ID:

dsi_26775

Coordinate:

3r:4466264-4466413 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-25.7	-25.7	-25.6

Flybase annnotation

exon [3r_4466115_4466263_-]; CDS [3r_4466115_4466263_-]; intron [3r_4466264_4469295_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCTTTAATCTCTCTTTTTTATCTATTTCCCGTCACCACTTCGTTTGTATGCCACCACAAACTATGTCTGTCTAGTTATACCCTATTTTACTCCATCTAATCTTAAGATATTCCGTTGTGGGGATGTGGCTGCATGCAATACGGTGTTTACTAATCTAAATCATAATCAGTTGATTAACTATTTGATCACCTCCCTGGCAGACGATGAATTGGCAGCCAAAATCAAGGAGGTCGAGAAAAAACCCGTTCAG ************************************************.((((((((((((........)))))...((((((........((((.......))))........)))))).))))).))..(((.....((((.(((........(((((........))))).......))).))))......))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	M053 female body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.............................................................................................................................................................................................................................TCAAGGAGCTCGAGAAAAA..........	19	1	1	2.00	2	1	0	1	0	0	0	0	0
..........................................................................................................ATATTCCGTTGTGGGGATGTGG..........................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................................................................................GTGGCTGCATGCACTA..............................................................................................................	16	1	3	0.33	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................TCACCTCCCTGGCAGA.................................................	16	0	4	0.25	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................TCAAGGAGCTGGAGAAAAAA.........	20	2	6	0.17	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GGAGGTCGCGAATCAACCC......	19	3	9	0.11	1	0	0	0	1	0	0	0	0
.........................................................GAACTATGGCTGTCTAGTA..............................................................................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	1	0	0
............................................................CTATGTCTGTGTAGT...............................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................ATGAGGTCGAGAAACCACC.......	19	3	20	0.05	1	0	0	0	1	0	0	0	0
...................................................................................................................................CATTCTATACGGTGTT.......................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

CGAAATTAGAGAGAAAAAATAGATAAAGGGCAGTGGTGAAGCAAACATACGGTGGTGTTTGATACAGACAGATCAATATGGGATAAAATGAGGTAGATTAGAATTCTATAAGGCAACACCCCTACACCGACGTACGTTATGCCACAAATGATTAGATTTAGTATTAGTCAACTAATTGATAAACTAGTGGAGGGACCGTCTGCTACTTAACCGTCGGTTTTAGTTCCTCCAGCTCTTTTTTGGGCAAGTC ************************************************.((((((((((((........)))))...((((((........((((.......))))........)))))).))))).))..(((.....((((.(((........(((((........))))).......))).))))......))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
....................................................................................AAAATGAGGAAGGTTAGAATTGT...............................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0
.....................................................................................AAATGAGGAAGGTTAGAATTGT...............................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................AGGGACCGTCTGCTACTTTTC.......................................	21	2	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................AGATTTAATATTAGTCAGC..............................................................................	19	2	2	0.50	1	1	0	0	0	0
...................................................................................................AGAATTCTCTAAGACAACA....................................................................................................................................	19	2	4	0.25	1	0	0	1	0	0
...................................................................................................AGAATTCTCTAAGACAAC.....................................................................................................................................	18	2	6	0.17	1	1	0	0	0	0
.......................................................................................................................................................................................CTAGTCGAGGGACCGCCT.................................................	18	2	9	0.11	1	0	0	0	1	0
....................................................................................................GAATTCTCTAAGACAAC.....................................................................................................................................	17	2	19	0.11	2	1	0	0	0	1
..........................AGGGCACTGGTGCAGCAAC.............................................................................................................................................................................................................	19	3	17	0.06	1	0	1	0	0	0
.........GGAGACAAAATAGATAAA...............................................................................................................................................................................................................................	18	2	20	0.05	1	0	1	0	0	0

Generated: 04/24/2015 at 08:36 AM