ID:

dsi_26706

 Coordinate:

2r:12554346-12554495 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.7 -34.3 -34.3

Flybase annnotation

five_prime_UTR [2r_12554496_12554568_-]; exon [2r_12554496_12554568_-]; Antisense to exon [2r_12554431_12555840_+]; Antisense to five_prime_UTR [2r_12554431_12555273_+]; intron [2r_12553295_12554495_-]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGTTTACGTGTTAAAATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGTCGCCCGTCAATATACCCGCGTGTATGCACCCACAATTTCATTGAAAAGTGACGAGTACAACGGAAAACATGAGCAAATGAAATTTCGCACAGATCGTTCGGCTTGCTCCACGCACTTACACACACTTGCACTCGCTCACAAACACACACACACTCACACACTAAAATCACATATTCGCTGAATATT
**************************************************((((((((..((((.((.(((((((((((....)))))).......((((...)))).....))))).))...)))).......((((((.((((...((.....))...))))..))))))...................)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
............................................................................................................................CGGAAAACATGAGCAAATGAAAT....................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
.........TGTTAAAATTAATCGCAGGTCGTGAAGC..................................................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0
....................ATCGCAGGTCGTGAAGCTG................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
...................AATCGCAGGTCGTGAAGCG.................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................CGGAAAACATGAGCAAATGAAATTTC.................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................GTCGTGAAGCTGATTTAACTAAACTTC.................................................................................................................................................................................................... 27 3 1 1.00 1 0 0 0 0 0 0 1 0
..............AAATTAATCGCAGGTCGTGAAGCTGAT................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0
...........TTAAAATTAATCGCAGGTCGTGAAGC..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...................AATCGCAGGTCGTGAAGCT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0
.............AAAATTAATCGCAGG.............................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0
..................TAATCGCAGGTCGTGAAGCTG................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
TAGTTTACGTGTTAAAATTAATCGCA................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...................AATCGCAGGTCGTGAAGCTGATT................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...................AATCGAAGGTCGTGAAGCTGA.................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...........TTAAAATTAATCGCAGGTCA........................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1
...................................................TGCGTGCGCCCGTCGCCCGA................................................................................................................................................................................... 20 3 4 1.00 4 0 4 0 0 0 0 0 0
.....TACGTGTTAAAATTAATCGCAGGTCGTGA........................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0
TAGTTTACGTGTTAAAATTAATCGCAGG.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
..............AAATTAATCGCAGGTCGTGAAGCTGA.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...................AATCGCAGGTCGTGAAGCTGA.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........GTTAAAATTAATCGCAGGTC............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................CTAAAATCACATATTCGCTGA..... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
....................................................GCGTGCGCCCGTCGCCCGA................................................................................................................................................................................... 19 3 9 0.56 5 0 5 0 0 0 0 0 0
TGGTTTACGTGTTAAAA......................................................................................................................................................................................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................CCGCCTGTATGCACCATCAA....................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0
.....................................................CGTGCGCCCGTCGCCCG.................................................................................................................................................................................... 17 2 12 0.25 3 0 3 0 0 0 0 0 0
....................................................GCGTGCGCCCGTCGCCC..................................................................................................................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0
................................................................................CGCCTGTAGGCACCAACAA....................................................................................................................................................... 19 3 13 0.15 2 0 0 2 0 0 0 0 0
...............................................................................................................GTGAGGAATACATCGGAA......................................................................................................................... 18 3 20 0.15 3 0 1 1 1 0 0 0 0
................................................................................CGCCTGTAGGCACCCTCAA....................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

###################################################################################################################---------------------------------------------------------------------------------------------------------------------------------------
ATCAAATGCACAATTTTAATTAGCGTCCAGCACTTCGACTAAATTGATTTCACTCACGGGGGCAGCGGGCAGTTATATGGGCGCACATACGTGGGTGTTAAAGTAACTTTTCACTGCTCATGTTGCCTTTTGTACTCGTTTACTTTAAAGCGTGTCTAGCAAGCCGAACGAGGTGCGTGAATGTGTGTGAACGTGAGCGAGTGTTTGTGTGTGTGTGAGTGTGTGATTTTAGTGTATAAGCGACTTATAA
**************************************************((((((((..((((.((.(((((((((((....)))))).......((((...)))).....))))).))...)))).......((((((.((((...((.....))...))))..))))))...................)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................GTCTCAAGCAAGCTGAACG................................................................................ 19 3 20 8.70 174 143 0 28 3 0 0 0
...........................................................................................................................................................................GGTGCGTGAATGTGTGTGAA........................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................CGTGAGCGAGTGTTTGTGTGT...................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................TTTTCACTGCTCATGTTGCCT.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................................................................................GTCTAGCAAGCCGAACGAGGT............................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0
...............................................................................................................AACTGCTCATGTTGCCTTTTGT..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................GGCAGCGGGCAGATA............................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 1
..........CCATTTTAATCAGCGGCC.............................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12554296-12554545 - dsi_26706 TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGTCGCCCG------TCAA-T--ATAC-------------------------CCG--CG-TGTATG---------------CACCCACA--AT-TTCATT---G----------------AAAAGTGACGAG--TACAACGGAAAACATGAGCAAATGAAATTTCGCACAGATCGTTCGGC-------TTGCTCCAC-G--CA----CTTACACACACTTGCAC-------------TCGCTCA------C---AAACACACACACA------CTCACA------CACTAAAATCACA----TATTCGCTGAATATT
droSec2 scaffold_1:9387399-9387648 - TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGTCGCCCG------TCAA-T--ATAC-------------------------CCG--CG-TATATA---------------CACCCACA--AT-TTCATT---G----------------AAAAGTGACGAG--TACAACGGAAAACATGACCAAATGAAATTTCGCACAGATCGTTCGGC-------TTGCTCCAC-G--CA----CTTACACACACTTGCAT-------------TCGCTCA------C---AAACACACACACA------CTCACA------CACTAAAATCACA----TATTCGCTGAATATT
dm3 chr2R:11888495-11888742 - TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCTCTCGTCGCCCG------TTAA-T--ATAC-------------------------CCG--CG-TATATA---------------CACCCACA--AT-TTCATT---G----------------AATAGTGACGAG--TACAAAGGAAAACATGACCAAATGAAATTTCGCACAGATCGTTCGGC-------TTGCTCCAC-G--CA----CTTACACTCAC------ACACAC---------ACACA------C---ACACACACACACA------CACACA------CACTATAATCACA----TATTCGCTGAATATT
droEre2 scaffold_4845:13970762-13971004 + TAGTTTACGTGTTGAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACAAAAGTGAGTGCCCACGTTCCCCG------TTAT-G--ATAG-------------------------CCG--CG-TATAAT-C-------------AACACCCA--AT-TTCAAT---G----------------AAAAGTGACGAC--TACAGTGGAAAACATGAGCAGAAGAAATTTCGCACAGATCGCTCGGC-------TTGCTTCAC-G--CA----CTCA--A----------ACATAC-------------A------C---ACACACACACACA------CTCACA------CACTAAAATCACATGCATATCCGCTGAATATT
droYak3 2R:17094157-17094399 + TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGACCTCCG------TTAA-G--ATAC-------------------------CCG--CG-TATAAT-G-------------CACCCTCA--AT-TTAATT---G----------------AAAAGTGACGAG--TACAATGGAAAACATGAGCAGAAGAAATTTCGCACAGATCGCTCGGC-------TTGCTCCAC-G--CA----CTTACACACACATACAC-------------TCGCGCA------C---AAT--------CA------CACACA------CACTAAAATCACA----TATCCGCTGAATATT
droEug1 scf7180000409672:795272-795486 - TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAATTAAAGTGAGTGTCCCCGACT------------TAGGTAG----------------------TCCTCCGTGG--C-TATATC---------------CGTCGTGTGAAT-TTAAAAAAAG----------------A---AGAGTTGG--GGCAGCAGAAAACATGACCAGAAGAGATTTCGCACAGATCGCTCCGC-------TTGCTA---------TACA------A----------ACACAC--GC----------------------------ATACATA-T---C-----------------AACACA----TTTTCG--CAGTCTT
droBia1 scf7180000302292:2064656-2064868 - TAGTTTACGTGTTAAT-AATAATCGCAGGTCGTGACGCTGAGATAATTAAAGTGAGTGTCCAGGATGTCAA------CGGC-C--TTGC-------------------------CGCCGCC-TGC------------------CACCCACC--GAACTGATC---G----------------AA-AACGATCGG--AGGGCGGGAAAACATGGCCAGAAGAGTTTTCGCACAGATCGCTGCGC-------CTGCTA---------CTCG------A----------AAACAC--AC----------------------------ATACACA-CGC-A-------------------CGC-----GATTCGCACAATCTT
droTak1 scf7180000415795:675902-676102 + TAGTTTGCGTGTTAAA-ATTAATCGCGGGTCGTGAAGCTGATATAATTAAAGTGAGTGCTTGAGAGGTCGA------CAAA-C--ATTC-------------------------CTG--GC-TATAAC---------------CCTTAACA-AAT-CTGAAC---G----------------AAGGAAGGAGAG--GGCGGCAGAAAACATGACCAGAAGAGA---------------TCGGC-------TTGCTA---------CGCA------A----------ACATAC--ACA----------------------------CACACG-C---A----CA-------------CACA----TATCCGCGCAATCTT
droEle1 scf7180000491107:890297-890510 - TAGTTTACGTGTTAAA-ATAAATCGCAGGTCGTG-AGCTGATATAATTAAAGTGAGTTTAAATCATATCTGAGATTAGC----------------------TCGGTAGTTCTTCATAC--T-TATATC---------------CACCCACT-AAT-CTGAGC---TAAAAT--------------AGTG--AAC--AACAGCAGAAAACATG-------------------AGATCGTTCGGC-------TTGCTA---------CTCA------A----------ACACGCACGCACA---------------T---AC----ACACAC------GCA-----------------CACA----TATCCGCTCAATATT
droRho1 scf7180000779911:211985-212188 + TAGTTTACGTGTTAAA-GTAAATCGCAGGTCGTG-TGCTGATATAAATAAAGTGAGTTTATATCATATCAGTTATTACC----------------------TCGGTAATCCTTCATAT--A-TATATC---------------CACCCCTT-TAT-CGGACC---TTTATT--------------AGTG--GAA--AACAGCAGAAAACATG---------------------ATCGTTCGGC-------CTGCTA---------TACA------A----------ACACAC--AC----------------------------ACACAC------ACA-----------------CACA----TATCCGCACAATATT
droFic1 scf7180000453948:1136178-1136391 - TAGTTTACGTGTTAAA-TTTAATCGCAGGTCGTGAAGCTGATATAATTAAAGTGAGTGCCTTCGACG----------TTAA-C--AAAG---------------------CCCTGTGG--C-TGCATC---------------TACCCTCT--AC-TTAATG---A----------------AGAACTGGCGGGAATGGCAAAAAAAACATGACAAGAAGAGACTTCGCAAAGATCGCCTGAG-------TTGCTA---------TACAACCG--A----------ACACAC----------------------------------ACAC---AC-A----TATGTATA--------------------ATCAAATCTT
droKik1 scf7180000302385:1116384-1116601 - -AGTTTACGTGTTTTA-ATTAATCAGTGGACGTGAAGCTGTTATAATTAAAGTGAGTCCTCCGGCT----------AACTTGATAA----------------------TCCCTCCCT-----------------------------------ACT-CTGTCC---GAGAAGCGTGCAACTCCACAGGTGTCAAG--GGCAGGGGAAAACATGACCAGTAGAGACTTGGCACAGATCGGTCGGC-------TTGCTA---------TGCA------C----------AAACACTCACG-------CA------T---ACC----------A------A----CA--CACA---------------C-AAGGCACAATCTT
droAna3 scaffold_13266:11837433-11837633 + TCGTTTACGTGTTTATTAGCAGTCACTGG-------------ACAAATAGAGTGAGTTTCCAGGCC-CCGA------GGAT-C--ATCC-------------------------CCT--AGTTGC-GACTCCCACGGGGTGGA----------GT-CGACGC---ACTGTC------------------------------------AGAGGGGAAACTGCGGTGTCGCGGTGATCTCTAGGC-------TGGGTTCTA-G--TACGCA------G----------GAACTC--ATA---------------CGATG--------TACAA-ATAC-A----TGTATTCA--------------------TCCAAATCTT
droBip1 scf7180000396547:634172-634375 - TCGTTTACGTGTTTATTAACAGTCACAGGAC-------------AAACAGAGTGAGTTACCAGGCTATCGA------GGAT-C--ATCC-------------------------CCC--ACTTGG-GACTCCCACGG-GTAGA----------GT-CGGCGC---ATTGTT------------------------------------AGATGCCCAACTGCAGTGTCAAAGTGATCTTTCGGC-------TTGGTTCTTCTAGTACGCA------G----------GAACAC--ATA---------------CAATG--------TACAA-GTAC-A----TGTACTCA--------------------TCTAAGTCTT
dp5 3:18942573-18942777 + TGGTTTACGTGTAAATTACTAACTAATATACGCGAAGTTGCTATAACTAAAGTGAGTGTACCC------CA------TCAGAATAATCCGGGACTGCTAAATCGGCAGTTATTAACA-------------------------------------------------------------CACTGCAAGTGCT-AT--TTGAAAGTAAAACATGGGTAACCAGAGTGACGT--AGATCT----------------------------CGCA------A----------ATGTAC--ACACA---------------TCGGGCGGGCAC----------G----CACTCACA---------------------TTGAATCTT
droPer2 scaffold_34:893317-893521 + TGGTTTACGTGTAAATTACTAACTAATATACGCGAAGTTGCTATAACTAAAGTGAGTGTACCC------CA------TCAGAATAATCCGGGACTGCTAAATCGGCAGTTATTAACA-------------------------------------------------------------CATTGCAAGTGCT-AT--TTGAAAGTAAAACATGGGTAACCAGAGTGACGT--AGATCT----------------------------CGCA------A----------ATGTAC--ACACA---------------TCGGGCGGGCAC----------G----CACTCACA---------------------TTGAATCTT
droVir3 scaffold_12855:4850106-4850230 + AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAAACATTT------GCAATATTGCATTGACCTTTTGTT---GAACTTAATTCCT-T--CA----CCTGCATGCAC------ACACAC-------TCATACA------C---ACACACACACACA------CACACA------AACTGAAACAAAA----TATTGTTTGCGAGTG
droGri2 scaffold_15110:14390353-14390466 - CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAATTAAAACGTGACACAAATTACTCGACTCT----TTGGGGCAC-A--CA----CTTACTCACACTTACAC-------------GCACGCACACACAC---ACT------CACAC-ACAC-A----CACACATACTAAAATTCCA------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGTCGCCCG------TCAA-T--ATAC-------------------------CCG--CG-TGTATG---------------CACCCACA--AT-TTCATT---G----------------AAAAGTGACGAG--TACAACGGAAAACATGAGCAAATGAAATTTCGCACAGATCGTTCGGC-------TTGCTCCAC-G--CA----CTTACACACACTTGCAC-------------TCGCTCA------C---AAACACACACACA------CTCACA------CACTAAAATCACA----TATTCGCTGAATATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................CGGAAAACATGAGCAAATGAAAT...........................................................................................................................................................2312.00220000000000000000
.........TGTTAAA-ATTAATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
.....................ATCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
....................AATCGCAGGTCGTGAAGCG....................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.........................................................................................................................................................................................................CGGAAAACATGAGCAAATGAAATTTC........................................................................................................................................................2611.00110000000000000000
..............AA-ATTAATCGCAGGTCGTGAAGCTGAT.................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...........TTAAA-ATTAATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
....................AATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.............AAA-ATTAATCGCAGG..............................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...................TAATCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
TAGTTTACGTGTTAAA-ATTAATCGCA................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
....................AATCGCAGGTCGTGAAGCTGATT................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
...........TTAAA-ATTAATCGCAGGTCA...........................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.....TACGTGTTAAA-ATTAATCGCAGGTCGTGA........................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
TAGTTTACGTGTTAAA-ATTAATCGCAGG..............................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..............AA-ATTAATCGCAGGTCGTGAAGCTGA..................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
....................AATCGCAGGTCGTGAAGCTGA..................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..........GTTAAA-ATTAATCGCAGGTC............................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CTAAAATCACA----TATTCGCTGA.....2111.00100000000010000000
droSec2
TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGTCGCCCG------TCAA-T--ATAC-------------------------CCG--CG-TATATA---------------CACCCACA--AT-TTCATT---G----------------AAAAGTGACGAG--TACAACGGAAAACATGACCAAATGAAATTTCGCACAGATCGTTCGGC-------TTGCTCCAC-G--CA----CTTACACACACTTGCAT-------------TCGCTCA------C---AAACACACACACA------CTCACA------CACTAAAATCACA----TATTCGCTGAATATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............A-ATTAATCGCAGGTCGTGAAGCTGA..................................................................................................................................................................................................................................................................................................................................................2511.0010100
...............................................................................................................................................................................................................................TTTCGCACAGATCGTTCGGC-------T................................................................................................................................2111.0010010
......................TCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............A-ATTAATCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................2411.0010100
.....................ATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................1811.0010001
.....................ATCGCAGGTCGTGAAGCTGAT.................................................................................................................................................................................................................................................................................................................................................2111.0010001
............................................AACTAAAGTGAGTGCCCCCG...........................................................................................................................................................................................................................................................................................................................2011.0010100
..................................................................................................................................................................................................................TGACCAAATGAAATTTCGCA.....................................................................................................................................................2011.0011000
.................ATTAATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCTCTCGTCGCCCG------TTAA-T--ATAC-------------------------CCG--CG-TATATA---------------CACCCACA--AT-TTCATT---G----------------AATAGTGACGAG--TACAAAGGAAAACATGACCAAATGAAATTTCGCACAGATCGTTCGGC-------TTGCTCCAC-G--CA----CTTACACTCAC------ACACAC---------ACACA------C---ACACACACACACA------CACACA------CACTATAATCACA----TATTCGCTGAATATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............A-ATTAATCGCAGGTCGTG.........................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000100000010000000000000000000000001000000000000000000000000000000000000000
....................AATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000000
....................AATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000
...................TAATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
.....................ATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100001000000000000000000000000000000000000000000
...............................GTGAAGCTGATTTAACTA..........................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCAGGTCGTGAAGCTGAT.................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000
......................TCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................CGTGAAGCTGATTTAACTAAAC.......................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATCGCAGGTCGTGAAGCTGAT.................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........GTGTTAAA-ATTAATCGCAGGTC............................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................A----CTTACACTCAC------ACACAC---------ACACA------C---ACACACACACA....................................................3522.0040000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A-ATTAATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................T---G----------------AATAGTGACGAG--TACAA..................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CAGATCGTTCGGC-------TTGCTCC..........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................ATTTCGCACAGATCGTTCGGC-------.................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TAAA-ATTAATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAATCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATTAATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................CGTCGCCCG------TTAA-T--ATAC-------------------------CCG--CG-.................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TT---G----------------AATAGTGACGAG--TACAAAGG...............................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAAATGAAATTTCGCACAGAT................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................ACAGATCGTTCGGC-------TTGCTCC..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................ATCGCAGGTCGTGAAGCTGA..................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................TCGTGAAGCTGATTTAACT...........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGTGAAGCTGATTTAACTAAA........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................AAATTTCGCACAGATCGTTCGGC-------.................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....................AATCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
TAGTTTACGTGTTAAA-ATTAATCGCA................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATCGCAGGTCGTGAAGCTGATTTAG.............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GTGACGAG--TACAAAGGAAAA...........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TCCAC-G--CA----CTTACACTCAC------AT...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGGTCGTGAAGCTGATTTAACTAAA........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................CGCAGGTCGTGAAGCTGA..................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.AGTTTACGTGTTAAA-ATTAATC...................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TGATTTAACTAAAGTGAGTGCTCTCG...........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............A-ATTAATCGCAGGTCGTGAAGCTGAT.................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................TTAACTAAAGTGAGTGCTCTCG...........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................GTGAAGCTGATTTAACTAAAC.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TATATA---------------CACCCACA--AT-TTCA...........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATCGCAGGTCGTGAAGCTGATTTAAC............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAAAGTGAGTGCTCTCGTCGC.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GATCGTTCGGC-------TTGCTCCAC-G--....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................GCTGATTTAACTAAAGTGAGT..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................AATCGCAGGTCGTGAAGCTGATT................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................CG------TTAA-T--ATAC-------------------------CCG--CG-TATA.............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................GTGAAGCTGATTTAACTAAAGT......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GAG--TACAAAGGAAAACATGACCA...................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AACTAAAGTGAGTGCTCTCG...........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................TTAATCGCAGGTCGTGAAGCTGAT.................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AGTGACGAG--TACAAAGGAAAACA.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................TAATCGCAGGTCGTGAAGCTGATT................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TAACTAAAGTGAGTGCTCTCG...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................TCGTGAAGCTGATTTAACTAAAGT......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGTGTTAAA-ATTAATCGCAGGTCGTGA........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AGATCGTTCGGC-------TTGCTCCA.........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............TAAA-ATTAATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TTTCGCACAGATCGTTCGGC-------TT...............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CCCG------TTAA-T--ATAC-------------------------CCG--CG-TA...............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................ATGACCAAATGAAATTTCGCA.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................G----------------AATAGTGACGAG--TACAAAG................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATCGCAGGTCGTGAAGCTGATTTAACT...........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CTTACACTCAC------ACACAC---------ACACA------C---ACACACACACAC...................................................3521.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTACACTCAC------ACACAC---------ACACA------C---ACACACACACACA------............................................3520.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACACTCAC------ACACAC---------ACACA------C---ACACACACACACA------CA..........................................3560.5030000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TACACTCAC------ACACAC---------ACACA------C---ACACACACACACA------C...........................................3530.3310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CACTCAC------ACACAC---------ACACA------C---ACACACACACACA------CAC.........................................3580.2520000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TACACTCAC------ACACAC---------ACACA------...................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TACACTCAC------ACACAC---------ACAC..........................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACACTCAC------ACACAC---------ACACA------C---ACACAC.........................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAGTTTACGTGTTGAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACAAAAGTGAGTGCCCACGTTCCCCG------TTAT-G--ATAG-------------------------CCG--CG-TATAAT-C-------------AACACCCA--AT-TTCAAT---G----------------AAAAGTGACGAC--TACAGTGGAAAACATGAGCAGAAGAAATTTCGCACAGATCGCTCGGC-------TTGCTTCAC-G--CA----CTCA--A----------ACATAC-------------A------C---ACACACACACACA------CTCACA------CACTAAAATCACATGCATATCCGCTGAATATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............A-ATTAATCGCAGGTCGTGAA.......................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............GAA-ATTAATCGCAGGTCGTGAAGCT....................................................................................................................................................................................................................................................................................................................................................2511.0010001000
....................AATCGCAGGTCGTGAAGC.....................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........TTGAA-ATTAATCGCAGGTCGTGAAGCTG...................................................................................................................................................................................................................................................................................................................................................2811.0010000100
droYak3
TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAACTAAAGTGAGTGCCCCCGACCTCCG------TTAA-G--ATAC-------------------------CCG--CG-TATAAT-G-------------CACCCTCA--AT-TTAATT---G----------------AAAAGTGACGAG--TACAATGGAAAACATGAGCAGAAGAAATTTCGCACAGATCGCTCGGC-------TTGCTCCAC-G--CA----CTTACACACACATACAC-------------TCGCGCA------C---AAT--------CA------CACACA------CACTAAAATCACA----TATCCGCTGAATATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................CGCAGGTCGTGAAGCTGATTTAACT...........................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............................CGTGAAGCTGATTTAACTAAAGTGAG...................................................................................................................................................................................................................................................................................................................................2611.00100010000000
droEug1
TAGTTTACGTGTTAAA-ATTAATCGCAGGTCGTGAAGCTGATTTAATTAAAGTGAGTGTCCCCGACT------------TAGGTAG----------------------TCCTCCGTGG--C-TATATC---------------CGTCGTGTGAAT-TTAAAAAAAG----------------A---AGAGTTGG--GGCAGCAGAAAACATGACCAGAAGAGATTTCGCACAGATCGCTCCGC-------TTGCTA---------TACA------A----------ACACAC--GC----------------------------ATACATA-T---C-----------------AACACA----TTTTCG--CAGTCTTSizeHit CountTotal NormTotal
No Reads
droBia1
TAGTTTACGTGTTAAT-AATAATCGCAGGTCGTGACGCTGAGATAATTAAAGTGAGTGTCCAGGATGTCAA------CGGC-C--TTGC-------------------------CGCCGCC-TGC------------------CACCCACC--GAACTGATC---G----------------AA-AACGATCGG--AGGGCGGGAAAACATGGCCAGAAGAGTTTTCGCACAGATCGCTGCGC-------CTGCTA---------CTCG------A----------AAACAC--AC----------------------------ATACACA-CGC-A-------------------CGC-----GATTCGCACAATCTTSizeHit CountTotal NormTotal
No Reads
droTak1
TAGTTTGCGTGTTAAA-ATTAATCGCGGGTCGTGAAGCTGATATAATTAAAGTGAGTGCTTGAGAGGTCGA------CAAA-C--ATTC-------------------------CTG--GC-TATAAC---------------CCTTAACA-AAT-CTGAAC---G----------------AAGGAAGGAGAG--GGCGGCAGAAAACATGACCAGAAGAGA---------------TCGGC-------TTGCTA---------CGCA------A----------ACATAC--ACA----------------------------CACACG-C---A----CA-------------CACA----TATCCGCGCAATCTTSizeHit CountTotal NormTotal
No Reads
droEle1
TAGTTTACGTGTTAAA-ATAAATCGCAGGTCGTG-AGCTGATATAATTAAAGTGAGTTTAAATCATATCTGAGATTAGC----------------------TCGGTAGTTCTTCATAC--T-TATATC---------------CACCCACT-AAT-CTGAGC---TAAAAT--------------AGTG--AAC--AACAGCAGAAAACATG-------------------AGATCGTTCGGC-------TTGCTA---------CTCA------A----------ACACGCACGCACA---------------T---AC----ACACAC------GCA-----------------CACA----TATCCGCTCAATATTSizeHit CountTotal NormTotal
No Reads
droRho1
TAGTTTACGTGTTAAA-GTAAATCGCAGGTCGTG-TGCTGATATAAATAAAGTGAGTTTATATCATATCAGTTATTACC----------------------TCGGTAATCCTTCATAT--A-TATATC---------------CACCCCTT-TAT-CGGACC---TTTATT--------------AGTG--GAA--AACAGCAGAAAACATG---------------------ATCGTTCGGC-------CTGCTA---------TACA------A----------ACACAC--AC----------------------------ACACAC------ACA-----------------CACA----TATCCGCACAATATTSizeHit CountTotal NormTotal
No Reads
droFic1
TAGTTTACGTGTTAAA-TTTAATCGCAGGTCGTGAAGCTGATATAATTAAAGTGAGTGCCTTCGACG----------TTAA-C--AAAG---------------------CCCTGTGG--C-TGCATC---------------TACCCTCT--AC-TTAATG---A----------------AGAACTGGCGGGAATGGCAAAAAAAACATGACAAGAAGAGACTTCGCAAAGATCGCCTGAG-------TTGCTA---------TACAACCG--A----------ACACAC----------------------------------ACAC---AC-A----TATGTATA--------------------ATCAAATCTTSizeHit CountTotal NormTotal
No Reads
droKik1
-AGTTTACGTGTTTTA-ATTAATCAGTGGACGTGAAGCTGTTATAATTAAAGTGAGTCCTCCGGCT----------AACTTGATAA----------------------TCCCTCCCT-----------------------------------ACT-CTGTCC---GAGAAGCGTGCAACTCCACAGGTGTCAAG--GGCAGGGGAAAACATGACCAGTAGAGACTTGGCACAGATCGGTCGGC-------TTGCTA---------TGCA------C----------AAACACTCACG-------CA------T---ACC----------A------A----CA--CACA---------------C-AAGGCACAATCTTSizeHit CountTotal NormTotal
No Reads
droAna3
TCGTTTACGTGTTTATTAGCAGTCACTGG-------------ACAAATAGAGTGAGTTTCCAGGCC-CCGA------GGAT-C--ATCC-------------------------CCT--AGTTGC-GACTCCCACGGGGTGGA----------GT-CGACGC---ACTGTC------------------------------------AGAGGGGAAACTGCGGTGTCGCGGTGATCTCTAGGC-------TGGGTTCTA-G--TACGCA------G----------GAACTC--ATA---------------CGATG--------TACAA-ATAC-A----TGTATTCA--------------------TCCAAATCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....TTACGTGTTTATTAGCAGTCACTG...............................................................................................................................................................................................................................................................................................................................................................2411.001000010
....TTACGTGTTTATTAGCAGTCACT................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
TCGTTTACGTGTTTATTAACAGTCACAGGAC-------------AAACAGAGTGAGTTACCAGGCTATCGA------GGAT-C--ATCC-------------------------CCC--ACTTGG-GACTCCCACGG-GTAGA----------GT-CGGCGC---ATTGTT------------------------------------AGATGCCCAACTGCAGTGTCAAAGTGATCTTTCGGC-------TTGGTTCTTCTAGTACGCA------G----------GAACAC--ATA---------------CAATG--------TACAA-GTAC-A----TGTACTCA--------------------TCTAAGTCTTSizeHit CountTotal NormTotal
No Reads
dp5
TGGTTTACGTGTAAATTACTAACTAATATACGCGAAGTTGCTATAACTAAAGTGAGTGTACCC------CA------TCAGAATAATCCGGGACTGCTAAATCGGCAGTTATTAACA-------------------------------------------------------------CACTGCAAGTGCT-AT--TTGAAAGTAAAACATGGGTAACCAGAGTGACGT--AGATCT----------------------------CGCA------A----------ATGTAC--ACACA---------------TCGGGCGGGCAC----------G----CACTCACA---------------------TTGAATCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................AACCAGAGTGACGT--AGATCT----------------------------C.................................................................................................................2113.0030000001020
.....................................TTGCTATAACTAAAGTGAGTG.................................................................................................................................................................................................................................................................................................................................2111.0011000000000
................................................................................................................................................................................................................................................................................................GTAC--ACACA---------------TCGGGCGGG........................................................1811.0010000010000
................................................................................................CTAAATCGGCAGTTATTAAC.......................................................................................................................................................................................................................................................................2011.0011000000000
droPer2
TGGTTTACGTGTAAATTACTAACTAATATACGCGAAGTTGCTATAACTAAAGTGAGTGTACCC------CA------TCAGAATAATCCGGGACTGCTAAATCGGCAGTTATTAACA-------------------------------------------------------------CATTGCAAGTGCT-AT--TTGAAAGTAAAACATGGGTAACCAGAGTGACGT--AGATCT----------------------------CGCA------A----------ATGTAC--ACACA---------------TCGGGCGGGCAC----------G----CACTCACA---------------------TTGAATCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............TTACTAACTAATATACGCGAAGTTG...................................................................................................................................................................................................................................................................................................................................................2511.001001000
...............................................................................................................................................................................................................................................................................................TGTAC--ACACA---------------TCGGGCGGG........................................................1911.001010000
droVir3
AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAAACATTT------GCAATATTGCATTGACCTTTTGTT---GAACTTAATTCCT-T--CA----CCTGCATGCAC------ACACAC-------TCATACA------C---ACACACACACACA------CACACA------AACTGAAACAAAA----TATTGTTTGCGAGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAATTAAAACGTGACACAAATTACTCGACTCT----TTGGGGCAC-A--CA----CTTACTCACACTTACAC-------------GCACGCACACACAC---ACT------CACAC-ACAC-A----CACACATACTAAAATTCCA------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:27 PM