ID:

dsi_2687

 Coordinate:

2r:10480447-10480681 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.9 -46.9 -46.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTGGGCTGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTGGAGGCCTATGCCCCAATGAATCCCCCACCTTAGAGCTAGTTTTATATATGTGTTGTGCTTCTATCCGTTTACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCAGATTGGTTCATAAATACCATGAGAAATTTTCTACTGCAAAAAAAGAGCAACCAACCAAGTGCACTTATGAAATAGTTTTAATATCGTTACTAATAAAACGTTTTTAATGACCACTACAGAACCTTATGTCCGAACTGGAGAAGCGCGAGATGCACTTTGCCACCATCCT
**************************************************(((.((((.(((....))).................(((((((((.(((((((..........((((.((......)).))))(((((((((((..(((......(((...))).....((((........))))..((((...))))..(((.........))).)))))))))))))).))))))))))))))))..((((((..(((.....)))..)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGCGAGATGCA............... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TATGTCCGAACTGGAGAAGCGCGAGAT.................. 27 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TGGAGAAGCGCCAGATGCAA.............. 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................TTTACAAGCGTGCATTTGGTA.............................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGAACTGGAGAAGCGCGAGATGCA............... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CTTATGTCCGAACTGGAGAA........................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGCGAGATGC................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................AACTGGAGAAGCGCGAGA................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......TGACAAACAACTCGATCTTCC................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................TACAGAACCTTATGTCCGAACTGGAGA............................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................ATGTCCGAACTGGAGAAGCGCGAGG................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ACCTTATGTCCGAACTGGAGA............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TCCGAACTGGAGAAGCGCGAGA................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
............AACAACTTGATCTTCCCTCCGTGC........................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGCGCGAGG................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGCGCGAGA................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGCGA..................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAACTGGAGAAGC......................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................GGAGCCCTATGCCCGAA...................................................................................................................................................................................................................................................................... 17 2 10 0.20 2 0 0 0 0 0 0 0 0 0 0 2 0
.........................................................GAGCCCTATGCCCGAA...................................................................................................................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3 0
........................................................GCAGGCCTATGCCCGAA...................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................TATGAGTTGTGCTTC......................................................................................................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................AGGTAAGTGGAGTCCGA.............................................................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TTCGACTGCAAAAAAA............................................................................................................................. 16 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................GTCCGAAGTGGAGAA........................... 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TTCAACTGCATAAAAAGA........................................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................AGGTAAGGGAAGGCCT............................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGACCCGACTGTTTGTTGAGCTAGAAGGGAGGCACGTGTCTATGATGCTCCATTCACCTCCGGATACGGGGTTACTTAGGGGGTGGAATCTCGATCAAAATATATACACAACACGAAGATAGGCAAATGTTCGCACGTAAACCATTACCGCTGCTCCATTCTGGGTCTAACCAAGTATTTATGGTACTCTTTAAAAGATGACGTTTTTTTCTCGTTGGTTGGTTCACGTGAATACTTTATCAAAATTATAGCAATGATTATTTTGCAAAAATTACTGGTGATGTCTTGGAATACAGGCTTGACCTCTTCGCGCTCTACGTGAAACGGTGGTAGGA
**************************************************(((.((((.(((....))).................(((((((((.(((((((..........((((.((......)).))))(((((((((((..(((......(((...))).....((((........))))..((((...))))..(((.........))).)))))))))))))).))))))))))))))))..((((((..(((.....)))..)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
.............................................................................................................................................................................................................................................................................................TTGGAATACAGGCTTGAC................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................CAAGACGAAGATAGGCCA................................................................................................................................................................................................................. 18 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................ACGGGGTTACGTAGGGG............................................................................................................................................................................................................................................................. 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AATGATGAATTGGCAAAAATT.............................................................. 21 3 11 0.91 10 0 0 8 0 0 0 1 0 1 0
..........................................................TCCGGATGCGGGGTTTCTTTG................................................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................CCGGGTCTAACCAAGCAT............................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................GTCTTTATAGTACTCTTTA.............................................................................................................................................. 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAATTACTGGTGAAGACT................................................. 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................ACCATGGCCGCTGCTCCA................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................CGCAAGACGAAGATAGGC................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................AATGATGAATTGGCAAAAAT............................................................... 20 3 20 0.15 3 0 0 2 0 0 0 0 0 1 0
..........................................................................................................................................AAACCGTTCCCGCTGCTC................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1
..............................................GCTCCATTCAGCTCC.................................................................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................GTATTTCTGGTACTC.................................................................................................................................................. 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................CCGGGTCTAACCAAGCATC............................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................AGCTAGGCAAGTGTTCG.......................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0
...........................................................CCGGATACGGGGATGTTTA................................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................AAAAGATGACGATTGTTT............................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................CAAGACGAAGATAGGCCAC................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................ATAGGCTAATGATCGC......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................CTTGTGGCTCTAACCAAG................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10480397-10480731 - dsi_2687 ACTGGGCTGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTG--GAGGCCTATGCC------CCAATG---A-ATCCCC--CACCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCA--GATTGGTTC-AT-----AAA-----TACCATGAG--------------AAATTTTCTACTGC---A--AAAAAAGAGCAA--CCAACCAAGTGCACTTATG-------AAA----TAGTTTT-AAT-A-TCGTTACT----------AATAAAACGTTT-----------TTAATGA-----CC--ACTACAGAACCTTATGTCCGAACTGGAGAAGCGCGAGATGCACTTTGCCACCATCCT
droSec2 scaffold_1:7317937-7318272 - ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTATGAGGTAAGTG--GAGGCCTATGCC------CCAATG---A-ATCCCC--CACCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCC-AGATTGGTTC-AT-----AAA-----TACCATGAG--------------AAATTTTCTACTGC---A--AAAAAAGAGCAT--CCAACCAAGTGCACTTATG-------AAA----TAGTTTT-AGT-A-TCGTTACT----------AATAAAACGTTT-----------TTAATGA-----CC--ACTACAGAACCTTATGTCCGAACTGGAGAAGCGCGAGATGCACTTTGCCACAATCCT
dm3 chr2R:9791028-9791368 - ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTG--GTGGCCTATGCCC-----CGAATG---A-ATCCCC--CCCCTTAGAGCTAGTGTTATA--TATGTGT-TGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCC-AGATTGGTTC-AT-----AAA-----TACCATGAG--------------AAATTTTCTATTGC---A--AAAAAAGAGCAA--CCAACCAAGTGCACTTATA-------AAA----AAATTTTTAAT-A-TCGTTACT----------TATAAAACGTTT-----------TTAATAA-----CC--ACTACAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCCT
droEre2 scaffold_4845:16028418-16028747 + ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACACATACTACGAGGTAAGTT--TAGGCTTATGCC------CCAATG---A-A----TG--CCCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCAC-AAATTGGTTT-AC-----AAA-----TACCATGAG--------------AAATTTTCTATTGC---A--AAA-AAGAGCAA--CCAACCAAGTGCACTTATA-------AAA----TTCATTT-AAT-A-TCTTTACT----------AATAAAACCTTT-----------TTTATGA-----CC--A-TCTAGAACCTAATGTCCGAACTGGAAAAGCGTGAGATGCACTTTGCCACCATCCT
droYak3 2R:7162413-7162743 + ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAAGTACTACGAGGTAAGTG--GTGGCTTATGCC------CAAATG---A-A----TC--CCCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCAC-AAATTGGTTT-AC-----AAA-----TACCATGAA--------------AAATTTTCTTTTGC---A--AAA-ACAAGCAA--CCAACCAAGTGCACTTACA-------AAA----CCCTTTTGAAA-A-TCTTTACT----------AATAAAACCATT-----------TTTATGG-----CC--A-TCCAGAACCTAATGTCCGAACTGGAAAAGCGTGAGATGCATTTTGCCACCATCCT
droEug1 scf7180000409462:3060983-3061327 + ACTGGGCGGACAAACAACTCGATCTACCCTCCGTGCACAGATACTATGAGGTAAGTG--ATGGCCATGGCCATGACCATGTTG---C-A----TC--CACCTAGAGCTAGTTTGATA--TATGTATGTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCCC--GATTGGTTA-CT-----AAA-----TACCATGATT-------------AAAGTTTCTAATAC---A--AAAAAAGAGCAA--CCAACCAAGTGCACTTCTT------CGAT----TCCTGTT-AATAT-AA----------CTTACTAATTTG---TATT----------TTAATAA----CTTCCACAACAGAACCTTATGTCCGAACTGGAGAAGCGTGAAATGCACTTTGCCACCATCCT
droBia1 scf7180000302291:341160-341480 + ACTGGGCGGACAAACAACTCGACCTGCCCTCCGTGCACAGATATTACGAGGTAAATA--GTGGCCA-------------GTAT---A-T----C--CATAATAGAGCTAGTATTATA--TAT----GTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCAC--AATTGGTTC-TC-----AAA-----TACCATTGT--------------AAAATGTACATTTC---A--AA--AAAAGCAT--CCCACCAAGTGCACTATTC-------GAA----TACGTTT-AATAA-AT----------CTAACTAATTGA---AATTG----------GTATGA----TTC--C-CCCAGAACCTTATGTCTGAGCTGGAAAAGCGTGAGATGCACTTTGCAACTATTCT
droTak1 scf7180000415401:840848-841155 + ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--ATGGCATTCGCC------GGGTAA---A-A----TC--CTCTTAGAGCTAGTTTTATATATAT----GTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAA---------------------------A-----TACCAATTG--------------AAAATTTATATTAC---A--AA--AAGAGCAA--CCAACCAAGTGCACTACTC-------GAA----TATGTTT-AATAT-AG----------TTAACTAATTAACT--ATTG------------ATA------TC--C-TTTAGAACCTCATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATTCT
droEle1 scf7180000491271:125248-125578 - ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTG--ATAACGGTCGCC--------GTAG---AGA----TT--CTCGTAGAGCTAGTTTTATA--TATGTGTGTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATTTT--GATTGGTTT-AT-----AAA-----TAGCAA-AG--------------AAATTTTCTATTAC---A--AAA-GAGAGCAA--CCAACCAAGTGCACTACTC-------GAC----AACTTTT-TATAA-CA----------CTTTCTAATTAA---TATTG----------CGTTAA----TTC--C-CCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCCT
droRho1 scf7180000779816:47207-47531 + ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTT--ATGACGGTCGC--------GGTTG---AGA----TA--CTCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T----TT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATTCC--GATTGGTTG-AT-----AAA-----TACCAAAAG--------------AAATTGTATATTAC---A--AAA-AAGAGCAA--CCAACCAAGTGCACTACTC-------GAA----TTCTTTT-GATAC-AA----------CTGTCTGATTAA---TTTTC----------TGTTGA----TTC--C-CCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATACT
droFic1 scf7180000454066:1822595-1822930 + ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATATTACGAGGTAAGTT--TTAGCAGTCGAA--------ATAGAGTA-A----AC--CCCCTAGTGCTAGTTTTATACATAT----GTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCCC--GATTGGTTC-AA-----AAA--AAGTACCAAGAGA-------------AATTTTTCTATTAT---A--AAA-AAGAGCAA--CCAACCAAGTGCACTATTT-------GAT----TATTTTT-TATAA-GT----------TTAACTAATTGA---TATTT----------TGTTGA----TAC--C-CACAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCTT
droKik1 scf7180000301798:120387-120731 - ACTGGGCGGACAAGCAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTGCGACGGCAT---CC------CTCTTG---AAA----CC--CGTCTAGAGCTAGTTTTACATATTT----GTGTTGTGCTTCCA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGAGATC-CAATTGGTTTCGT----TAAA-----TGCCAAGAGA-----------T-AAATTTTCTATTTCCGAA--AAAAGAGAGCAAATCCAACCAAGTGCACTTCCT-------AGG----TACTGTT-TTC----------TATAGCTTTCTAATGCA---TTTTT-------CCCCAATTC-----CC--G-CACAGAACCTTATGTCCGAGCTGGAGAAGCGTGAAATGCACTTCGCCACCATTCT
droAna3 scaffold_13266:17093580-17093913 - ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--GT----------------CCCTAG---AT------GCTAGCCTAGTAATAGCTTCCAA--TAC----GTGTTGTGCTTCTA---T-TTGTT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCCCAGATTGGTTA-T---------------CCTTTGAAACTACTTTGAAACAAAATTATTTATTCT---T--TGAAAAATGCAA--CCAACCAAGTGCACTTAAG---AGTAGCTCATG---TTT--TAA-T-CCATTACT----------AATAAT---TATA----------TTCTTGA-----CC--C-TTTAGAACCTTATGTCCGAGCTGGAGAAGCGCGAGATGCACTTTGCCACCATCCT
droBip1 scf7180000396735:339855-340166 - ACTGGGCGGACAAGCAACTCGATCTGCCCTCCGTGCACAGATACTACGAGGTAAGTG--C----------C------CCATAG---AC------GCTAGCCTAGTAATAGTTTCCAA--TAC----GTGTTGTGCTTCTG---T-CTGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCA--GATTGGTTT-TT---CCAAA-----TACTCTGAA------------------------TTT----A--AAAAAATTGCAA--CCAACCAAGTGCACTTGCC-------AAG------CTTTC-AAG-ATTCCTTACT----------AATACT---CATG-------TCCTGTTTGG-----CC--C-TTTAGAACCTTATGTCCGAGCTGGAGAAGCGCGAGATGCACTTTGCCACCATCCT
dp5 3:8067170-8067513 - ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--GCGG----GACTAGGACTCCTCAG---AGT----T--CACCTTAGAGCTAGTTTCATA--TGA----GTGTTGTGCTTCTA---TTCTGTTTCTGCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCAC--AATTGGTTT-AA-----AAA-----TTCAATGAAATTACATG------AAATT--C---------A--TCCGAAAAGCAACTCCAACCAAGTGCACTTCTG---TTTCGACCCTA----TT-TTAT-T-CCATCACT----------CACCAGAC--ACTGATTGTT--TT----------TTC--A-TCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCTT
droPer2 scaffold_4:1980755-1981098 - ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--GCGG----GGCTAGGACTCCTCAG---AGT----T--CACCTTAGAGCTAGTTTCATA--TGA----GTGTTGTGCTTCTA---TTCTGTTTCTGCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCAC--AATTGGTTT-AA-----AAA-----TTCAATGAAATTACATG------AAATT--CATCCG-----------TAAAGCAACTCCAACCAAGTGCACTTCTG---TTTCGACCCTA----TT-TTAT-T-CCATCACT----------CACCAGAC--ACTGATTGTT--TT----------TTC--A-TCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCTT
droWil2 scf2_1100000004822:1418088-1418406 + ACTGGGCGGACAAACAACTCGATTTGCCCTCAGTGCACAGATACTATGAGGTAAGTA--T----------C--------TCTG---A-T----C--TTTCAT------AGATT--AA--TAA----GTGTTAAGTTTCTGAAAATTTATAATTACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA--------TTGGAAA-TC-----AAATA---TTGAACGAA--------------AATTGTACAAAAGC---A--AAA-AAAAAAAA--CCAACCAAGTGCACTTTAA-TGATTTGTAGATA----AT-TTAT------ATGCT----------AATAAT---TTTA-------TACCGCTTGTCCATTTC--T-AACAGAACCTAATGTCCGAACTGGAAAAGCGTGAAATGCACTTTGCCACCATCTT
droVir3 scaffold_12875:6280534-6280762 + ---------------------------------------------------------------------------------------------------------------TTTTTA--TAT----GTGTTGTGCTT-TA---T-CTAAT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA--------TCGGTTC-TA-----AAT-----TCCCTCGGGA-------------ATATTTTC---------A--AATTAAAAGCAA--CCAACCAAGTGCACTCCGT----TTATGCCAAA----AA-CAAT-T-GCCTTACTAATCTT--------AGCT--ACTG----TA--CT----CT-----CT--T-CACAGAATTTAATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCGACGATCTT
droMoj3 scaffold_6496:23749341-23749567 - ---------------------------------------------------------------------------------------------------------------TTTATA--TGT----GTATTGTGCTT-TA---T-CTAAT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA--------TCGGTTT-TA-----AAT-----AGCCTCGAAA-----------TGAAA---------GA---AAAAATTGAAGGCAA--CCAACCAAGTGCACTCCCT-------TTA----TTCTATT-TATAA-GCTTTACT----------AATATTGCCGTT----------CTT-AAAT-----CT--T-CACAGAACTTAATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACAATCTT
droGri2 scaffold_15112:1168684-1168926 + --------------------------------------------------------------------------------------------------------------TTTTCTA--TAT----GTGTTGTGCTTTTA---T-CTAAT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA-------ATCGGTTC-TAAGT-TCC-------CTTTTGGGA-------------ATACTTT------C---A--AATCAAAAGCAA--CCAACCAAGTGCACCTGCCCTATTTTGAAACTA----AT-ATA--A-TCCATACTAATTTTGTCTT---ATACATTT-----------TCTATTT-----CC--T-CCCAGAACTTAATGTCCGAACTGGAAAAGCGTGAGATGCACTTTGCAACGATCCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACTGGGCTGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTG--GAGGCCTATGCC------CCAATG---A-ATCCCC--CACCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCA--GATTGGTTC-AT-----AAA-----TACCATGAG--------------AAATTTTCTACTGC---A--AAAAAAGAGCAA--CCAACCAAGTGCACTTATG-------AAA----TAGTTTT-AAT-A-TCGTTACT----------AATAAAACGTTT-----------TTAATGA-----CC--ACTACAGAACCTTATGTCCGAACTGGAGAAGCGCGAGATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGCGAGATGCA...............2712.00200000000000002000
........................................................................................................................................................................................................................................................................................................................................................................................................TATGTCCGAACTGGAGAAGCGCGAGAT..................2712.00201100000000000000
....................................................................................................................................................TT--TACAAGCGTGCATTTGGTA..........................................................................................................................................................................................................................................................................2111.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGAGAAGCGCGAGATGCA...............2411.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................CTTATGTCCGAACTGGAGAA...........................2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGCGAGATGC................2611.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAGAAGCGCGAGA...................1811.00100000000001000000
.......TGACAAACAACTCGATCTTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TACAGAACCTTATGTCCGAACTGGAGA............................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAACTGGAGAAGCGCGAGG...................2511.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTTATGTCCGAACTGGAGA............................2111.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCCGAACTGGAGAAGCGCGAGA...................2211.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGCGCGAGG...................2411.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGCGCGAGA...................2411.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGCGA.....................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAACTGGAGAAGC.........................2611.00100100000000000000
droSec2
ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTATGAGGTAAGTG--GAGGCCTATGCC------CCAATG---A-ATCCCC--CACCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCC-AGATTGGTTC-AT-----AAA-----TACCATGAG--------------AAATTTTCTACTGC---A--AAAAAAGAGCAT--CCAACCAAGTGCACTTATG-------AAA----TAGTTTT-AGT-A-TCGTTACT----------AATAAAACGTTT-----------TTAATGA-----CC--ACTACAGAACCTTATGTCCGAACTGGAGAAGCGCGAGATGCACTTTGCCACAATCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGAAGCGCGAGATGCAC..............2211.0010001
dm3
ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTG--GTGGCCTATGCCC-----CGAATG---A-ATCCCC--CCCCTTAGAGCTAGTGTTATA--TATGTGT-TGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCC-AGATTGGTTC-AT-----AAA-----TACCATGAG--------------AAATTTTCTATTGC---A--AAAAAAGAGCAA--CCAACCAAGTGCACTTATA-------AAA----AAATTTTTAAT-A-TCGTTACT----------TATAAAACGTTT-----------TTAATAA-----CC--ACTACAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................GTGCACAGATACTACGAG...................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACCTTATGTCCGAACTGGAGA............................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCCCTCCGTGCACAGATACTACGAG...................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCGATCTTCCCTCCGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATGTCCGAACTGGAGAAGCGTGAGA...................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
ACTGGGCGGACAAACAACTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCCCTCCGTGCACAGATACTACGAT...................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATGTCCGAACTGGAGAAGCGTGAGATGCA...............3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTCGATCTTCCCTCCGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATGCACTTTGCCACCATCC.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCCGAACTGGAGAAGCGTGAGATGCAC..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTCGATCTTCCCTCCGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGATGCACTTTGCCACC.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCGTGAGATGCACT.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCCGAACTGGAGAAGCGTGAGATGCA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CTTATGTCCGAACTGGAGAAG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................CCTTATGTCCGAACTGGAGAAGCGT.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTTCCCTCCGTGCACAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGGGCGGACAAACAACTCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTTCCCTCCGTGCACAGATACTACGAGA..................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAGAAGCGTGAGATGCACTT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAACTGGATC............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTTCCCTCCGTGCACAGATACT........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGTGAGA...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAGAAGCGTGAG....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................TCTTCCCTCCGTGCACAGATAC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGAACTGGAGAAGCGTG......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTTATGTCCGAACTGGAGAAGCG........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCACTTTGCCACCATCCT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGAAGCGTGAGATG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................ATGCCC-----CGAATG---A-ATCCCC--C....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACTCGATCTTCCCTCCGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAGCGTGAGATGC................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ATACTACGAGGTAAGTG--GT........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAGATGCACTTTGCCACC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTATGTCCGAACTGGAGAAGCGTGA.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............AACTCGATCTTCCCTCCGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGGGCGGACAAACAACTCGATCTTCCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGCGTGAGATGCACT.............3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GATCTTCCCTCCGTGCACAGATACTACG.....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAACAACTCGATCTTCCCTCCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGAACTGGAGAAGCGTGAGATG.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGTGA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAACTGGAGAAGCGT.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGCGTGAGAT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
...............AACTCGATCTTCCCTCCGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AACTCGATCTTCCCTCCGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTTATGTCCGAACTGGAGAAG..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAGAAGC.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAACTGGAGA............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AAACGTTT-----------TTAATAA-----CC--ACTACAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACACATACTACGAGGTAAGTT--TAGGCTTATGCC------CCAATG---A-A----TG--CCCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCAC-AAATTGGTTT-AC-----AAA-----TACCATGAG--------------AAATTTTCTATTGC---A--AAA-AAGAGCAA--CCAACCAAGTGCACTTATA-------AAA----TTCATTT-AAT-A-TCTTTACT----------AATAAAACCTTT-----------TTTATGA-----CC--A-TCTAGAACCTAATGTCCGAACTGGAAAAGCGTGAGATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAACTGGAAAAGCGT.......................2012.0021000010
...............................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAAAAGCGTGAGATGC................2212.0021000010
.......GGACAAACAACTCGATCTTCCCTC......................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAGATGCACTTTGCCACC.....2311.0010000001
........................................................................................................................................................................................................................................................................................................................................................................................................AATGTCCGAACTGGAAAAGC.........................2011.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAAAAGCGTGAGATGCA...............2311.0010000100
.................CTCGATCTTCCCTCCGTGCACACATAC.........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAAGCGTGAGATGCACT.............2211.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGAAAAGCGTGAGATGC................2311.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGTGAGATGCACTTTGCC........2211.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCGTGAGATGCACTTTGCCACC.....2711.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTAATGTCCGAACTGGAAAAGC.........................2611.0010000010
droYak3
ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAAGTACTACGAGGTAAGTG--GTGGCTTATGCC------CAAATG---A-A----TC--CCCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCAC-AAATTGGTTT-AC-----AAA-----TACCATGAA--------------AAATTTTCTTTTGC---A--AAA-ACAAGCAA--CCAACCAAGTGCACTTACA-------AAA----CCCTTTTGAAA-A-TCTTTACT----------AATAAAACCATT-----------TTTATGG-----CC--A-TCCAGAACCTAATGTCCGAACTGGAAAAGCGTGAGATGCATTTTGCCACCATCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......GGACAAACAACTCGATCTTCCCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000
......................................................................................................................................CTTCTA---T-CCGTT--TACAAG.......................................................................................................................................................................................................................................................................................1812.00220000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAAGCGTGAGATGCAT..............2111.00100000010000
...........AAACAACTCGATCTTCCCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAAAAGCGTGAGATGC................2211.00100010000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACCTAATGTCCGAACTGGAAAAGCGTGA.....................2911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTAATGTCCGAACTGGAAAAGC.........................2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGTGAGATGCATTTTGCCACC.....2611.00100100000000
............AACAACTCGATCTTCCCTCCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGAAAAGCGTGAGATG.................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAAAAGCGTGA.....................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAACTGGAAAAGCGTGA.....................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGATGCATTTTGCCACCATC..2411.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAAAAGCGTGAGATGCATTTTGC.........2911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGAACTGGAAAAGCGTGA.....................1911.00100000010000
.......GGACAAACAACTCGATCTTCCCTCCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAAAAGCGTGAGA...................1811.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTAATGTCCGAACTGGAAAAGCGT.......................2811.00100000010000
droEug1
ACTGGGCGGACAAACAACTCGATCTACCCTCCGTGCACAGATACTATGAGGTAAGTG--ATGGCCATGGCCATGACCATGTTG---C-A----TC--CACCTAGAGCTAGTTTGATA--TATGTATGTGTTGTGCTTCTA---T-CCGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCCC--GATTGGTTA-CT-----AAA-----TACCATGATT-------------AAAGTTTCTAATAC---A--AAAAAAGAGCAA--CCAACCAAGTGCACTTCTT------CGAT----TCCTGTT-AATAT-AA----------CTTACTAATTTG---TATT----------TTAATAA----CTTCCACAACAGAACCTTATGTCCGAACTGGAGAAGCGTGAAATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotal
No Reads
droBia1
ACTGGGCGGACAAACAACTCGACCTGCCCTCCGTGCACAGATATTACGAGGTAAATA--GTGGCCA-------------GTAT---A-T----C--CATAATAGAGCTAGTATTATA--TAT----GTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCAC--AATTGGTTC-TC-----AAA-----TACCATTGT--------------AAAATGTACATTTC---A--AA--AAAAGCAT--CCCACCAAGTGCACTATTC-------GAA----TACGTTT-AATAA-AT----------CTAACTAATTGA---AATTG----------GTATGA----TTC--C-CCCAGAACCTTATGTCTGAGCTGGAAAAGCGTGAGATGCACTTTGCAACTATTCTSizeHit CountTotal NormTotal
No Reads
droTak1
ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--ATGGCATTCGCC------GGGTAA---A-A----TC--CTCTTAGAGCTAGTTTTATATATAT----GTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAA---------------------------A-----TACCAATTG--------------AAAATTTATATTAC---A--AA--AAGAGCAA--CCAACCAAGTGCACTACTC-------GAA----TATGTTT-AATAT-AG----------TTAACTAATTAACT--ATTG------------ATA------TC--C-TTTAGAACCTCATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATTCTSizeHit CountTotal NormTotal
No Reads
droEle1
ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTG--ATAACGGTCGCC--------GTAG---AGA----TT--CTCGTAGAGCTAGTTTTATA--TATGTGTGTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATTTT--GATTGGTTT-AT-----AAA-----TAGCAA-AG--------------AAATTTTCTATTAC---A--AAA-GAGAGCAA--CCAACCAAGTGCACTACTC-------GAC----AACTTTT-TATAA-CA----------CTTTCTAATTAA---TATTG----------CGTTAA----TTC--C-CCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotal
No Reads
droRho1
ACTGGGCGGACAAACAACTCGATCTTCCCTCCGTGCACAGATACTACGAGGTAAGTT--ATGACGGTCGC--------GGTTG---AGA----TA--CTCTTAGAGCTAGTTTTATA--TAT----GTGTTGTGCTTCTA---T----TT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATTCC--GATTGGTTG-AT-----AAA-----TACCAAAAG--------------AAATTGTATATTAC---A--AAA-AAGAGCAA--CCAACCAAGTGCACTACTC-------GAA----TTCTTTT-GATAC-AA----------CTGTCTGATTAA---TTTTC----------TGTTGA----TTC--C-CCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATACTSizeHit CountTotal NormTotal
No Reads
droFic1
ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATATTACGAGGTAAGTT--TTAGCAGTCGAA--------ATAGAGTA-A----AC--CCCCTAGTGCTAGTTTTATACATAT----GTGTTGTGCTTCTA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCCC--GATTGGTTC-AA-----AAA--AAGTACCAAGAGA-------------AATTTTTCTATTAT---A--AAA-AAGAGCAA--CCAACCAAGTGCACTATTT-------GAT----TATTTTT-TATAA-GT----------TTAACTAATTGA---TATTT----------TGTTGA----TAC--C-CACAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCTTSizeHit CountTotal NormTotal
No Reads
droKik1
ACTGGGCGGACAAGCAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTGCGACGGCAT---CC------CTCTTG---AAA----CC--CGTCTAGAGCTAGTTTTACATATTT----GTGTTGTGCTTCCA---T-CCGAT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGAGATC-CAATTGGTTTCGT----TAAA-----TGCCAAGAGA-----------T-AAATTTTCTATTTCCGAA--AAAAGAGAGCAAATCCAACCAAGTGCACTTCCT-------AGG----TACTGTT-TTC----------TATAGCTTTCTAATGCA---TTTTT-------CCCCAATTC-----CC--G-CACAGAACCTTATGTCCGAGCTGGAGAAGCGTGAAATGCACTTCGCCACCATTCTSizeHit CountTotal NormTotal
No Reads
droAna3
ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--GT----------------CCCTAG---AT------GCTAGCCTAGTAATAGCTTCCAA--TAC----GTGTTGTGCTTCTA---T-TTGTT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCCCAGATTGGTTA-T---------------CCTTTGAAACTACTTTGAAACAAAATTATTTATTCT---T--TGAAAAATGCAA--CCAACCAAGTGCACTTAAG---AGTAGCTCATG---TTT--TAA-T-CCATTACT----------AATAAT---TATA----------TTCTTGA-----CC--C-TTTAGAACCTTATGTCCGAGCTGGAGAAGCGCGAGATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGAGATGCACTTTGCCACC.....2311.001010000
.......GGACAAACAACTCGATCTGCCCTCCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........AAACAACTCGATCTGCCCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......GGACAAACAACTCGATCTGCCCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAGCTGGAGAAGCGCGAGA...................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAGCTGGAGAA...........................2411.001010000
........GACAAACAACTCGATCTGCCCTCCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......GGACAAACAACTCGATCTGCCCTCCGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........AAACAACTCGATCTGCCCTCCGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGCGCGAGATGCACTTTGC.........2411.001010000
..................TCGATCTGCCCTCCGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AACCTTATGTCCGAGCTGG...............................1911.001100000
.....................................................................................................................................................................TTGGTAATGGCGACGAG...............................................................................................................................................................................................................................................................1711.001000100
......................................................................................................................................................................................................................................................................................................................................................................................................CTTATGTCCGAGCTGGAGA............................1911.001000010
..............CAACTCGATCTGCCCTCCGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAGCTGGAG.............................2211.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAGCGCGAGATGCACT.............2111.001000010
droBip1
ACTGGGCGGACAAGCAACTCGATCTGCCCTCCGTGCACAGATACTACGAGGTAAGTG--C----------C------CCATAG---AC------GCTAGCCTAGTAATAGTTTCCAA--TAC----GTGTTGTGCTTCTG---T-CTGTT--TACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGACCCA--GATTGGTTT-TT---CCAAA-----TACTCTGAA------------------------TTT----A--AAAAAATTGCAA--CCAACCAAGTGCACTTGCC-------AAG------CTTTC-AAG-ATTCCTTACT----------AATACT---CATG-------TCCTGTTTGG-----CC--C-TTTAGAACCTTATGTCCGAGCTGGAGAAGCGCGAGATGCACTTTGCCACCATCCTSizeHit CountTotal NormTotal
No Reads
dp5
ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--GCGG----GACTAGGACTCCTCAG---AGT----T--CACCTTAGAGCTAGTTTCATA--TGA----GTGTTGTGCTTCTA---TTCTGTTTCTGCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCAC--AATTGGTTT-AA-----AAA-----TTCAATGAAATTACATG------AAATT--C---------A--TCCGAAAAGCAACTCCAACCAAGTGCACTTCTG---TTTCGACCCTA----TT-TTAT-T-CCATCACT----------CACCAGAC--ACTGATTGTT--TT----------TTC--A-TCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......GGACAAACAACTCGATCTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................GATCTGCCCTCCGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................TCGATCTGCCCTCCGTGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTATGTCCGAACTGGAGAAG..........................2511.0010100000000
..............CAACTCGATCTGCCCTCCGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................CGATCTGCCCTCCGTGCACAGA............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGAACTGGAGAAGCGTGAGATGC................2411.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAACTGGAGAAGCGT.......................2111.0010100000000
.......GGACAAACAACTCGATCTGCCCTC......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
ACTGGGCGGACAAACAACTCGATCTGCCCTCCGTGCACAGATACTATGAGGTAAGTG--GCGG----GGCTAGGACTCCTCAG---AGT----T--CACCTTAGAGCTAGTTTCATA--TGA----GTGTTGTGCTTCTA---TTCTGTTTCTGCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGATCAC--AATTGGTTT-AA-----AAA-----TTCAATGAAATTACATG------AAATT--CATCCG-----------TAAAGCAACTCCAACCAAGTGCACTTCTG---TTTCGACCCTA----TT-TTAT-T-CCATCACT----------CACCAGAC--ACTGATTGTT--TT----------TTC--A-TCCAGAACCTTATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACCATCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................TCTGCCCTCCGTGCACAGATA..........................................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
........................................................................................................................................................................................................................................................................................................................................................................................................TATGTCCGAACTGGAGAAGC.........................2012.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................CTTATGTCCGAACTGGAGAAGC.........................2212.002200000
.......GGACAAACAACTCGATCTGCCCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
........GACAAACAACTCGATCTGCCCTC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........CAAACAACTCGATCTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAACTGGAGAAGC.........................1911.001100000
droWil2
ACTGGGCGGACAAACAACTCGATTTGCCCTCAGTGCACAGATACTATGAGGTAAGTA--T----------C--------TCTG---A-T----C--TTTCAT------AGATT--AA--TAA----GTGTTAAGTTTCTGAAAATTTATAATTACAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA--------TTGGAAA-TC-----AAATA---TTGAACGAA--------------AATTGTACAAAAGC---A--AAA-AAAAAAAA--CCAACCAAGTGCACTTTAA-TGATTTGTAGATA----AT-TTAT------ATGCT----------AATAAT---TTTA-------TACCGCTTGTCCATTTC--T-AACAGAACCTAATGTCCGAACTGGAAAAGCGTGAAATGCACTTTGCCACCATCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAAAAGCGTGA.....................2114.00400400
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAAAAGCGTGAAATG.................2512.00200200
...............................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAAAAGCGTGAAAT..................2012.00200200
.................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAAAAGCGTGAAATGC................2011.00100100
.........ACAAACAACTCGATTTGCCCTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAAATGCACTTTGCCACC.....2311.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGAAAAGCGTGAA....................1911.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGAAAAGCGTGAAATG.................2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCTAATGTCCGAACTGGAAAAGCGT.......................2811.00100100
...............AACTCGATTTGCCCTCAGTGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............CAACTCGATTTGCCCTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAAAAGCGTGAAATGCA...............2711.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................AACCTAATGTCCGAACTGGAAAAGCGT.......................2711.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTAATGTCCGAACTGGAAAAGCGTGA.....................2811.00100100
droVir3
---------------------------------------------------------------------------------------------------------------TTTTTA--TAT----GTGTTGTGCTT-TA---T-CTAAT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA--------TCGGTTC-TA-----AAT-----TCCCTCGGGA-------------ATATTTTC---------A--AATTAAAAGCAA--CCAACCAAGTGCACTCCGT----TTATGCCAAA----AA-CAAT-T-GCCTTACTAATCTT--------AGCT--ACTG----TA--CT----CT-----CT--T-CACAGAATTTAATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCGACGATCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTGAGATGCACTTTGCGAC......2415.005000000000000000000000000000000000000000000000000000000000000005
........................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTGAGATGCACTTTGCGAC......2313.003000000000000000010000000000000000000000000000000000000000000002
............................................................................................................................................................................................................................................................................................................................................................................................................TCCGAACTGGAGAAGCGTGAGATGCACT.............2813.003000000000000000000000000000000000000000000000000000000000000003
...........................................................................................................................................................................................................................................................................................................................................................CT--ACTG----TA--CT----CT-----CT--T-CACAG..................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TACTAATCTT--------AGCT--ACTG----TA--CT----CT-----CT--.........................................................2611.001000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTGAGATGCACTTTGCG........2211.001000000000001000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAATGTCCGAACTGGAGAAGCGTGA.....................2511.001000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAGCGTGAGATGC................1811.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGATGCACTTTGCGACGAT...1911.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAGATGCACTTTGCGAC......2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATGCACTTTGCGAC......1911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAGAAGCGTGAGA...................1811.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTGAGATGCACTTTG..........2011.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AATTTAATGTCCGAACTGGAGAAGC.........................2511.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGCGTGAGATGCACTTTGCGAC......2711.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGAGAAGCGTGAGATGCACTTT...........2811.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTAATGTCCGAACTGGAGAAGCGTGA.....................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AATGTCCGAACTGGAGAAG..........................1911.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TT--------AGCT--ACTG----TA--CT----CT-----CT--T-CACAG..................................................2411.001000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGATGCACTTTGCGAC......2011.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
---------------------------------------------------------------------------------------------------------------TTTATA--TGT----GTATTGTGCTT-TA---T-CTAAT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA--------TCGGTTT-TA-----AAT-----AGCCTCGAAA-----------TGAAA---------GA---AAAAATTGAAGGCAA--CCAACCAAGTGCACTCCCT-------TTA----TTCTATT-TATAA-GCTTTACT----------AATATTGCCGTT----------CTT-AAAT-----CT--T-CACAGAACTTAATGTCCGAACTGGAGAAGCGTGAGATGCACTTTGCCACAATCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................ACTTAATGTCCGAACTGGAGAAGCGT.......................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAACTGGAGAAGCGTGA.....................2111.001000001
droGri2
--------------------------------------------------------------------------------------------------------------TTTTCTA--TAT----GTGTTGTGCTTTTA---T-CTAAT--TCCAAGCGTGCATTTGGTAATGGCGACGAGGTAAGA-------ATCGGTTC-TAAGT-TCC-------CTTTTGGGA-------------ATACTTT------C---A--AATCAAAAGCAA--CCAACCAAGTGCACCTGCCCTATTTTGAAACTA----AT-ATA--A-TCCATACTAATTTTGTCTT---ATACATTT-----------TCTATTT-----CC--T-CCCAGAACTTAATGTCCGAACTGGAAAAGCGTGAGATGCACTTTGCAACGATCCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:48 PM