ID:

dsi_26861

Coordinate:

3l:15987196-15987267 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_15986838_15987195_-]; CDS [3l_15986838_15987195_-]; CDS [3l_15987268_15987803_-]; exon [3l_15987268_15987803_-]; intron [3l_15987196_15987267_-]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################------------------------------------------------------------------------################################################## TCTGTCCTGCCATCTACGACATCAATCTGGCCTTCAAGAAGAATGCCGAGGTGAGAACTTAAGATCTCATATAAATATATATAAATTTTAATTTACATTTTGCAACTTGAATTGATTTACAGCCTAAGCCCACCATGCTGTCCCAGTTGAACGGCGAGCCCGTGGAACCGTA ************************************************.......((...(((((((............(((((....)))))............)))...))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
.......................................................................................................................................TGCGGTACCAGTTGAACGGCGC...............	22	3	1	2.00	2	0	0	0	0	2	0	0	0
..........CATCTACGACATCAATCTGGCC............................................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0
...........ATCTACGACATCAATCTGGCCT...........................................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0
..................................................................................................................................................TTGAACGGCGAGCCCGTGG.......	19	0	1	2.00	2	2	0	0	0	0	0	0	0
...........................TGGCCTTCAAGAAGAATGCCGAGC.........................................................................................................................	24	1	1	1.00	1	0	0	1	0	0	0	0	0
..............................................................................................................................................CCTGTTGAACGGCGAAACCGTGG.......	23	3	1	1.00	1	0	0	0	0	0	0	1	0
......................................................................................................................CGAGCCTAAGCCCACCATGCT.................................	21	2	1	1.00	1	0	0	0	1	0	0	0	0
..............TACGACATCAATCTGGCCTTCAAGA.....................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0
.............CTACGACATCAATCTGGCCTTCAA.......................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
........................ATCTGGCCTTCAAGAAGAATGCCGA...........................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0
.....................................................................................................................................CATGCTGTCCCAGTTGAACGGCGAGCCC...........	28	0	1	1.00	1	1	0	0	0	0	0	0	0
.................................................................................................................................................GTTGAACGGCGAGCCCGTGGAAC....	23	0	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................................GTCCCAGTTGAACGGCGAGCCCGTGGAA.....	28	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................CTGCCGTTCAAGAAGCATGCCG............................................................................................................................	22	3	1	1.00	1	0	0	0	1	0	0	0	0
.............CTACGACATCAATCTGGCC............................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................CCAGTTGAACGGCGAGCCCGTGGAAC....	26	0	1	1.00	1	0	0	1	0	0	0	0	0
.................GACATCAATCTGGCCTTCAAGAAGA..................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0
...............ACGACATCAATCTGGCCT...........................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................CTAAGCCCACCATGCTGTCCCAGTTGAAC....................	29	0	1	1.00	1	0	0	0	1	0	0	0	0
.......................................AGAATGCGTAGGTGAGGAC..................................................................................................................	19	3	8	0.13	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

AGACAGGACGGTAGATGCTGTAGTTAGACCGGAAGTTCTTCTTACGGCTCCACTCTTGAATTCTAGAGTATATTTATATATATTTAAAATTAAATGTAAAACGTTGAACTTAACTAAATGTCGGATTCGGGTGGTACGACAGGGTCAACTTGCCGCTCGGGCACCTTGGCAT ************************************************.......((...(((((((............(((((....)))))............)))...))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553487 NRT_0-2 hours eggs
..................................................................................................................................CTGGTACGACAGGGTCA.........................	17	1	1	1.00	1	1	0	0	0	0
...............TGCTGTAGTTAGACCGGAAGTTCTTCT..................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
...........................................ACGGCTCCTCTCTTGAA................................................................................................................	17	1	1	1.00	1	0	1	0	0	0
............................................CGGCTCCTCTCTTGAA................................................................................................................	16	1	2	0.50	1	0	1	0	0	0
AGACAGTACGGTAGA.............................................................................................................................................................	15	1	8	0.13	1	1	0	0	0	0
.....................................CTTCTTACGGCTACA........................................................................................................................	15	1	19	0.05	1	0	1	0	0	0
................................................................AGATTATATTTATATAAATTTAAT....................................................................................	24	3	19	0.05	1	0	0	1	0	0
...........................GCCGGAATTGCTTCTTAC...............................................................................................................................	18	3	20	0.05	1	0	0	0	1	0
................................................................AGACTATATTTATTTATATTT.......................................................................................	21	2	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 12:17 AM