dsi_26701

exon [x_5869934_5870050_-]; CDS [x_5869934_5870039_-]; CDS [x_5869508_5869866_-]; exon [x_5869096_5869866_-]; intron [x_5869867_5869933_-]

##################################################-------------------------------------------------------------------################################################## CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCCTCCAAACCCGATTGATCTACTCATATATGTGCTCGTAACTATATCAATCCCTTGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAACCGTTGGCCTGGGA ************************************************..........((((....(((((((.(((.(((....)))...))).....)))))))..))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M025 embryo	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs
..........................TGCCACCAAAGAGCTACTTCACAGGC...................................................................................................................	26	1	1	4.00	4	3	0	0	1	0	0	0	0
...................................................................................................................................................TGACAACCGTTGGCCTGGGT	20	1	1	2.00	2	0	0	0	0	2	0	0	0
....................................................................................................................................................GACAACCGTTGGCCTGGG.	18	0	1	2.00	2	0	0	2	0	0	0	0	0
..............................ACCAAAGAGCTACTTCACA......................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0
.............................................................................................................................................TGGTTGTGACAACCGTTGGCCTGGG.	25	0	1	1.00	1	0	0	0	1	0	0	0	0
..................................................................................................................CAGGCTTCACCACCATCGGCACC..............................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................................................GTGGTTGTGACAACCGTTGGCCTGGGA	27	0	1	1.00	1	0	0	0	1	0	0	0	0
.....AGAAGATCCCCTTTGCCCGCGTGCCA........................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................................................TTCACCACCATCGGCACCTATGTGGTTG....................	28	0	1	1.00	1	0	0	0	0	0	1	0	0
.............................................................................................................................................TGGTTGTGACAACCGTTGGCC.....	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................................ACAGGCTTCACCACCATCGGCT................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
..................................................................................................................................................GTGACAACCGTTGGCCTGGG.	20	0	1	1.00	1	0	1	0	0	0	0	0	0
...............................................................................................................................CATCGGCACCTATGTGGTTGTGAC................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................................TGTGGTTGTGACAACCGTTGGCCTGGGA	28	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................................TGGTTGTGACAACCGTTGGCCTGGGA	26	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................GGTTGTGACAACCGTTGGCCTGGGA	25	0	1	1.00	1	0	0	1	0	0	0	0	0
.............................................................................................................................................TGGTTGTGACAACCGGTGGCCTGGGA	26	1	1	1.00	1	0	0	0	1	0	0	0	0
......................CGCGTGCCACCAAAGAGCTACTTCA........................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0
.............................................................................................................................ACCATCGGCACCTATGTGGTTGTGAC................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................................................................................ATCGGCACCTATGTGGTTGTGAC................	23	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................TATACGAGCACGTAACTATA.................................................................	20	3	9	0.11	1	1	0	0	0	0	0	0	0
...............................................................................................................TGGCAGGCGTCTCCACC.......................................	17	2	17	0.06	1	0	0	0	0	0	1	0	0
.................................................GGTGATCTCCTCCTAA......................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

GATGTTCTTCTAGGGGAAACGGGCGCACGGTGGTTTCTCGATGAAGTGTCCACTCGAGGAGGTTTGGGCTAACTAGATGAGTATATACACGAGCATTGATATAGTTAGGGAACCGTCCGAAGTGGTGGTAGCCGTGGATACACCAACACTGTTGGCAACCGGACCCT ************************************************..........((((....(((((((.(((.(((....)))...))).....)))))))..))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M053 female body	M024 male body
...........................................................AGGTTTGGCCAAAATAGATGAGT.....................................................................................	23	3	1	1.00	1	1	0	0	0
...............................................GTTCACTTGAGGAGGTTTG.....................................................................................................	19	2	3	0.33	1	1	0	0	0
.....................................................................................................TAGTTAGGGAACCGTG..................................................	16	1	4	0.25	1	0	1	0	0
....................................................................................................................CAGAAGTGGTGGTCACCGTGG..............................	21	3	4	0.25	1	0	0	1	0
..........................................................................................................................TGGCGGTAGCCGTGGACA...........................	18	2	7	0.14	1	0	1	0	0
..........................................................................................................AGGGAACCCTCGGAAGT............................................	17	2	9	0.11	1	0	1	0	0
..............................................................................................................AACTGTCCGAAGTAGTAGTAG....................................	21	3	10	0.10	1	0	1	0	0
...................................TCTCGATGAGTTGTCCA...................................................................................................................	17	2	10	0.10	1	0	1	0	0
.........................................................................................................................GTGGTGGTAGACGAGGAT............................	18	2	16	0.06	1	0	1	0	0
.............................................................GTTTGGGCAAGCTAGGTGA.......................................................................................	19	3	17	0.06	1	0	0	0	1
......................GCGTATGGTGGTTTCT.................................................................................................................................	16	2	20	0.05	1	0	1	0	0
....................................................................................................................CGGAACTGCTGGTAGCCG.................................	18	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:5869817-5869983 -	dsi_26701	CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCC----TCCAA------ACCCG--ATTG--ATCT--------------------------------------------------------ACTC---------------A--TATATG----------------TGCTCGTAA------CTAT----A------------------------TC--AA--TC--CC---TTGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAACCGTTGGCCTGGGA
droSec2	scaffold_4:526369-526535 +		CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCATC----TCCAA------ACCCG--ATTG--ATCT--------------------------------------------------------ACTC---------------A--TATATG----------------TGCTCGTAA------CTAT----A------------------------TC--AA--TC--CC---TTGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAACCGTTGGCCTGGGA
dm3	chrX:6244038-6244204 -		CTACAAGAAGATACCCTTTGCCCGCGTGCCACCGAAGAGCTACTTCACAGGTGAGCTCC----TCCAA------ATCCC--ATTG--ATCT--------------------------------------------------------AACC---------------A--TATATG----------------TGCTGGTAA------CTAT----A------------------------TC--AA--TC--CC---TCGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAGCCGTTGGCCTGGGC
droEre2	scaffold_4690:15209298-15209471 -		CTACAAGAAGATCCCCTTTGCTCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCC-------AA------ACCCG---------------ATA-TCA----------------------------------------------AACCCATTGATCAGG----CTATATATG----------------TACTGGT-A------CTGT----A------------------------TT--AA--TC--CC---CCGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACCACCGTTGGCCTGGGA
droYak3	X:2238598-2238771 -		CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCC-------AA------ACCCG--AT----AT----------CA----------------------------------------------ACCCGATTAAAGCGT----ATTTATATG----------------TACTG-AAA------CTGT----A------------------------TC--AA--TC--CC---TCGGCAGGCTTTACCACCATCGGCACCTACGTGGTTGTGACGGCCGTTGGCCTGGGA
droEug1	scf7180000409033:578086-578248 -		CTACAAGAAGATCCCCTTTGCCCGCGTGCCGCCGAAGAGCTACTTTACAGGTGACTTATT-------T------A---------------TCCGATT-CTT----------------------------------------------TTATAGT--------CAGG--CTA----------------------------TATAT----------AT--------TCAAT----------CT--GA--AC--TC---TCTACAGGCTTCACCACGATCGGTGCCTATGTGGCTGTAACGGCCGTTGGCCTGGGA
droBia1	scf7180000301760:3139756-3139918 +		CTACAAGAAGATCCCCTTTGCCCGCGTGCCGCCCAAGAGCTACTTCACAGGTGAGCCAAA-------G--------C-------------AGGGATTAGCT----------------------------------------------GGAGCGC--------CGAG--CCA----------------------------CATGT----------ACTGACCC---------------------CC--GG--TG---TCCGCAGGCTTCACCATGATCGGCAGCTATGTGGCCGTGACGGCCGTCGGCCTGGGC
droTak1	scf7180000414745:52108-52271 -		CTACAAGAAGATCCCCTTCGCCCGCGTGCCGCCCAAGAGCTACTTCACAGGTGAGTTATA-------T-----GG---------------TGCAATA-TCT----------------------------------------------GTATAAT--------CAGG------------------CAA------------TATATAT-----------GTCCTATTCGA-----------------------TA---TGCAAAGGCTTCACCATGATCGGCAGCTATGTGGCCGTAACGGCCGTCGGCCTGGGA
droEle1	scf7180000490141:984951-985124 -		CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCGAAGAGCTACTTCACAGGTGAGCTTT-------AT------ATCCG--CTTT--ATCTGCGATA-TCT----------------------------------------------GTAGGTT--------CCCG------------------AGA------------TATATATGTAT----A------------------------TG--TG--TG--CC---CCGACAGGCTTCACCACAATCGGGACCTATGTGGCTGTTACGGCCGTTGGCCTGGGC
droRho1	scf7180000779986:760693-760854 +		CTACAAGAAGATCCCCTTTGCCCGCGTGCCGCCGAAGAGCTACTTCACAGGTGAGCCACG-------G---CTG-----------CTATATGCGATA-TCT----------------------------------------------GTGGGAT--------CCAG------------------T--------------T------GTAT----A------------------------TT--TA--TA--CC---CCGGCAGGCTTCACCACGATCGCGACCTATGTGGCCGTAACGACCGTGGGCCTGGGG
droFic1	scf7180000454072:1135243-1135404 +		CTACAAGAAGATCCCCTTTGCTCGTGTGCCACCCAAGAGCTACTTCACAGGTAAGCTATT-------T------C---------------CGCGATG-TCT----------------------------------------------GAGGGAT--------TCAG------------------TGG------------TACATAA------------------GCGAT----------ATG-A----A--CC---TTCACAGGCTTCACCACCATCGGAGCCTATGTGGTTGTAACGACCGTTGGCCTGGGC
droKik1	scf7180000302621:425335-425506 +		CTACAAGAAGATCCCCTTTGCCCGTGTGCCGCCCAAGAGCTACTTTACAGGTGAGTCCAG-----------CTG-----------GTGT----------C-CCCC-----------GAAACCTAGACCCCTTTCTGATCCTGGTTTA------------------------------------------------------------------TG------------------------TT--GCTTCT--CC---TTCGTAGGCTTCACCATGATTGGCACCTATGTGGCAGTGACTGCCGTGGGCCTGGGC
droAna3	scaffold_13335:2132142-2132300 +		CTACAAGAAGATTCCCTTCGCCCGTGTACCTCCCAAAAGCTATTTTACAGGTAAGGAACGTCTTT---------A---------------------------------------------------------------------------TCAC--------CCCC------------------AGATATGAAATA----------------------------------A-CCACGTATT--GT--AC--TC---TCCAAAGGCTTCACCATGATCGGCGCCTATGTGGCAGTGACAGCCGTGGGCCTGGGC
droBip1	scf7180000396362:15626-15799 -		CTACAAGAAGATTCCCTTCGCCCGTGTACCTCCCAAAAGCTATTTTACAGGTGAGGAAC-----------------CC----TTT--ATCT--------------------------------------------------------ATCT---------------A--TACACGGTCAACCGTAGATATGAAATA----------------------------------AACCACGTATT--GT--AC--TC---TTGCCAGGCTTCACCATGATTGGCGCCTATGTGGCAGTGACCACCGTGGGTCTGGGC
dp5	XL_group1a:6774083-6774254 +		CTACAAGAAGATTCCCTTCGCTCGTGTGCCTCCCAAGAGTTATTTCACAGGTGAGTGGGATCCTC---------GTCCCCTGCTC--GCCTGCG--------------------------------------------------------T---------------TACTATGTG----------------TATT------------------------------CGATAA-CC-----TT-TGC-TCC--CG---TGTGCAGGCTTCACCATGATTGGCACCTATGTGGCCGTCACCACTGTCGGCTTGGGT
droPer2	scaffold_25:535532-535701 -		CTACAAGAAGATTCCCTTCGCTCGTGTGCCTCCCAAGAGTTATTTCACAGGTGAGTGGA-TCCTC---------GTCCCCTGCTC--GCCTGCG--------------------------------------------------------T---------------TACTA--TG----------------TGCATT----------------------------CGATAA-CC-----TT--GC-TCC--CG---TGTACAGGCTTCACCATGATTGGCACCTATGTGGCCGTCACCACTGTCGGCTTGGGT
droWil2	scf2_1100000004515:1148257-1148356 +		CTACAAGAAGATTCCATTTTTACGTGTGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCATGATCGGTACCTATGTGGCGGTGACCGCTGTTGGTCTGGGC
droVir3	scaffold_12928:7535276-7535442 -		CTACAAGAAGATACCCTTTGCTCGTGTGCCGCCCAAGAGCTATTTCACAGGTGCATTCAA-------ACAGCTG-----------TTGT----------C-CATAATTATTAGCATTAAA----------------------------------------------------------------------------------------------ACTGATTC---------------------CA--TTTCTATGCAACGCAGGCTTCACCATGATTGGCACCTATGTGGCCGTCACCGCTGTCGGTCTGGGC
droMoj3	scaffold_6473:2499101-2499256 +		ATACAAGAAGATTCCCTTTGCTCGCGTGCCACCCAAGAGCTATTTCACTGGTGAGTTCAA-------T------C---------------TAAGATT-TAT----------------------------------------------GCATACG--------TAGA-------------------------------CAT------CTAT----A------------------------TT--TA--TA--CT---TTTGCAGGCTTTACCATGATTGGAGCCTATGTGGCCGTCACCACAGTGGGTCTGGGC
droGri2	scaffold_14853:9624389-9624569 +		ATACAAGAAGATCCCATTTGCCCGTGTGCCGCCTAAGAGCTATTTCACAGGTGCGTTAA----TAATA------ATGCA--CTTTCAATATACGAAT---------------------------------------------------------ATAAGCAT----ATATATATA----------------TATA----T------ATATATATA------------------------TA--AC--TA--TA---TACGCAGGCTTCACAATGATTGGCGCCTATGTGGCGGTGACCACGGTCGGCCTGGGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCC----TCCAA------ACCCG--ATTG--ATCT--------------------------------------------------------ACTC---------------A--TATATG----------------TGCTCGTAA------CTAT----A------------------------TC--AA--TC--CC---TTGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAACCGTTGGCCTGGGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................TGCCACCAAAGAGCTACTTCACAGGC.....................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGACAACCGTTGGCCTGGGT	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GACAACCGTTGGCCTGGG.	18	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACCAAAGAGCTACTTCACA........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGGTTGTGACAACCGTTGGCCTGGG.	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAGGCTTCACCACCATCGGCACC..............................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GTGGTTGTGACAACCGTTGGCCTGGGA	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....AGAAGATCCCCTTTGCCCGCGTGCCA..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................TTCACCACCATCGGCACCTATGTGGTTG....................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGGTTGTGACAACCGTTGGCC.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTGACAACCGTTGGCCTGGG.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CATCGGCACCTATGTGGTTGTGAC................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTGGTTGTGACAACCGTTGGCCTGGGA	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGGTTGTGACAACCGTTGGCCTGGGA	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GGTTGTGACAACCGTTGGCCTGGGA	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGCGTGCCACCAAAGAGCTACTTCA..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACCATCGGCACCTATGTGGTTGTGAC................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATCGGCACCTATGTGGTTGTGAC................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCATC----TCCAA------ACCCG--ATTG--ATCT--------------------------------------------------------ACTC---------------A--TATATG----------------TGCTCGTAA------CTAT----A------------------------TC--AA--TC--CC---TTGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAACCGTTGGCCTGGGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................................GACAACCGTTGGCCTGGGA	19	1	8.00	8	0	1	7	0
...................................................................................................................................................................................................................................................................................................TGTGACAACCGTTGGCCTGGGA	22	1	4.00	4	0	0	4	0
.............................CACCAAAGAGCTACTTCACAGG......................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0
....................................................................................................................................................................................................................................................................CAGGCTTCACCACCATCGGC.................................	20	1	2.00	2	2	0	0	0
...............CTTTGCCCGCGTGCCACCAAAGAG..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................GGTTGTGACAACCGTTGGCCTGGGA	25	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................CATCGGCACCTATGTGGTTGT...................	21	1	1.00	1	0	0	1	0
.....................................AGCTACTTCACAGGTGAG..................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............CTTTGCCCGCGTGCCACCAAAGAGC.................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................GTGACAACCGTTGGCCTGGG.	20	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................CCATCGGCACCTATGTGGTTGT...................	22	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................CATCGGCACCTATGTGGTTGTGA.................	23	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................GTGACAACCGTTGGCCTGGGA	21	1	1.00	1	0	0	1	0
......................CGCGTGCCACCAAAGAGCTACTT............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
.........GATCCCCTTTGCCCGCGTG.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................ACCATCGGCACCTATGTGGTTGTGAC................	26	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................TGTGGTTGTGACAACCGTTGGCCTG...	25	1	1.00	1	1	0	0	0

dm3

CTACAAGAAGATACCCTTTGCCCGCGTGCCACCGAAGAGCTACTTCACAGGTGAGCTCC----TCCAA------ATCCC--ATTG--ATCT--------------------------------------------------------AACC---------------A--TATATG----------------TGCTGGTAA------CTAT----A------------------------TC--AA--TC--CC---TCGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAGCCGTTGGCCTGGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................TGCCCGCGTGCCACCGAAGAGCTACT.............................................................................................................................................................................................................................................................................	26	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
...................GCCCGCGTGCCACCGAAG....................................................................................................................................................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTTGCCCGCGTGCCACCGAAGAGCTA...............................................................................................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................TGCCCGCGTGCCACCGAAGAGCTACTT............................................................................................................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTGACAGCCGTTGGCCTGGGC	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTTGCCCGCGTGCCACCGAAGAGC.................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................GCCCGCGTGCCACCGAAGAGCTA...............................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CGTGCCACCGAAGAGCTA...............................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................TGCCCGCGTGCCACCGAAGAGCTACTA............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGCCCGCGTGCCACCGAAGAGCTACTTG...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTCACCACCATCGGCACCTAT...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGCCACCGAAGAGCTACTTCACAG.......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GATACCCTTTGCCCGCGTGCCA..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGGCTTCACCACCATCGGC.................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACCCTTTGCCCGCGTGCCACCGAAGAGCT................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TACCCTTTGCCCGCGTGCCAC.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCACCATCGGCACCTA............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTACAAGAAGATCCCCTTTGCTCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCC-------AA------ACCCG---------------ATA-TCA----------------------------------------------AACCCATTGATCAGG----CTATATATG----------------TACTGGT-A------CTGT----A------------------------TT--AA--TC--CC---CCGGCAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACCACCGTTGGCCTGGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................TGCTCGCGTGCCACCAAAGAGCTACTTC...........................................................................................................................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	4
....................................................................................................................................................................................................................................................................................................GTGACCACCGTTGGCCTGGGA	21	1	2.00	2	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................................................................................TGTGACCACCGTTGGCCTGGGA	22	1	2.00	2	1	0	0	0	1	0	0
.........GATCCCCTTTGCTCGCGTGCC...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GGCACCTATGTGGTTGTGACCACCGTT.........	27	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GACCACCGTTGGCCTGGG.	18	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GGCACCTATGTGGTTGTGAC................	20	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCTTCACCACCATCGGCACCTATGTGGTT.....................	29	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................ACCATCGGCACCTATGTGGG......................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATCGGCACCTATGTGGTTGT...................	20	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CGGCACCTATGTGGTTGTGA.................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GGTTGTGACCACCGTTGGCCTGGG.	24	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CACCACCATCGGCACCTATGT.........................	21	1	1.00	1	0	0	0	0	1	0	0
..................TGCTCGCGTGCCACCAAAGAGC.................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCTTCACCACCATCGGCACCTA............................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................ACCACCATCGGCACCTATGTGG.......................	22	1	1.00	1	0	0	0	1	0	0	0
......GAAGATCCCCTTTGCTCGCGTGCC...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GTTGTGACCACCGTTGGCCTGGGA	24	1	1.00	1	1	0	0	0	0	0	0
...............CTTTGCTCGCGTGCCACCAAAGA...................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CCATCGGCACCTATGTGG.......................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CATCGGCACCTATGTGGTTGTGAC................	24	1	1.00	1	0	1	0	0	0	0	0
....AAGAAGATCCCCTTTGCTCG.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......................CGCGTGCCACCAAAGAGCTA...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.................TTGCTCGCGTGCCACCAAAGAG..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..ACAAGAAGATCCCCTTTGCTCGCGTGC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................TTGTGACCACCGTTGGCCTGGGA	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CTTCACCACCATCGGCACCTATGTGGT......................	27	1	1.00	1	0	0	0	0	0	1	0
.........................GTGCCACCAAAGAGCTACT.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................GTGGTTGTGACCACCGTTGGCCTGGGA	27	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ACCATCGGCACCTATGTGG.......................	19	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGACCACCGTTGGCCTGGGA	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACCATCGGCACCTATGTGGTTGTGAC................	26	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CATCGGCACCTATGTGGTTGT...................	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................TTCACCACCATCGGCACCTATGTGGT......................	26	1	1.00	1	1	0	0	0	0	0	0
..................TGCTCGCGTGCCACCAAAGA...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................GGTTGTGACCACCGTTGGCCT....	21	1	1.00	1	1	0	0	0	0	0	0
..............................ACCAAAGAGCTACTTCACA........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
......GAAGATCCCCTTTGCTCGCGTGCCACCA.......................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CACCATCGGCACCTATGTGGTTGTGAC................	27	1	1.00	1	1	0	0	0	0	0	0

droYak3

CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCAAAGAGCTACTTCACAGGTGAGCTCC-------AA------ACCCG--AT----AT----------CA----------------------------------------------ACCCGATTAAAGCGT----ATTTATATG----------------TACTG-AAA------CTGT----A------------------------TC--AA--TC--CC---TCGGCAGGCTTTACCACCATCGGCACCTACGTGGTTGTGACGGCCGTTGGCCTGGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................GGTTGTGACGGCCGTTGGCCTGGGA	25	1	3.00	3	0	1	1	0	0	0	0	0	0	0	1
.............................CACCAAAGAGCTACTTCACAGGC.....................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTGACGGCCGTTGGCCTGGGA	22	1	3.00	3	0	0	0	1	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................ACCATCGGCACCTACGTGGTTGTGAC................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GTTGTGACGGCCGTTGGCCTGGGA	24	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................ATCGGCACCTACGTGGTTGTGAC................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................CGCGTGCCACCAAAGAGCT................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.TACAAGAAGATCCCCTTTGCCCGCGTG.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................CAAAGAGCTACTTCACAGG......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........AGATCCCCTTTGCCCGCGTGC............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTACGTGGTTGTGACGGCC............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTGACGGCCGTTGGCCTGGGA	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................TGCCACCAAAGAGCTACTTC...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................CACCAAAGAGCTACTTCACAGG......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................CCATCGGCACCTACGTGGTTGTGAC................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTACGTGGTTGTGACGGC.............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................ACCAAAGAGCTACTTCACAGGC.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................GCTTTACCACCATCGGCACCTACGT.........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................CACCATCGGCACCTACGTGGT......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........AGATCCCCTTTGCCCGCGTGCCACCAAA.....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GGTTGTGACGGCCGTTGGCC.....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ACCTACGTGGTTGTGACGGCC............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CATCGGCACCTACGTGGTTGT...................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TACCACCATCGGCACCTACGT.........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GAAGATCCCCTTTGCCCGCGTGCCA..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAGGCTTTACCACCATCGGCACCTACGT.........................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GCACCTACGTGGTTGTGACGGCCGTTGG.......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................GACGGCCGTTGGCCTGGGA	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.TACAAGAAGATCCCCTTTGCCCGCGT..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................CACCAAAGAGCTACTTCACA........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................AAAGAGCTACTTCACAGGC.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CTACAAGAAGATCCCCTTTGCCCGCGTGCCGCCGAAGAGCTACTTTACAGGTGACTTATT-------T------A---------------TCCGATT-CTT----------------------------------------------TTATAGT--------CAGG--CTA----------------------------TATAT----------AT--------TCAAT----------CT--GA--AC--TC---TCTACAGGCTTCACCACGATCGGTGCCTATGTGGCTGTAACGGCCGTTGGCCTGGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTACAAGAAGATCCCCTTTGCCCGCGTGCCGCCCAAGAGCTACTTCACAGGTGAGCCAAA-------G--------C-------------AGGGATTAGCT----------------------------------------------GGAGCGC--------CGAG--CCA----------------------------CATGT----------ACTGACCC---------------------CC--GG--TG---TCCGCAGGCTTCACCATGATCGGCAGCTATGTGGCCGTGACGGCCGTCGGCCTGGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTACAAGAAGATCCCCTTCGCCCGCGTGCCGCCCAAGAGCTACTTCACAGGTGAGTTATA-------T-----GG---------------TGCAATA-TCT----------------------------------------------GTATAAT--------CAGG------------------CAA------------TATATAT-----------GTCCTATTCGA-----------------------TA---TGCAAAGGCTTCACCATGATCGGCAGCTATGTGGCCGTAACGGCCGTCGGCCTGGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTACAAGAAGATCCCCTTTGCCCGCGTGCCACCGAAGAGCTACTTCACAGGTGAGCTTT-------AT------ATCCG--CTTT--ATCTGCGATA-TCT----------------------------------------------GTAGGTT--------CCCG------------------AGA------------TATATATGTAT----A------------------------TG--TG--TG--CC---CCGACAGGCTTCACCACAATCGGGACCTATGTGGCTGTTACGGCCGTTGGCCTGGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTACAAGAAGATCCCCTTTGCCCGCGTGCCGCCGAAGAGCTACTTCACAGGTGAGCCACG-------G---CTG-----------CTATATGCGATA-TCT----------------------------------------------GTGGGAT--------CCAG------------------T--------------T------GTAT----A------------------------TT--TA--TA--CC---CCGGCAGGCTTCACCACGATCGCGACCTATGTGGCCGTAACGACCGTGGGCCTGGGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTACAAGAAGATCCCCTTTGCTCGTGTGCCACCCAAGAGCTACTTCACAGGTAAGCTATT-------T------C---------------CGCGATG-TCT----------------------------------------------GAGGGAT--------TCAG------------------TGG------------TACATAA------------------GCGAT----------ATG-A----A--CC---TTCACAGGCTTCACCACCATCGGAGCCTATGTGGTTGTAACGACCGTTGGCCTGGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTACAAGAAGATCCCCTTTGCCCGTGTGCCGCCCAAGAGCTACTTTACAGGTGAGTCCAG-----------CTG-----------GTGT----------C-CCCC-----------GAAACCTAGACCCCTTTCTGATCCTGGTTTA------------------------------------------------------------------TG------------------------TT--GCTTCT--CC---TTCGTAGGCTTCACCATGATTGGCACCTATGTGGCAGTGACTGCCGTGGGCCTGGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTACAAGAAGATTCCCTTCGCCCGTGTACCTCCCAAAAGCTATTTTACAGGTAAGGAACGTCTTT---------A---------------------------------------------------------------------------TCAC--------CCCC------------------AGATATGAAATA----------------------------------A-CCACGTATT--GT--AC--TC---TCCAAAGGCTTCACCATGATCGGCGCCTATGTGGCAGTGACAGCCGTGGGCCTGGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................TTCACCATGATCGGCGCCTATGTGGC......................	26	1	4.00	4	1	2	0	0	1	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGCCT.............................	22	1	3.00	3	2	0	0	0	1	0
.........GATTCCCTTCGCCCGTGTACCTCCCAAA....................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
.......AAGATTCCCTTCGCCCGTGTACCTCCCA......................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGCCTATGTG........................	27	1	2.00	2	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGATCGGCGCCTATGTGGCAGTG..................	24	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCG................................	19	1	2.00	2	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................GACAGCCGTGGGCCTGGGC	19	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGC...............................	20	1	2.00	2	0	0	0	0	2	0
.........GATTCCCTTCGCCCGTGTACCTCCCA......................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................GGCAGTGACAGCCGTGGGCCT....	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................ATGTGGCAGTGACAGCCGTGGGCC.....	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGATCGGCGCCTATGTGGCAGTGAC................	26	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGCCTATGT.........................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CCTATGTGGCAGTGACAGCCGTGGGCCC....	28	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................GATCGGCGCCTATGTGGCAGT...................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCTTCACCATGATCGGCGC...............................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGATCGGCGCCTATGTGGCAGTGA.................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................CCATGATCGGCGCCTATGTGGCAGTGA.................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTATGTGGCAGTGACAGCC............	19	1	1.00	1	1	0	0	0	0	0
........AGATTCCCTTCGCCCGTGTACCTCCC.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........GATTCCCTTCGCCCGTGTACCT..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..ACAAGAAGATTCCCTTCGCCCGTGTAC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CCTATGTGGCAGTGACAGCC............	20	1	1.00	1	0	1	0	0	0	0
.........GATTCCCTTCGCCCGTGTACCTCCCG......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................ACCATGATCGGCGCCTATGT.........................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGGCTTCACCATGATCGGCGCC..............................	22	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................TCACCATGATCGGCGCCTATGT.........................	22	1	1.00	1	0	1	0	0	0	0
.........GATTCCCTTCGCCCGTGT..............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................ACCATGATCGGCGCCTAT...........................	18	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................CTATGTGGCAGTGACAGCCGTGGGCCT....	27	1	1.00	1	1	0	0	0	0	0
..........ATTCCCTTCGCCCGTGTACCTCCC.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................CGCCCGTGTACCTCCCAAAAGCTATTTTA..........................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCTTCACCATGATCGGCGCCT.............................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGCC..............................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GCAGTGACAGCCGTGGGCCT....	20	1	1.00	1	1	0	0	0	0	0
CTACAAGAAGATTCCCTTCG.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................TGGCAGTGACAGCCGTGGGCCTGGGC	26	1	1.00	1	1	0	0	0	0	0
...........TTCCCTTCGCCCGTGTACCTCCCAA.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGCCTATGTGGC......................	29	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................TCACCATGATCGGCGCCTATGTGGC......................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATCGGCGCCTA............................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGTGACAGCCGTGGGCCTGGGC	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................TCGGCGCCTATGTGGCAGTGAC................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGGCAGTGACAGCCGTGGGCC.....	21	1	1.00	1	1	0	0	0	0	0
..ACAAGAAGATTCCCTTCGCCC..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CACCATGATCGGCGCCTATGTGGCAGT...................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGATCGGCGCCTATGTGGCAGTG..................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CGCCTATGTGGCAGTGACAGCC............	22	1	1.00	1	0	1	0	0	0	0

droBip1

CTACAAGAAGATTCCCTTCGCCCGTGTACCTCCCAAAAGCTATTTTACAGGTGAGGAAC-----------------CC----TTT--ATCT--------------------------------------------------------ATCT---------------A--TACACGGTCAACCGTAGATATGAAATA----------------------------------AACCACGTATT--GT--AC--TC---TTGCCAGGCTTCACCATGATTGGCGCCTATGTGGCAGTGACCACCGTGGGTCTGGGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTACAAGAAGATTCCCTTCGCTCGTGTGCCTCCCAAGAGTTATTTCACAGGTGAGTGGGATCCTC---------GTCCCCTGCTC--GCCTGCG--------------------------------------------------------T---------------TACTATGTG----------------TATT------------------------------CGATAA-CC-----TT-TGC-TCC--CG---TGTGCAGGCTTCACCATGATTGGCACCTATGTGGCCGTCACCACTGTCGGCTTGGGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATGTGGCCG....................	27	1	6.00	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATGTGGCC.....................	26	1	4.00	4	0	2	1	1	0	0	0	0	0	0
.................TCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	1	0	0	0	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................TATGTGGCCGTCACCACTGTCGGCT.....	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CGTCACCACTGTCGGCTTGG..	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0
..................CGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................TTCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0
...............CTTCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............CTTCGCTCGTGTGCCTCCCAAGAGT.................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	0	0	0	1	0	0
...CAAGAAGATTCCCTTCGCTCGTGTGCC...........................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATGTGGCCGT...................	28	1	2.00	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................GCACCTATGTGGCCGTCACCAC.............	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATGTGG.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................TTCGCTCGTGTGCCTCCCA......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTCACCACTGTCGGCTTGG..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CATGATTGGCACCTATGTGGCCGTCACC...............	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............CTTCGCTCGTGTGCCTCCC.......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATTGGCACCTATGTG........................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTCACCACTGTCGGCTTGGGG	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................CTCCCAAGAGTTATTTCACAGG......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CAAGAAGATTCCCTTCGCTCGTGTGC............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TCGTGTGCCTCCCAAGAGTTATTTC...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................CCTATGTGGCCGTCACCAC.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CAAGAAGATTCCCTTCGCTC..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCTTCACCATGATTGGCA................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CATGATTGGCACCTATGTGG.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATGTGGC......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CGCTCGTGTGCCTCCCAAGA...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........TTCCCTTCGCTCGTGTGCCTCCCAAGAG..................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATTGGCAC...............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ATTCCCTTCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
CTACAAGAAGATTCCCTTCGCT...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GAAGATTCCCTTCGCTCGTGTGCCTCC........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CGTCACCACTGTCGGCTTGGGT	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GAAGATTCCCTTCGCTCGTGTGCC...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTGGCCGTCACCACTGTCGG.......	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................GGCTTCACCATGATTGGCA................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTGGCCGTCACCACTGTCGGCTTGGG.	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CACCATGATTGGCACCTATGTGGCCGTC..................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TCGCTCGTGTGCCTCCCAAGAG..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................TTCACCATGATTGGCACCTATGTGGCC.....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................CGTGTGCCTCCCAAGAGTTA...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.TACAAGAAGATTCCCTTCGCTCGTG...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATTGGCACCTATGTGGCCGTCACC...............	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TATGTGGCCGTCACCACTGTCGGC......	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................TGTGGCCGTCACCACTGTC.........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......AAGATTCCCTTCGCTCGTGTGCCT..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........GATTCCCTTCGCTCGTGTGC............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................AGGCTTCACCATGATTGGCACC..............................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTCACCACTGTCGGCTTGGG.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................GTGTGCCTCCCAAGAGTTA...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..ACAAGAAGATTCCCTTCGCTCGTG...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTACAAGAAGATTCCCTTCGCTCGTGTGCCTCCCAAGAGTTATTTCACAGGTGAGTGGA-TCCTC---------GTCCCCTGCTC--GCCTGCG--------------------------------------------------------T---------------TACTA--TG----------------TGCATT----------------------------CGATAA-CC-----TT--GC-TCC--CG---TGTACAGGCTTCACCATGATTGGCACCTATGTGGCCGTCACCACTGTCGGCTTGGGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................CACCACTGTCGGCTTGGG.	18	1	4.00	4	4	0	0	0	0	0
.................TCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................CACCACTGTCGGCTTGGGT	19	1	2.00	2	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................ACCACTGTCGGCTTGGGT	18	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CGTCACCACTGTCGGCTTGGGT	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................CCATGATTGGCACCTATGT.........................	19	1	1.00	1	0	1	0	0	0	0
.......AAGATTCCCTTCGCTCGTGTGCCTCCCA......................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...............CTTCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTATGTGGCCGTCACCACT............	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATGTGGC......................	25	1	1.00	1	0	1	0	0	0	0
.............CCCTTCGCTCGTGTGCCTCCCAA.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................TTCGCTCGTGTGCCTCCCAAG....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.TACAAGAAGATTCCCTTCGCTCGTG...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................CGTCACCACTGTCGGCTTGGGG	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGATTGGCACCTATGTGGCCGT...................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TCACCACTGTCGGCTTGGG.	19	1	1.00	1	0	0	0	0	0	1
................TTCGCTCGTGTGCCTCCCAAGA...................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......AAGATTCCCTTCGCTCGTGTGCCTCCC.......................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1

droWil2

CTACAAGAAGATTCCATTTTTACGTGTGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCATGATCGGTACCTATGTGGCGGTGACCGCTGTTGGTCTGGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................TTCACCATGATCGGTACCTATGTGGCGG....................	28	1	5.00	5	0	5	0	0	0
........................................................................................................................................................................................................................................................................ATTCACCATGATCGGTACCTATGTGGC......................	27	1	4.00	4	0	0	3	1	0
..........................................................................................................................................................................................................................................................................TCACCATGATCGGTACCTATGTGGCGG....................	27	1	4.00	4	0	3	0	1	0
..............................................................................................................................................................................................................................................................................CATGATCGGTACCTATGTGGC......................	21	1	3.00	3	0	0	2	1	0
......................................................................................................................................................................................................................................................................GGATTCACCATGATCGGTACC..............................	21	1	3.00	3	0	1	0	2	0
.......................................................................................................................................................................................................................................................................................................ACCGCTGTTGGTCTGGGC	18	1	2.00	2	0	0	0	2	0
....................TACGTGTGCCGCCCAAGAGC.................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................................................................................................................CACCATGATCGGTACCTATGTGGCGG....................	26	1	2.00	2	0	2	0	0	0
CTACAAGAAGATTCCATTT......................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................................GATTCACCATGATCGGTACCTATGTGGC......................	28	1	1.00	1	0	0	1	0	0
..................................AAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCA.........................................	25	1	1.00	1	0	0	0	1	0
.....................ACGTGTGCCGCCCAAGAGC.................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................TTACGTGTGCCGCCCAAGAGCTACT.............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................TGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATC..............................................	28	1	1.00	1	0	1	0	0	0
..................................AAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACC..........................................	24	1	1.00	1	0	1	0	0	0
..................TTTACGTGTGCCGCCCAAGAGCTACTTC...........................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATCGGTACCTATGTGGCGGT...................	28	1	1.00	1	0	1	0	0	0
...................................AGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATT..............................................	19	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................CGGTACCTATGTGGCGGT...................	18	1	1.00	1	0	0	0	1	0
.........................GTGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...................................................	24	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................GGATTCACCATGATCGGT.................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................CACCATGATCGGTACCTATGTGGC......................	24	1	1.00	1	0	0	1	0	0
.................TTTTACGTGTGCCGCCCAAGA...................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................TGGCGGTGACCGCTGTTGGTCTGGGC	26	1	1.00	1	0	1	0	0	0
..................................AAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATT..............................................	20	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................ATTCACCATGATCGGTACCTATGT.........................	24	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................TGGCGGTGACCGCTGTTGGTCTGGG.	25	1	1.00	1	0	1	0	0	0
.................................CAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCAT........................................	27	1	1.00	1	0	1	0	0	0
....................TACGTGTGCCGCCCAAGAGCTACT.............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.................TTTTACGTGTGCCGCCCAAGAGCTACT.............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.......................GTGTGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...................................................	26	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................CTATGTGGCGGTGACCGCTGTTGG.......	24	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................TGATCGGTACCTATGTGGCGGTGACCGC.............	28	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................CATGATCGGTACCTATGTGGCGGTGAC................	27	1	1.00	1	1	0	0	0	0
..................TTTACGTGTGCCGCCCAAGAGCTA...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.........................GTGCCGCCCAAGAGCTACTT............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................ACCTATGTGGCGGTGACCG..............	19	1	1.00	1	0	1	0	0	0
....................TACGTGTGCCGCCCAAGAGCTACTTCAG.........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................GGATTCACCATGATCGGTAC...............................	20	1	1.00	1	0	0	0	1	0
.TACAAGAAGATTCCATTTTTACGTG...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.............................CGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................TTCACCATGATCGGTACCTATGTG........................	24	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................CATGATCGGTACCTATGTGGCGGT...................	24	1	1.00	1	0	0	0	1	0
.............................................CAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCATGATCGGTACC..............................	25	1	1.00	1	0	1	0	0	0
.......................................CTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCATGATCGG..................................	27	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................GGATTCACCATGATCGGTACCTATGTGG.......................	28	1	1.00	1	0	0	1	0	0
...............................................GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCATGATCGGTA................................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................GTGGCGGTGACCGCTGTTGGTCTGGGC	27	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................ACCTATGTGGCGGTGACCGCT............	21	1	1.00	1	0	0	0	1	0
..........................TGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT...............................................	27	1	1.00	1	0	0	0	1	0
........................................TACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTCACCATGATCGG..................................	26	1	1.00	1	0	1	0	0	0
.......................GTGTGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..................................................	27	1	1.00	1	0	0	0	1	0
..........................TGCCGCCCAAGAGCTACTTCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.................................................	25	1	1.00	1	0	0	0	1	0
...................TTACGTGTGCCGCCCAAGAGCTAC..............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0

droVir3

CTACAAGAAGATACCCTTTGCTCGTGTGCCGCCCAAGAGCTATTTCACAGGTGCATTCAA-------ACAGCTG-----------TTGT----------C-CATAATTATTAGCATTAAA----------------------------------------------------------------------------------------------ACTGATTC---------------------CA--TTTCTATGCAACGCAGGCTTCACCATGATTGGCACCTATGTGGCCGTCACCGCTGTCGGTCTGGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................CACCGCTGTCGGTCTGGGC	19	1	5.00	5	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTCACCGCTGTCGGTCTGGGC	21	1	3.00	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........GATACCCTTTGCTCGTGTGCCGCCC.......................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTGCTCGTGTGCCGCCCAAG....................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................CCATGATTGGCACCTATGTGGCCGTCACC...............	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GGCACCTATGTGGCCGTCACCGCTGTC.........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GGCCGTCACCGCTGTCGGTCTGGGC	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................ACCGCTGTCGGTCTGGGC	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTGTGCCGCCCAAGAGCTATT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGAAGATACCCTTTGCTCGTGTGCCGCCC.......................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................TTGGCACCTATGTGGCCGTCACCGCTG...........	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTTTGCTCGTGTGCCGCCCAA.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CAAGAAGATACCCTTTGCTCGTGTGCCGC.........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGATTGGCACCTATGTGGCCGT...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTTGCTCGTGTGCCGCCCAAGAGCTA...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGTGTGCCGCCCAAGAGCTATTTCAC.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCACCATGATTGGCACCTATG..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGCATTCAA-------ACAGCTG-----------TTGT----------C-CATAA...............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGCCGCCCAAGAGCTATTTCA..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................TTCACCATGATTGGCACCTATGTGGCCGTCACCGCTGTCGGTCTGG..	46	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................TTTGCTCGTGTGCCGCCCA......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTTTGCTCGTGTGCCGCCCAAGAGCTA...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGAAGATACCCTTTGCTCGTGTGCC...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTGTGCCGCCCAAGAGCTATTTCA..........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGCTCGTGTGCCGCCCAAGA...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTGCTCGTGTGCCGCCCAA.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AAGATACCCTTTGCTCGTGTGCC...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................TGCCGCCCAAGAGCTATTTCAC.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCGTGTGCCGCCCAAGAGC.................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACCCTTTGCTCGTGTGCCGC.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATACCCTTTGCTCGTGTGC............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCCCAAGAGCTATTTCACAG.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAAGATACCCTTTGCTCGTGTGC............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACAAGAAGATACCCTTTGCTCGTGTGC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GATACCCTTTGCTCGTGTGC............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCGTGTGCCGCCCAAGAGCTA...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TACAAGAAGATACCCTTTGCTCGTGTGC............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAAGATACCCTTTGCTCGTGTGCC...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAGGCTTCACCATGATTGGCACCT.............................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GATTGGCACCTATGTGGCCGT...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GCCGTCACCGCTGTCGGTCTGGGC	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................ACCATGATTGGCACCTATGTG........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTGCTCGTGTGCCGCCCAAGAGCT................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATACAAGAAGATTCCCTTTGCTCGCGTGCCACCCAAGAGCTATTTCACTGGTGAGTTCAA-------T------C---------------TAAGATT-TAT----------------------------------------------GCATACG--------TAGA-------------------------------CAT------CTAT----A------------------------TT--TA--TA--CT---TTTGCAGGCTTTACCATGATTGGAGCCTATGTGGCCGTCACCACAGTGGGTCTGGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................CTTTACCATGATTGGAGCCT.............................	20	1	2.00	2	1	0	0	0	0	1
..................TGCTCGCGTGCCACCCAAGAGC.................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......GAAGATTCCCTTTGCTCGC................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTTACCATGATTGGAGCCT.............................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GGCTTTACCATGATTGGAGC...............................	20	1	1.00	1	1	0	0	0	0	0

droGri2

ATACAAGAAGATCCCATTTGCCCGTGTGCCGCCTAAGAGCTATTTCACAGGTGCGTTAA----TAATA------ATGCA--CTTTCAATATACGAAT---------------------------------------------------------ATAAGCAT----ATATATATA----------------TATA----T------ATATATATA------------------------TA--AC--TA--TA---TACGCAGGCTTCACAATGATTGGCGCCTATGTGGCGGTGACCACGGTCGGCCTGGGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................ATGATTGGCGCCTATGTG........................	18	1	1.00	1	1	0

dsi_26701

x:5869867-5869933 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads