ID:

dsi_26833

 Coordinate:

3l:11497357-11497409 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_11497145_11497356_-]; CDS [3l_11497145_11497356_-]; CDS [3l_11497410_11497707_-]; exon [3l_11497410_11497707_-]; intron [3l_11497357_11497409_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------##################################################
TTGGAAAATATCCGTACCAGCCGGCGGAAGCCTGCGATTTAGCTTCGCAGGTATATAATGATCCATTGATTTTATGTTACAGTACTAATTGCTTCACATATAGAATTCAACATGGGCTCGGAGAGCAATTGTGATCTGGATAATGTGCGATTT
**************************************************((((((((.((((....)))))))))).)).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
..........................................................................................................................GAGCAATTGTGATCTGGAT............ 19 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGAATTCAACATGGGCTC.................................. 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACATGGGCTCGGAGAGCAA......................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTCAACATGGGCTCGGAGAGC........................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGCAATTGTGATCTGGATAATGTGC..... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................AGAGCAATTGTGATCTGGATAATGTGC..... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................CAATTGTGATCTGGATAATG........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGCAATTGTGATCTGGAC............ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTCAACATGGGCTCGGA............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGCAGAATTCAACATGGGCTCGGAG.............................. 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TTGTGATCTGGATAATGTGCGATT. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................ATTGTGATCTGGATAATGTGC..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAGAATTCAACATGGGCTCGGAGAGCAA......................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................CTTCACATATGGAATTGAAC.......................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................ATTCAACATGGGCTCGGG............................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTGTGATCTGGATAATGTGCGATTT 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................GAATTCAACATGGGCTCGGAGAGC........................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................GAAAGCAATTGGGATCTGGAGA........... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................AATTGTGATCTGGATAATGTGCGAT.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGCTCGGAGAGCAATTGTGATCTGGA............. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................AATTGTGATCTGGATAATGT....... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
TTGGAAAATATCCGTACCAGCCGGCGGC............................................................................................................................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................ATGCAACATGGGCTAGAAGAGC........................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................AGATGGGCTAGAAGAGCAATT....................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................CAGTACTAATTGCTC........................................................... 15 1 10 0.20 2 0 0 0 1 0 0 0 0 0 1 0
................................................................................................................TGGGCTAGGAGAGCA.......................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................CCAGTACTAATTGCT............................................................ 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................TCACATATGGAATTGAAC.......................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................GATGGGCTAGAAGAGCAATT....................... 20 3 18 0.11 2 0 0 0 0 0 0 0 0 0 2 0
.................................................................................................................GGGCTAGAAGAGCAATT....................... 17 2 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
.........................................................................................................................AGAGCAATTGGGATCTGGAGAT.......... 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................TGGGCTAGAAGAGCAAT........................ 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................ATGGGCTAGAAGAGCAATC....................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACCTTTTATAGGCATGGTCGGCCGCCTTCGGACGCTAAATCGAAGCGTCCATATATTACTAGGTAACTAAAATACAATGTCATGATTAACGAAGTGTATATCTTAAGTTGTACCCGAGCCTCTCGTTAACACTAGACCTATTACACGCTAAA
**************************************************((((((((.((((....)))))))))).)).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.....TTTATAGGCAAGGCCGGCCGCCTT............................................................................................................................ 24 2 1 2.00 2 2 0 0 0 0 0
...................................................................CTTAACTACCATGTCATGATT................................................................. 21 3 2 0.50 1 0 1 0 0 0 0
....................................................................................................ATCTTAAGTTGTGCC...................................... 15 1 3 0.33 1 0 0 1 0 0 0
......................................................................................TTAACGATGTGTGTATCTT................................................ 19 2 3 0.33 1 0 0 0 1 0 0
................GGCCTGCCGGCTTCGGACG...................................................................................................................... 19 3 14 0.21 3 0 1 0 0 2 0
.............................................GGTTCCAAATATTACTAGG......................................................................................... 19 3 9 0.11 1 0 0 0 0 0 1
.........................................................................TACAATGTCATGACGAA............................................................... 17 2 19 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 10:22 AM