ID:

dsi_26760

 Coordinate:

3r:17723972-17724040 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_17722582_17723971_+]; CDS [3r_17722582_17723971_+]; CDS [3r_17724041_17724197_+]; exon [3r_17724041_17724197_+]; intron [3r_17723972_17724040_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------##################################################
CGCCCGTCAGGCCCATCTCTACCGCGGCCTGGTGCCACTCATCTACAAGGGTAGGTTTTTGTTTCTCCAGGTCGTAAGGCGCAAGTTGTTTAAATTATAACTCTTGTTTGTACTTGCAGAGCCCGCTCTTGGTGACTGGCTGAAGGATGTGGACGTGCGCGTGCAGTTC
**************************************************.................(((((....(((((..((((((.......))))))..)))))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 M025
embryo
 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................TGAAGGATGTGGACGTGCGCGTGCAGT.. 27 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0
........................................................................................................................................TGGCTGAAGGATGTGGACGTGCGCG........ 25 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0
............................................................................................................................................TGAAGGATGTGGACGTGCGCGTGCAGTT. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGAAGGATGTGGACGTGCGTTA....... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGCTGAAGGATGTGGACGTGCGCGT....... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
.....................................................................................................................GGAGCCCGCTCTTGGTGACT................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................GTGACTGGCTGAAGGATGTGGAC............... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................GAGCCCGCTCTTGGTGACTG............................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................GCTGAAGGATGTGGACGTGCGCGTGCA.... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................GAGCCCGCTCTTGGTGACTGGCTGAAG........................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................TGACTGGCTGAAGGATGTGGATA.............. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................CTCTTGGTGACTGGCTGAAGGATGTGG................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................AAGGATGTGGACGTGCGTTT....... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GACTGGCTGAAGGATGTGGACGTGCGCGT....... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................GGCTGAAGGATGTGGACGTGCGCGT....... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CTTGGTGACTGGCTGAAGGA...................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................CTCTTGTTTGTACTTGCAGAGCCC............................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................ACTGGCTGAAGGATGTGGACGTGCG.......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TCTTGGTGACTGGCTGAAGG....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................GGCCTGGTGCCACTCATCTACAAGG....................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................TGACTGGCTGAAGGATGTGGAA............... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTGGCTGAAGGATGTGGACGTGCGCG........ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................GACTGGCTGAAGGATGTGGACGT............. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................TTGGTGACTGGCTGAAGGATGTGGACG.............. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................TGAAGGATGTGGACGTGCGCGTGCA.... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................TCTTGGTGACTGGCTGAAGGA...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TCTCTACCGTGGACTGGTGCCACTCAT............................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AGCCCGCTCTTGGTGACTGGCTGAAGG....................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................CTACCGTGGACTGGTGCC..................................................................................................................................... 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TTGTTTGTACTTGCAGAGCC.............................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................CTGGCTGAAGGATGTGGACGTGCGT......... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........CCCATCTCTACCGCGGCCTG.......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....GTCAGGCCCATCTCTACCGC................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................AAGGATGTGGACGTGCGCG........ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGAAGGATGTGGACGTGCGT......... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AAGGATGTGGACGTGCGCGTGC..... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................CTGGCTGAAGGATGTGGAA............... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AAGGATGTGGACGTGCGCGT....... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................ACTGGCTGAAGGATGTGGACGTGCGC......... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............CCATCTCTACCGCGGCCTGGTGCCACTC................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................AGGAGCCCGCTCTTGGTGAC................................. 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................AGGAGCCCGCTCTTGGTGACT................................ 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................AAGGAGCCCGCTCTTGGTGACT................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
..............................................................................GCGCAAGTTGTTTAG............................................................................ 15 1 10 0.20 2 0 0 0 0 0 0 0 2 0 0
..........GCCGAACTCTACCGCGACC............................................................................................................................................ 19 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................TGGTGACTGGGTGAA......................... 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................GGTGACTGGCTGAAGGAAAA................... 20 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0
...CCGCCAGGCCCATCGCTA.................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..............................................GAGGGTAGGTTTTTGA........................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGGGCAGTCCGGGTAGAGATGGCGCCGGACCACGGTGAGTAGATGTTCCCATCCAAAAACAAAGAGGTCCAGCATTCCGCGTTCAACAAATTTAATATTGAGAACAAACATGAACGTCTCGGGCGAGAACCACTGACCGACTTCCTACACCTGCACGCGCACGTCAAG
**************************************************.................(((((....(((((..((((((.......))))))..)))))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.....TTGTCCGGGTAGAGATGGCGC............................................................................................................................................... 21 2 1 2.00 2 2 0 0 0
......AGTCCGGGTAGAGATGGCGC............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
..................................................................GGTCCTGCATTCCCCGT...................................................................................... 17 2 7 0.14 1 0 0 1 0
..........................................................................................................................................................CGCGCGCACGTCAAG 15 1 9 0.11 1 0 1 0 0
.........................................................................................................................................................GCGCGCGCACGTCAGG 16 2 20 0.05 1 0 1 0 0
.................................................................CGGTCCAGTATTCCCCGT...................................................................................... 18 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 03:35 AM