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......TGGCGGCTCTGATGAGGAAATGAAA.......................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................CATTAGAGATTGGTAAAGGGG...................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTGTTGAACTCTTGTGTTGCCT.................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................GCATTTGCATGGTTTGTTGA................................................................................................................................................................................................. 20 3 16 0.94 15 14 0 1 0 0 0 0 0 0 0
.................ATGTGGAAAGGAAGGACCT..................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................TTGTTGGTTAAGGGAAA............................................................................................................................................................................................................................................................. 17 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................GCATTTGCATGGTTTGTTGAA................................................................................................................................................................................................ 21 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTGTTCTGTTGTACTCTTATGTT...................................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................AACCATAAACGATGCCAACTC..................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................GATGGTGGTTAACGGA............................................................................................................................................................................................................................................................... 16 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0
...........................................................................TAAAGGGGGCTCATGGA............................................................................................................................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0
............................................................................................TGTTTGTTAAGCGGAAAGTCG........................................................................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0
......................................................................................TATGGGTGTTGGGTAGGGGA............................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0
.................................................................TAGAGTTTGGTAGAGGG....................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0
..................................................................AGAGATCGCTTAAGGGGGT.................................................................................................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.........CCGCTCTGATGAGGA................................................................................................................................................................................................................................................................................................................................................. 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0
............................................AAGACGGTACGCGGAATC........................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................CTAAGGGGGGCTTATGGA............................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..........................AGAAGGACCTAAGGAAATA............................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGGCGACCGCCGAGACTACTCCTTTACTTCCTGGATTCGTTTTTTCTGCCATTCGCTTTTGGTAATCTCTAACCATTTCCCCCAAATACCTACAACCAATTCCCTTTTCAGCGATTTAGCCCGCTCAAAATGAGTTAACAACCAAGACGTAAACAAACAAAACAACTTGAGAACACAACGGAAGTAAGTTTTAAGCGTTACACAAGTGGTAAACCGTGACATAAGCATATAACAAAGCAAAAACACAACGCGGGTTAGATGGTTTGAATGTAGTTGTGGTGTTGGTGGTTTATTGTTTGTTGTTGGTGTCTGCTACGGTTCAGGTTTCTGTTATGTTTTAGCCTATTCTGGTTGTGCTTG
************************************************************************************************************************************************************************************.....((((....(((((.(((...........))).))))).....)))).********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................................................................................................................................................................GTCTGCTACGGTTCAGGTTTC................................ 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TGTTGGTGTCTGCTACGGTTC....................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AGGTTTTTGTTATGTTTTAGC.................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATTCGCTTTTGGAAATCTC................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GCTACGGTTCAGGTTTCTG.............................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGATGGTTTGAAGGTA........................................................................................ 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................CATAAGGGAAGCAAGTTTTAA...................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................TTGTTTGGAGTTGGTGTATGC............................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................................................TGTCTGCTAAGGCTCAG..................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................TCTTTTTGGTGTCAGCTACG........................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:9455337-9455697 + dsi_26882 ATCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCGAAAA-CCATTAGAGATT--GGTAAAG---------GGGGTTT-ATG---GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----CTAAATCGGGCGAGTT-------------------------------------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--CTTCATTCAAAATTCGCAATGTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CCAACACGAAC
droSec2 scaffold_0:10162960-10163345 + ATCTGCTGGAGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCAAAA-AAA-TAGAAATT--GGTAAAG---------GGGGTTT-ATG---GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----CTAAATCGAGCGAGTTTTCTATTATTCGATTGTAAAGGGAAT-----------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--TTTCATTCAAAATTCGCAATGTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAA-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CAAACACGAAC
dm3 chr3R:11795267-11795653 - ATCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCAAAG-CCATTAGAGATC--GGTAAAG---------GGGGTTT-ATG---GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----CTAAGTCGAGCGAGTTTTCTTTTAATCGATTTTAAAGGGAAT-----------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTCTT-----GTTGAACTCTTG--TGTT---GC--TTTCATTCAAAATTCGCAATTTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CATCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CCAACACAAAC
droEre2 scaffold_4770:11316790-11317176 - ATCCGCCGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCAAAG-CCTTTAGAGATC--GGTTAAG---------CGGGTTA-ATA---GATGTTGG---------------------------TTAAG--GGAACA-------------GTC----------------------------------------------------G-----CTAAATCGAGCGAGATCTCTTTTAATCGAATGCTTAGGCCAT-----------------------------------------------------A--CT-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAAATCTTG--TGTT---GC--TTTCTTTCAAAATTCGCAATGTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CTCACACGAAC
droYak3 3R:14641299-14641685 + ATCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCACAA-CCATTAGAGATC--GGTTAAG---------CGGGTTA-ATG---GATGTCGG---------------------------TTAAG--AGAAAA-------------GTT----------------------------------------------------G-----CTAAATCGAGCGAGTTCTCTTTTAATCGATTTCTAAAGCCAT-----------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAAATCTTG--TGTT---GC--TTTCATTCAAAATTCGTAATATG-TT-TACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CCAACACGAAC
droEug1 scf7180000409797:1741537-1741933 + GTCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGATCTGAACAAAAAAGACGGTAAGAGAAAA-CTAGAACGTATA--G-TTAAG--------GTGGTTTTGAAG---GATGTCGG---------------------------TTGAT--GGAATC-------------GTCGAAA---------------------------------------------ATTGTAATT-----TCAAGC-AGTTTGTTTGTGA--------------------------------------------------CCGATATCTAGCGTAAACATT--TA-ATTATTTGTTGGTT-TCGCATT-TGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--TTTCATTCAAAATTCCCAATGTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAAAACAAAATCGGATAAAA------CCGACACGAAC
droBia1 scf7180000302136:1403385-1403796 - ATCCGCTGGCGGCTC------------------AGATGAGGAAATGAAGGATCTAAGCAAAAAAGACGGTAAGAGAAAA-ACAGAAGCAGTC--GGTTCGG---------TAGGTTCAGTG---GATATCGG---------------------------TTAAG--GAAATT-------------CTCGATA---------------------------------TCATTTAATTTTATTGTAAAT-----TCAAAG-ACCTTTCTTGTTA--------------------------------------------------CTGATATCCATTGGAAACGTA--TA-CTCATTTGTTGGTT-CCGCATT-CGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--CTTCACTCAAAATTCGCAATGTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACAACCAC------------CACCAAATAA---CAAACCACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAAAACAAAATCGGATAAGA------CCAACACGAAC
droTak1 scf7180000415242:330833-331068 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TA-CCCATTTGTTGGTT-CCGCATT-TATTTGTTTT-------------------TATT---GT--TTGTACTCAAAATTCGCAATATG-TT-CTCCATTTGGCA---CTGTA--TTCGTCTATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACAACAACCACCACTATCACCACCAAATAA---CAAACAACAACCAC-----------------AGACGAGGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAAC
droEle1 scf7180000491080:1581519-1581916 - ATCCGCTGGCGGTTC------------------TGATGAGGAAATGAAGGATTTAAGCAAGAAAGACGGTAAGGCAAAA-CTAGGATAAGTC--GATTAAA--------GTGGATTGAATG---GATATCGG---------------------------TTAAA--AGCAGAGTTA-------------------------------------------------------------AG-T-----CTAATTTAACCTAATTTCGTGTTAA--------------------------------------------------CCGATATTCAAATGTAAT--GTATT-TTCTTTTGTTGGTT-GCCTGTT-TGTTTGTTTT----------------G--TATT---CT--TTGCATTCAAAATTCGCAATTTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACATCAACACCACCACCACCAACA-ACCCAAATAA---CAAACAACAACTAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAAC
droRho1 scf7180000779241:177739-178170 + ATCCGCTGGGGGTTC------------------TGATGAGGAAATGAAGGATTTAAGCAAGAAAGACGGTAAGTCAAAA-TCAGAAGAAGTC--G---AAG---------TGGCTTGAATG---GATATCTG---------------------------TTAAA--ACTAGCGTTG-------------AATATTAATATTAATATGTCTCTGATATAGACAACTTGATTTAA---TATTATAAATTCAAT----CCTATTTTTATGCTAA--------------------------------------------------CCGATATTCAAAG------TATATT-TTTTATTGTTGATT-TCGCATT-T----GTTTT-----GTTGAACTCTTT--TGTT---GC--TTTCATTCAAAATTCGCCATGTG-TT-CTTCATTTGGCA---CTGTA--TTTGTATATTGTTTCGTTTTTGTGTTACGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACCACCAA-------------CCCAAATAA---CAAACAACAATCAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAAC
droFic1 scf7180000452523:1175300-1175690 - TTCGGCTGGCGGCTC------------------TGATGAGGAAACGAAGGATCTAAGCAAGAAAGACGGTAAG---AAA-CCAAAAAGAGTC--GGTTTAA---------CGAGTTTATTG---GATGTCGGGGTGTATAAATTCATACAG---T---ATCAATTTGG----A--T-----------------------------------------------------------------------------------------------------------------------------------------ACTGTTACCCGATATTCAAAG-AAAAATA--TA-CTTATTTGTTGGTT-CCGATTT-T----ATTTT-----GTTGAACTTTTG--AGTT---GC--TTTCATCCAAAATTCGATATGTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACAACACCACCACCACCA-------ACCCAAATAA---CAAACCACAACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAAC
droKik1 scf7180000302639:880293-880710 + AGCTGCCGGCGGATC------------------AGATGAGGACATGAAGGATCTAAGCAAAAAAGACGGTAAGATA--TCCTAGAATATACATCA--TATG---------AGGGTTT-CTT---GAAG---G--------------------TTT---ATCAAATAGG----A--TATCAACGAAGTC----------------------------------------------------------CTTTTTTGAGTTATTTATCTTTTAATTT-TTGTCCCGGAAAT-----------------------------------------------------C--CATC-TCTGTGATCTCT-CTGCATCGTTTTTGTTTT-----TGTAAACTCTTG--CGTT---TTTATTGTACTCAAAATTTGCAACATGTCT-ATCCATTTGGCA---CTGTACTTTTGTATTTTGTTTCGTTTTTGTGTTGCGCCCAAA------TCTACCAA-------AATCTGCTACCAAAAAACCACATCAACACCATCACCAA------------ACCCAAAAAA---CCAA-AACCACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAAC
droAna3 scaffold_13340:16400697-16401058 - GCCAGCGGCTGGAGC------------------AGATGAGGAAATGAAAGATTTAAACAAGAAGGACGGTAAGTCG--G-CTTTTAGGGAT------------------------------GTAGGA-------------------ATGAGGATTTTG-AAGAA--AAAAGGGTTTAGTAA--------------------------------------------------------------------------------------------------------------------------------TG------------------------------A--TA-CTC-TTTGTTTGTCGCTGTACT-TAGTT-TC-TGTTTTATG----TCTTGTATGTT---GT--GTTCGTACGAAATTCGCAATG---TT-TTCCATCTGGCA---CTGTA--TTTGTATTTTGTTTCGTTTTTGTGTTCCGCCCAACAACCGAACCGCCAA--------------------AAACCCACATCAACCACCACACCAAC-----------AACAACAAAA---TAAT-AATA-------ATACCTGAACGAA-AAGACGATGCCAAGCCCAAAGACAAGACGAAATCGGATAAGA------CCAACACGAAC
droBip1 scf7180000396708:3646006-3646352 + AACAGCTGCAGGCAC------------------AGATGAGGAAATGAAAGATTTAAGCAAGAAAGACGGTAAGTCG-------------------GGTTGGTGGGGGAT------------GCAGAGATCA---------------GGAAGGATT---AG-GATTAGG----A--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTTTTTCCTCCATT-TAGT--------------------TTCTGT-TTCATGT--TTTTGTACAAAATTCGTAATGTT-TTTCCATATTTGGCA---CTGTAT-TTTGTATTTTGTTTCGTTTTTGTGTTACAACCGA-------ACCACCACCACCACCAC---------------TCACATCAACAACAACAACAA------------TACCAACCAA---CCAACAACAACAACTGATACCTTAACGATATAGACGATGCAAAGTCCAAAGACAAGACGAAATCGGATAAGA------CCAACACGAAC
dp5 2:20493965-20494272 - dps_676 AGCTGCCGGTGGCGCAGGCGGAGGAGCAGGAAGTGATGAGGAAATGAAGGATCTTACCAAGAAAGACGGTAATTCA------------------------------------------ATG---GATATCT---------------ATAGAGATTT------------------------------------------------------------------------------------------------------------------------------------------------TAAGAGGGAATGTTCTGTTTCC---------------------TTT-C--------------------------T-----TTTTTGTTGA----TTGAAT-TTGATTT--TAATGCGC-AAATTTGTAATTCG-TT-TGAAATGTGGCCGTCATTTA--TTTGTTTTTTGTTTCGTTTTTATGTT----------------C-------------------------------TACAACAACAACAACAACA----------------------AAAACCAC-CAACACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATA---CCAAGACGAACACAAAC
droPer2 scaffold_3:3242503-3242807 - AGCTGCCGGTGGCGCAGGCGGAGGAGCAGGAAGTGATGAGGAAATGAAGGATCTTACCAAGAAAGACGGTAATTCA------------------------------------------ATG---GATATCT---------------ATAGAGATTT------------------------------------------------------------------------------------------------------------------------------------------------TAAGAGGGAATGTTCTGTTTCC---------------------TTT-C--------------------------T-----TTTTTGTTGA----TTGAAT-TTGATTT--TAATGCGC-AAATTTGTAATTCG-TT-TGAAATGTGGCCGTCATTTA--TTTGTTTTTTGTTTCGTTTTTATGTT----------------C-------------------------------TACAACAACAACAA---CA----------------------AAAACCAC-CAACACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATA---CCAAGACGAACACAAAC
droWil2 scf2_1100000004902:10691171-10691346 - AAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAGTTATTTTCCAAGTTTTTGGCCAACATTATTC----------------------------------TATTTGTTTGTT-TCTTATT-TTTTATTT-T--------------------------------------------------------------------------------------ATTTTATTTTCTGTTTGTTGA------------------------------------------------------------AAC---------------AATAACACAA---TAAAAAACAAACAC-----------------AGACGATGCAACATCCAAAGACAAAACGAAAACGGATAAGCCCAACACCACCACAAAC
droVir3 scaffold_13047:2470896-2470962 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---CACACA--AGCTAC-----------------AGACGAAGCCAAGTCCAAAGACAAAACGAAATCGGATAAGC------TCAACACAAAC
droMoj3 scaffold_6328:658074-658159 - C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------CCAACCAA-------AA-------------------TCGAAGACCAAAGC---------------CTACAAAAAA---TAAACAACAATAAC-----------------AGAAG----CAACAACAACAACA------------ACAACA------GCAACAA-AAT
droGri2 scaffold_15074:6045261-6045332 - AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-CACAACAAAGCCAC-----------------AGACGACGCCAAGTCCAAAGACAAAACGAAATCGGATAAGC------TCAACACAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCGAAAA-CCATTAGAGATT--GGTAAAG---------GGGGTTT-ATG---GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----CTAAATCGGGCGAGTT-------------------------------------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--CTTCATTCAAAATTCGCAATGTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................T--TA-CTCAATTGTTGGTT-CTGCATT-TGTT.....................................................................................................................................................................................................................................................................................................2811.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TT-----GTTGAACTCTTG--TGTT---GC--.................................................................................................................................................................................................................................................................2011.00100000010000000000
...............................................AGGACCTAAGCAAAAAAGACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.........................................AAATGAAGGACCTAAGCAAAAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
......TGGCGGCTC------------------TGATGAGGAAATGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.................................................................................CATTAGAGATT--GGTAAAG---------GGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................TT-----GTTGAACTCTTG--TGTT---GC--CT...............................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
ATCTGCTGGAGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCAAAA-AAA-TAGAAATT--GGTAAAG---------GGGGTTT-ATG---GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----CTAAATCGAGCGAGTTTTCTATTATTCGATTGTAAAGGGAAT-----------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--TTTCATTCAAAATTCGCAATGTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAA-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CAAACACGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................GATGAGGAAATGAAGGACCTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TT-CACCATTTGGCA---CTGTA--TTCGT...........................................................................................................................................................................................................2611.0011000
dm3
ATCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCAAAG-CCATTAGAGATC--GGTAAAG---------GGGGTTT-ATG---GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----CTAAGTCGAGCGAGTTTTCTTTTAATCGATTTTAAAGGGAAT-----------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTCTT-----GTTGAACTCTTG--TGTT---GC--TTTCATTCAAAATTCGCAATTTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CATCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CCAACACAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..................................GATGAGGAAATGAAGGACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACAAAATCGGATA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CATT-TGTTTGTCTT-----GTTGAAC...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACAAAATCGGATAAGA------CCAACAC....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GGGTTT-ATG---GATGTTGG---------------------------TTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................GGAAATGAAGGACCTAAGCAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TT-ATG---GATGTTGG---------------------------TTAAG--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----C....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....................................TGAGGAAATGAAGGACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGGATAAGA------CCAACACA...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACAAAATCGGATAAGA------...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCGGATAAGA------CCAACACAA..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCGTTTTTGTGTTGCGC..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................AATGAAGGACCTAAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AAGGACCTAAGCAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GAAATGAAGGACCTAAGCAAAAAAGACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGGCA---CTGTA--TTCGTA..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCGCTGGCGGCTC------------------TGATGAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTTT-ATG---GATGTTGG---------------------------TTAAG--G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................TAATCGATTTTAAAGGGAAT-----------------------------------------------------......................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATCGGATAAGA------CCA........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACAAAATCGGATAAGA------CCAA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGATAAGA------CCAACACA...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACAAAATCGGATAAGA------CCAACACA...2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGTTTCGTTTTTGTG........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAATCGGATAAGA------CCAACAC....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATCCGCTGGCGGCTC------------------TGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GATGTTGG---------------------------TTAAG--GGAAAA-------------GTC----------------------------------------------------G-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................AGGAAATGAAGGACCTAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG-TT-CACCATTTGGCA---CTGT...................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACAAAATCGGATAAGA------...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACAAAATCGGATAAGA------CC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGAAATGAAGGACCTAAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAATGAAGGACCTAAGCAAAAAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GATGAGGAAATGAAGGACCTAAGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TTGTTGGTT-CTGCATT-TGTTTG...................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAAATCGGATAAGA------CC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGAAATGAAGGACCTAAGCAAAAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCAAAGACAATACAAAA...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................AGGACCTAAGCAAAAAAGACGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGCTC------------------TGATGAGGAAATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAAATCGGATAAGA------CCA........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGAGGAAATGAAGGACCTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TGTTGGTT-CTGCATT-TGTTTGT..................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCGGCTC------------------TGATGAGGAAATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACAAAATCGGATAAGA------CCAAC......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAATACAAAATCGGAT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAAATCGGATAAGA------CCAACA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AATGAAGGACCTAAGCAAAAAAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...CGCTGGCGGCTC------------------TGATGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGATGAGGAAATGAAGGACCTAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GAAATGAAGGACCTAAGCAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGGATAAGA------CCAACACAA..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................G--GGAAAA-------------GTC----------------------------------------------------G-----CTAAGTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCGGATAAGA------CCAACAC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............C------------------TGATGAGGAAATGAAGGACCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATCCGCCGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCAAAG-CCTTTAGAGATC--GGTTAAG---------CGGGTTA-ATA---GATGTTGG---------------------------TTAAG--GGAACA-------------GTC----------------------------------------------------G-----CTAAATCGAGCGAGATCTCTTTTAATCGAATGCTTAGGCCAT-----------------------------------------------------A--CT-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAAATCTTG--TGTT---GC--TTTCTTTCAAAATTCGCAATGTG-TT-CACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CTCACACGAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................ACCTAAGCAAAAAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
ATCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGACCTAAGCAAAAAAGACGGTAAGCCACAA-CCATTAGAGATC--GGTTAAG---------CGGGTTA-ATG---GATGTCGG---------------------------TTAAG--AGAAAA-------------GTT----------------------------------------------------G-----CTAAATCGAGCGAGTTCTCTTTTAATCGATTTCTAAAGCCAT-----------------------------------------------------T--TA-CTCAATTGTTGGTT-CTGCATT-TGTTTGTTTT-----GTTGAAATCTTG--TGTT---GC--TTTCATTCAAAATTCGTAATATG-TT-TACCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAGTCCAAAGACAATAC...............................2311.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCGGATAAGA------CCAACACG...2211.00100000010000
droEug1
GTCCGCTGGCGGCTC------------------TGATGAGGAAATGAAGGATCTGAACAAAAAAGACGGTAAGAGAAAA-CTAGAACGTATA--G-TTAAG--------GTGGTTTTGAAG---GATGTCGG---------------------------TTGAT--GGAATC-------------GTCGAAA---------------------------------------------ATTGTAATT-----TCAAGC-AGTTTGTTTGTGA--------------------------------------------------CCGATATCTAGCGTAAACATT--TA-ATTATTTGTTGGTT-TCGCATT-TGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--TTTCATTCAAAATTCCCAATGTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACAAC---------------CACCAAATAA---CAAACAACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAAAACAAAATCGGATAAAA------CCGACACGAACSizeHit CountTotal NormTotal
No Reads
droBia1
ATCCGCTGGCGGCTC------------------AGATGAGGAAATGAAGGATCTAAGCAAAAAAGACGGTAAGAGAAAA-ACAGAAGCAGTC--GGTTCGG---------TAGGTTCAGTG---GATATCGG---------------------------TTAAG--GAAATT-------------CTCGATA---------------------------------TCATTTAATTTTATTGTAAAT-----TCAAAG-ACCTTTCTTGTTA--------------------------------------------------CTGATATCCATTGGAAACGTA--TA-CTCATTTGTTGGTT-CCGCATT-CGTTTGTTTT-----GTTGAACTCTTG--TGTT---GC--CTTCACTCAAAATTCGCAATGTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACAACCAC------------CACCAAATAA---CAAACCACAACCAC-----------------AGACGATGCCAAGTCCAAAGACAAAACAAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
droTak1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TA-CCCATTTGTTGGTT-CCGCATT-TATTTGTTTT-------------------TATT---GT--TTGTACTCAAAATTCGCAATATG-TT-CTCCATTTGGCA---CTGTA--TTCGTCTATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACAACAACCACCACTATCACCACCAAATAA---CAAACAACAACCAC-----------------AGACGAGGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
droEle1
ATCCGCTGGCGGTTC------------------TGATGAGGAAATGAAGGATTTAAGCAAGAAAGACGGTAAGGCAAAA-CTAGGATAAGTC--GATTAAA--------GTGGATTGAATG---GATATCGG---------------------------TTAAA--AGCAGAGTTA-------------------------------------------------------------AG-T-----CTAATTTAACCTAATTTCGTGTTAA--------------------------------------------------CCGATATTCAAATGTAAT--GTATT-TTCTTTTGTTGGTT-GCCTGTT-TGTTTGTTTT----------------G--TATT---CT--TTGCATTCAAAATTCGCAATTTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TCACATCAACATCAACACCACCACCACCAACA-ACCCAAATAA---CAAACAACAACTAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
droRho1
ATCCGCTGGGGGTTC------------------TGATGAGGAAATGAAGGATTTAAGCAAGAAAGACGGTAAGTCAAAA-TCAGAAGAAGTC--G---AAG---------TGGCTTGAATG---GATATCTG---------------------------TTAAA--ACTAGCGTTG-------------AATATTAATATTAATATGTCTCTGATATAGACAACTTGATTTAA---TATTATAAATTCAAT----CCTATTTTTATGCTAA--------------------------------------------------CCGATATTCAAAG------TATATT-TTTTATTGTTGATT-TCGCATT-T----GTTTT-----GTTGAACTCTTT--TGTT---GC--TTTCATTCAAAATTCGCCATGTG-TT-CTTCATTTGGCA---CTGTA--TTTGTATATTGTTTCGTTTTTGTGTTACGCCCAA-------TCTACCAA-------AC---------------TCACATCAACACCACCACCAA-------------CCCAAATAA---CAAACAACAATCAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
droFic1
TTCGGCTGGCGGCTC------------------TGATGAGGAAACGAAGGATCTAAGCAAGAAAGACGGTAAG---AAA-CCAAAAAGAGTC--GGTTTAA---------CGAGTTTATTG---GATGTCGGGGTGTATAAATTCATACAG---T---ATCAATTTGG----A--T-----------------------------------------------------------------------------------------------------------------------------------------ACTGTTACCCGATATTCAAAG-AAAAATA--TA-CTTATTTGTTGGTT-CCGATTT-T----ATTTT-----GTTGAACTTTTG--AGTT---GC--TTTCATCCAAAATTCGATATGTG-TT-CTCCATTTGGCA---CTGTA--TTCGTATATTGTTTCGTTTTTGTGTTGCGCCCAA-------TCTACCAA-------AC---------------TTACATCAACAACACCACCACCACCA-------ACCCAAATAA---CAAACCACAACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
droKik1
AGCTGCCGGCGGATC------------------AGATGAGGACATGAAGGATCTAAGCAAAAAAGACGGTAAGATA--TCCTAGAATATACATCA--TATG---------AGGGTTT-CTT---GAAG---G--------------------TTT---ATCAAATAGG----A--TATCAACGAAGTC----------------------------------------------------------CTTTTTTGAGTTATTTATCTTTTAATTT-TTGTCCCGGAAAT-----------------------------------------------------C--CATC-TCTGTGATCTCT-CTGCATCGTTTTTGTTTT-----TGTAAACTCTTG--CGTT---TTTATTGTACTCAAAATTTGCAACATGTCT-ATCCATTTGGCA---CTGTACTTTTGTATTTTGTTTCGTTTTTGTGTTGCGCCCAAA------TCTACCAA-------AATCTGCTACCAAAAAACCACATCAACACCATCACCAA------------ACCCAAAAAA---CCAA-AACCACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
droAna3
GCCAGCGGCTGGAGC------------------AGATGAGGAAATGAAAGATTTAAACAAGAAGGACGGTAAGTCG--G-CTTTTAGGGAT------------------------------GTAGGA-------------------ATGAGGATTTTG-AAGAA--AAAAGGGTTTAGTAA--------------------------------------------------------------------------------------------------------------------------------TG------------------------------A--TA-CTC-TTTGTTTGTCGCTGTACT-TAGTT-TC-TGTTTTATG----TCTTGTATGTT---GT--GTTCGTACGAAATTCGCAATG---TT-TTCCATCTGGCA---CTGTA--TTTGTATTTTGTTTCGTTTTTGTGTTCCGCCCAACAACCGAACCGCCAA--------------------AAACCCACATCAACCACCACACCAAC-----------AACAACAAAA---TAAT-AATA-------ATACCTGAACGAA-AAGACGATGCCAAGCCCAAAGACAAGACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AACAGCTGCAGGCAC------------------AGATGAGGAAATGAAAGATTTAAGCAAGAAAGACGGTAAGTCG-------------------GGTTGGTGGGGGAT------------GCAGAGATCA---------------GGAAGGATT---AG-GATTAGG----A--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTTTTTCCTCCATT-TAGT--------------------TTCTGT-TTCATGT--TTTTGTACAAAATTCGTAATGTT-TTTCCATATTTGGCA---CTGTAT-TTTGTATTTTGTTTCGTTTTTGTGTTACAACCGA-------ACCACCACCACCACCAC---------------TCACATCAACAACAACAACAA------------TACCAACCAA---CCAACAACAACAACTGATACCTTAACGATATAGACGATGCAAAGTCCAAAGACAAGACGAAATCGGATAAGA------CCAACACGAACSizeHit CountTotal NormTotal
No Reads
dp5
AGCTGCCGGTGGCGCAGGCGGAGGAGCAGGAAGTGATGAGGAAATGAAGGATCTTACCAAGAAAGACGGTAATTCA------------------------------------------ATG---GATATCT---------------ATAGAGATTT------------------------------------------------------------------------------------------------------------------------------------------------TAAGAGGGAATGTTCTGTTTCC---------------------TTT-C--------------------------T-----TTTTTGTTGA----TTGAAT-TTGATTT--TAATGCGC-AAATTTGTAATTCG-TT-TGAAATGTGGCCGTCATTTA--TTTGTTTTTTGTTTCGTTTTTATGTT----------------C-------------------------------TACAACAACAACAACAACA----------------------AAAACCAC-CAACACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATA---CCAAGACGAACACAAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGATA---CCAAGACGAAC......2511.0010100000000
droPer2
AGCTGCCGGTGGCGCAGGCGGAGGAGCAGGAAGTGATGAGGAAATGAAGGATCTTACCAAGAAAGACGGTAATTCA------------------------------------------ATG---GATATCT---------------ATAGAGATTT------------------------------------------------------------------------------------------------------------------------------------------------TAAGAGGGAATGTTCTGTTTCC---------------------TTT-C--------------------------T-----TTTTTGTTGA----TTGAAT-TTGATTT--TAATGCGC-AAATTTGTAATTCG-TT-TGAAATGTGGCCGTCATTTA--TTTGTTTTTTGTTTCGTTTTTATGTT----------------C-------------------------------TACAACAACAACAA---CA----------------------AAAACCAC-CAACACAAC-----------------AGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATA---CCAAGACGAACACAAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................AAGTGATGAGGAAATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..................................GATGAGGAAATGAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGATA---CCAAGACGAAC......2011.001100000
droWil2
AAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAGTTATTTTCCAAGTTTTTGGCCAACATTATTC----------------------------------TATTTGTTTGTT-TCTTATT-TTTTATTT-T--------------------------------------------------------------------------------------ATTTTATTTTCTGTTTGTTGA------------------------------------------------------------AAC---------------AATAACACAA---TAAAAAACAAACAC-----------------AGACGATGCAACATCCAAAGACAAAACGAAAACGGATAAGCCCAACACCACCACAAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGACAAAACGAAAACGGATAAGC.................2711.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAAAACGAAAACGGATA....................2111.00101000
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---CACACA--AGCTAC-----------------AGACGAAGCCAAGTCCAAAGACAAAACGAAATCGGATAAGC------TCAACACAAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAACGAAATCGGATAA...................2011.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGTCCAAAGACAA..................................1811.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------AGACGAAGCCAAGTCCAAAGACA...................................2511.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------CCAACCAA-------AA-------------------TCGAAGACCAAAGC---------------CTACAAAAAA---TAAACAACAATAAC-----------------AGAAG----CAACAACAACAACA------------ACAACA------GCAACAA-AATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-CACAACAAAGCCAC-----------------AGACGACGCCAAGTCCAAAGACAAAACGAAATCGGATAAGC------TCAACACAAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:12 AM