ID:

dsi_26841

 Coordinate:

2r:5738879-5739165 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCCCGAGGAGATGGGCCTGCTGCTACTGGTGCTGATAGCGGGCATTGGCGTAAGCACTGTACCGATTAAATAATCTATGGGTCCGCAAAGATCCCACAAAAAGATGAGGTCTTTAGACAACTTTAAATCATAAAACTTTTGCGTGTTTGAAATATGTTTCATTTGGATGCGTGTCAGTTTGTATATAGTTTGTGGATACTTTAAACTTCAATTGTGGTTTTAGTACGAGACTAAAGAGACTTAGAAGACTCAGACTATACGAAGTCTTTGATAACAAAAATATTGAAAGTGAATTTGGTACTTATAATTGATTACTATGTTTGCAATACATTTTAGTGCGCAACTGCAGCAGCCAACATTGACCTGGAGGCCAAGACGTTTGTGAA
**************************************************(((((((..(((.((((((....((((.((......)).)))).(((((((........(((....)))..............(((((..((((((((((((..........))))))))))))..)))))........))))))).((((..(((((........))))).)))).(((((((((...((((.((((((((.........)).)))))).....(((.....))).))))...)))))).))).))))))..)))..)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR553486
Makindu_3 day-old ovaries
..CCCGAGGAGATGGGCCTG............................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0
.TCCCGAGGAGATGGGCCTGCTG............................................................................................................................................................................................................................................................................................................................................................................ 22 0 1 3.00 3 1 2 0 0 0 0 0 0
..........................................GCATTGGCGTAAGCACTG....................................................................................................................................................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0
.TCCCGAGGAGATGGGCCTGCGG............................................................................................................................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................GAAAGGGAATACGGTACTTAT................................................................................. 21 3 2 1.00 2 0 0 2 0 0 0 0 0
..CCCGAGGAGATGGGCCTGCTG............................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
TTCCCGAGGAGATGGGCCTG............................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CTAAAGAGCCGTTGAAGACT........................................................................................................................................ 20 3 7 0.57 4 0 0 0 0 4 0 0 0
..............................................................................................................................................................................................................................................................................................AAAGGGAATACGGTACTTAT................................................................................. 20 3 8 0.50 4 0 0 4 0 0 0 0 0
......................................................................................CACAGATCCCACAAAA............................................................................................................................................................................................................................................................................................. 16 1 6 0.33 2 0 0 0 2 0 0 0 0
......................................................................................CACAGATCCCACAAAAA............................................................................................................................................................................................................................................................................................ 17 1 3 0.33 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................AAAGGGAATACGGTACTTA.................................................................................. 19 3 20 0.20 4 0 0 4 0 0 0 0 0
..........................................................TGTAGCGATTAAATA.......................................................................................................................................................................................................................................................................................................................... 15 1 18 0.17 3 0 0 0 0 0 3 0 0
................................................................................................................................................................CAGTTGGACGCGGGTCAGT................................................................................................................................................................................................................ 19 3 20 0.15 3 0 0 0 0 0 0 3 0
...............................................................................................................................................................TCAGTTGGACGCGGGTCAGT................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................TAAAGAGCCTTTGAAGACTA....................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................TTTGGTACTTATCATT............................................................................. 16 1 9 0.11 1 0 0 0 0 0 0 0 1
....................................................ACGCACTGGACCGATTA.............................................................................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................TGCTCTTAGTACGAGA............................................................................................................................................................ 16 2 20 0.10 2 0 0 0 2 0 0 0 0
.........................................................................................................CGAGATCTTTAGACATCTTT...................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................GGTTGGTTTTAGTACGAGA............................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................CTGTAGGCCAAGACCT....... 16 2 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

AAGGGCTCCTCTACCCGGACGACGATGACCACGACTATCGCCCGTAACCGCATTCGTGACATGGCTAATTTATTAGATACCCAGGCGTTTCTAGGGTGTTTTTCTACTCCAGAAATCTGTTGAAATTTAGTATTTTGAAAACGCACAAACTTTATACAAAGTAAACCTACGCACAGTCAAACATATATCAAACACCTATGAAATTTGAAGTTAACACCAAAATCATGCTCTGATTTCTCTGAATCTTCTGAGTCTGATATGCTTCAGAAACTATTGTTTTTATAACTTTCACTTAAACCATGAATATTAACTAATGATACAAACGTTATGTAAAATCACGCGTTGACGTCGTCGGTTGTAACTGGACCTCCGGTTCTGCAAACACTT
**************************************************(((((((..(((.((((((....((((.((......)).)))).(((((((........(((....)))..............(((((..((((((((((((..........))))))))))))..)))))........))))))).((((..(((((........))))).)))).(((((((((...((((.((((((((.........)).)))))).....(((.....))).))))...)))))).))).))))))..)))..)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
..................................................CATTCGTGAGCTGGCTAAT.............................................................................................................................................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0
...........................ACCACGCCTATCTCCCTTAAC................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................................AGTTCTTATAACTTTCATTTAAA.......................................................................................... 23 3 5 0.20 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TGATACAAAGGTCATGTA....................................................... 18 2 8 0.13 1 0 0 1 0 0
................................................................................CCGGGCGTTGCTAGCGTGT................................................................................................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 1 0
.................................................................................................................................................................................................................................................................................CTGTTTTTATAACTTT.................................................................................................. 16 1 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 09:31 PM