dsi_26696

TGCAAATCTTCAAGACCCAGCTTTGCCTTAACACTACGGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTAAATTGAAGGGGCTCCTCCTAATTGGCCATGGTTGTTTGTTTTCCTATATGGTTTAAAATAAAAATTTCAAAATTTGCAAATTAAGCTTTAGATAGTCTCTAGTCAATATTTCATCTAACAGTAAATGTTTATTGTCATTTTAAGCACTTTAGCACGAAGCAAGTTTATAATATGCGCTT ************************************************...((.((......((((((..((((((((((((....((((..(((.....((((..(((((((.....)).................)))))..)))).....)))))))..)))))))..))))).....))))))......)).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR902009 testis	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	M023 head
.......CTTCAAGACCCAGCTTTGCC...............................................................................................................................................................................................................................	20	0	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................TAGTCTCTAGTCGATA.......................................................................	16	1	2	1.00	2	0	0	0	0	1	1	0	0	0	0	0
...............CCCAGCTTTGCCTTAACACTACGGC..................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................AGGCCAAGCTTCCCTCTTA.......................................................................................................................................................................................	19	3	10	0.70	7	0	6	0	0	0	0	0	0	0	1	0
.....ATCTTCAAGACCCAGCTTTGCCTT.............................................................................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TAGTCTCTAGTCGAT........................................................................	15	1	4	0.50	2	0	0	0	0	0	0	0	1	1	0	0
................................................AGGCCAAGCTTCCCTCTTAG......................................................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.......CTTCAAGACCCAGCTTTGCCT..............................................................................................................................................................................................................................	21	0	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................AGTCTCTAGTCGATAGTT....................................................................	18	2	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................CTATGGTTGCTTGTTTTC........................................................................................................................................	18	2	15	0.07	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GTCTCTAGTCGATATGCC...................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................TATTTCATCTATCTGTAACT.....................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................TTGTGTTCCCATATGGT...............................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................GAAGGTCTCTAGTCGATA.......................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

ACGTTTAGAAGTTCTGGGTCGAAACGGAATTGTGATGCCGAAAGAAGCTCCGGTTCCACGGGCGAATCCATTTAACTTCCCCGAGGAGGATTAACCGGTACCAACAAACAAAAGGATATACCAAATTTTATTTTTAAAGTTTTAAACGTTTAATTCGAAATCTATCAGAGATCAGTTATAAAGTAGATTGTCATTTACAAATAACAGTAAAATTCGTGAAATCGTGCTTCGTTCAAATATTATACGCGAA ************************************************...((.((......((((((..((((((((((((....((((..(((.....((((..(((((((.....)).................)))))..)))).....)))))))..)))))))..))))).....))))))......)).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
........................................................................................................................................................................AGATGAGTTAGACAGTAGATTGT...........................................................	23	3	1	5.00	5	5	0	0	0	0	0
................................................................................................................................................................................................................AAAACTCGTGAAATCTCGCTTCGT..................	24	3	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................GATGAGTTAGACAGTAGATTGT...........................................................	22	3	1	1.00	1	1	0	0	0	0	0
..........GTTCTGGGTCGAGACGGGAATGT.........................................................................................................................................................................................................................	23	3	2	0.50	1	0	0	1	0	0	0
............TCTGGGTCGAGACGGGAATGT.........................................................................................................................................................................................................................	21	3	2	0.50	1	0	0	1	0	0	0
..GTTTAGAAAGTCTGAGTCGAA...................................................................................................................................................................................................................................	21	3	9	0.33	3	3	0	0	0	0	0
.................................................CCGGTGCGACGGGCGAATC......................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................TCAGAGAGCGGTTATAAA....................................................................	18	2	5	0.20	1	0	0	0	1	0	0
.....................................................................................................................................................................CAGAGAGCGGTTATAAA....................................................................	17	2	15	0.13	2	0	0	2	0	0	0
.....................................................................................................................................................................CAGAGAGCGGTTATAA.....................................................................	16	2	20	0.10	2	0	0	1	0	0	1
..........................................................................................................................................................................................................................................AAATATTATACGCGC.	15	1	11	0.09	1	0	0	0	0	1	0
...........................................................................................................................................TCTTAAACGTTTAATGCGAGAT.........................................................................................	22	3	11	0.09	1	0	1	0	0	0	0
...................................................................................AGGAGGATTACCCGCTA......................................................................................................................................................	17	2	15	0.07	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:14756358-14756607 +	dsi_26696	TGCAAATCTTCAAGACCCAGCTTTGCCTTAACACTACGGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTAAATTGAA---GG-GGCTCC-----TCCTAATTGGCCATGGTTGTTT-------------GTTTTCCTATA-TG---------------------------------------GTTTAAAATAAAAATTTCAA-----------------AATTTGCAAATTAAGCTTTAGATAGTCTCTAGTCAATATTTCATCTAACAGTAAATGTTTATTGTCATTTTAAGCACTTTAGCACGAAGCAAGTTTATAATATGCGCTT
droSec2	scaffold_1:11564833-11565116 +		TGCAAATCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAA---GGGTCTT-C-----TCCTAATTGGCCATGGTTGTTT-------------GTTTTCCTATA-TGATCAATCGTTTTTATATGA----AAACAAAAAT-TTATGGTTTAAAATAAAAATTTCAA-----------------AATTTGCAAATTAAGCTTTAGATAATCTCTAGTCAATATTTCATCTAACAGTAAATGTTTATTGCCATTTTAAGTACACTAGCACGAAGCAAGTTTATAATATGCGCTA
dm3	chr2R:14075727-14075956 +		TGCAAATCTTCAAGACGCAGCTTTGTCTTAACACCACTGCTTTCTTCGAGGCCAAGGTACCCGCTTAGGTCAATTGAA---GG-GGTTCC-----TCCTAA-TGGCAATAGTTGTTT-------------GTTTTC-----------AATCGTTTTTATATGACTAAAAACAACTATA--A--T----GAAAAAAAATTTCAA-----------------AATTTGCAAATTAAGC----------------------------------------GTTTATTGACATTTTAAGCACACTAGCACGAAATAAGTTTATAACTCGCGTTT
droEre2	scaffold_4845:8296094-8296313 +		TGCAAATCTTCAAGACCCAGCTTTGCCTTAATACTAATGCTTTCTTCGAGGCCAAGGTACCCGTCTAGGTAAATTGTT---A-CCGTTCTCGTGTTTCTGA-AGGCATTT----TTT-------------TTATTATTATTTTGTTT------------ATAA--------------------TTTTAAAATATAAATTTTAA-----------------AATTGGGAAATAAAACTTTAGATAACCTTTCGTCAATAGTTCATCAAAAAGTTTTTTTTTTTTTTAGTTTT--------------------------------------
droYak3	2R:15108803-15109037 -		TTCAAATCTTCAAGACCCAGCTTTGCCTTAATACTACTGCTTTCTTTGAGGCCAAGGTACCCGCCTAGGTCAATTCAA---GGCACTTCC-----TCCTAATTGGCAATACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------AAATTTCAAAAATTTATATGTTTATAAATTTGCAAGTAAAACTTTAGATAATCCGTAGTCAAAAGTTTATATAAAAGTGAATGTTAATTACCATTTCT---------------AACAAGCTTATA----------
droEug1	scf7180000409672:3070030-3070096 +		TGCAAGTCTTCAAGACCCAGCTGTGTCTTAATACCTCTGCTTTCTTCGAGGCCAGGATTCCTGTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302292:2092299-2092419 +		TGCAATATTTCAAAACCCAGCTATGTCTCAACACTTCTGCTTTCTTTGAGGCCAAGATACCCGCTTAGGTCAAGGGC---CA--------------------------TAATTCTTAGCTGTTGTTTAAGG--------------------------------------------------------------------------------------------------------------------------------TGCTGCTTACAATAAATAT---------------------------------------------------
droTak1	scf7180000416016:672739-672865 -		TGCAATTCTTCAAGACCCAGCTATGCCTCAATACTACTGCTTTCTTCGAGGCCAAGATACCTGCCTAAGTCTATAAAAACGAGCAACCCG-----TAGTTATTGGATGTTGTGGAAT-------------GTTCTTGCTTA-TA---------------------------------------GT------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491027:614417-614493 +		TGCAACTCTTCAAGACCCAGCTGTGTCTCAACACTAGTGCGTTCTTCGAGGCCAAGATCCCAGTTTAAGTGAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000769565:4398-4477 -		TGCAAGTGTTCAAGACCCAGCTGTGCCTCAATACCAGTGCTTTCTTCGAGGCCAAGATTCCCGTTTAAGTCTTTTAAA---AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453851:248971-249048 -		TGCAATTCTTCAGAACTCAGCTCTGTCTTAACACTTCTGCTTTCTTCGAGGCCAAGATTCCCGTCTAATTTAATAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302471:278640-278715 -		TGCAGCAGTTCACCACCCAGCTGTGCCTCAATCCCAGCGCCGTCTATGAGGCCAAAGTACCCGTTTAGGCTAAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:5038456-5038521 -		TCCAG---TACAAGACCCAGTTGTGCCTCAACCCCGATGCCTTCCACGAGGTTCAAGTTCCTGTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395751:262256-262313 -		TCCAG---TTCAAGACCCAGTTGTGCCTCAACCCCGAAGCCTTCCACGAGGTTCAAGTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	3:11361069-11361154 -		TGACGCGGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAAAATA---TAGAAATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:6764199-6764284 -		TGACGCGGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAAAATA---TAGAAATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004513:3933825-3933886 -		GGCA----TACAAGACTTTGGTTTGTCTTAATTCGTCGGCCTTCTATGAGGCACAGATACCAGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12875:13865843-13865916 +		CACAAAATCGGTCTACCCGTGTTTGCCTCAAGCCCGAAGCCTTTGAAATGGCTCAGGTGGTGGTGTAAATTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGCAAATCTTCAAGACCCAGCTTTGCCTTAACACTACGGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTAAATTGAA---GG-GGCTCC-----TCCTAATTGGCCATGGTTGTTT-------------GTTTTCCTATA-TG---------------------------------------GTTTAAAATAAAAATTTCAA-----------------AATTTGCAAATTAAGCTTTAGATAGTCTCTAGTCAATATTTCATCTAACAGTAAATGTTTATTGTCATTTTAAGCACTTTAGCACGAAGCAAGTTTATAATATGCGCTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......CTTCAAGACCCAGCTTTGCC..............................................................................................................................................................................................................................................................................................................	20	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGCTTTGCCTTAACACTACGGC.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....ATCTTCAAGACCCAGCTTTGCCTT............................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......CTTCAAGACCCAGCTTTGCCT.............................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGCAAATCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAA---GGGTCTT-C-----TCCTAATTGGCCATGGTTGTTT-------------GTTTTCCTATA-TGATCAATCGTTTTTATATGA----AAACAAAAAT-TTATGGTTTAAAATAAAAATTTCAA-----------------AATTTGCAAATTAAGCTTTAGATAATCTCTAGTCAATATTTCATCTAACAGTAAATGTTTATTGCCATTTTAAGTACACTAGCACGAAGCAAGTTTATAATATGCGCTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................A-TGATCAATCGTTTTTATATGA----..................................................................................................................................................................	22	2	2.00	4	4	0	0	0
.......................................................................AATTGAA---GGGTCTT-C-----TCCTA.....................................................................................................................................................................................................................................	20	2	2.00	4	0	2	2	0
..............................................CGAGGCCAAGGTGCCCGCTTAGGTC..................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	2	0
......................................................................CAATTGAA---GGGTCTT-C-----TCCTAATT..................................................................................................................................................................................................................................	24	2	1.00	2	0	0	2	0
......................................................................................................................................TCCTATA-TGATCAATCGTTTTT............................................................................................................................................................................	22	2	1.00	2	1	0	1	0
.............................................................................................................................................................................................................................................................CAATATTTCATCTAACAGT.........................................................	19	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................................................................TGTTTATTGCCATTTTAAG...................................	19	1	1.00	1	1	0	0	0
...............................................................................................................................................GATCAATCGTTTTTATATGA----..................................................................................................................................................................	20	2	1.00	2	1	0	1	0
..........................................................................................................................................................................................................................................................................................TGCCATTTTAAGTACACTAGCACGAA.....................	26	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................AGTACACTAGCACGAAGCAAGTT..............	23	1	1.00	1	1	0	0	0
............................................................CCGCTTAGGTCAATTGAA---G.......................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	2	0
..........................CTTAACACTACTGCTTTCTTCGA........................................................................................................................................................................................................................................................................................	23	2	1.00	2	1	0	1	0
.........................................................TGCCCGCTTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0
.....................................................AAGGTGCCCGCTTAGGTCA.................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0
....................................................CAAGGTGCCCGCTTAGGTCAATTGAA---G.......................................................................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0
.........................................................................TTGAA---GGGTCTT-C-----TCCTAATT..................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0
...................................................CCAAGGTGCCCGCTTAGGTC..................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0
........................................................GTGCCCGCTTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0
............................TAACACTACTGCTTTCTTCGAGGC.....................................................................................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0
................................................................TTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0
....................................................CAAGGTGCCCGCTTAGGTC..................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0
..........................................................GCCCGCTTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0
.....................................................AAGGTGCCCGCTTAGGTCAATTGAA---GG......................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0
...................................................CCAAGGTGCCCGCTTAGGTCAATTG.............................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	1
..........CAAGACCCAGCTTTGCCTT............................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0
...................................................CCAAGGTGCCCGCTTAGGTCAAT...............................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	1	0
.............................................................CGCTTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0
....AATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
......................................................................CAATTGAA---GGGTCTT-C-----TC........................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0
.....ATCTTCAAGACCCAGCTTTGCCTT............................................................................................................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0
....AATCTTCAAGACCCAGCTTTGCCTTAACA........................................................................................................................................................................................................................................................................................................	29	2	0.50	1	1	0	0	0
.....ATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0
........................................................GTGCCCGCTTAGGTCAATTGAA---GG......................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0
.........................................TTCTTCGAGGCCAAGGTGCCCGCTTAGG....................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	1	0
..................................................................................................................................GTTTTCCTATA-TGATCAATC..................................................................................................................................................................................	20	2	0.50	1	1	0	0	0
...............................................................CTTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0
................................................................TTAGGTCAATTGAA---GGGTCTT-C-----TCCT......................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0
...........................TTAACACTACTGCTTTCTTCGAGGCC....................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0
....................................................CAAGGTGCCCGCTTAGGTCA.................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0
............................................................CCGCTTAGGTCAATTGAA---GGGT....................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
..........................................................................................................................................ATA-TGATCAATCGTTTTTATATGA----..................................................................................................................................................................	24	2	0.50	1	0	1	0	0
........................................................................................................................................CTATA-TGATCAATCGTTTTTATATGA----..................................................................................................................................................................	26	2	0.50	1	0	0	1	0
.......................................................................AATTGAA---GGGTCTT-C-----TCCTAATT..................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0
......................................GCTTTCTTCGAGGCCAAGGT...............................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0
........................................................GTGCCCGCTTAGGTCAATTGAA---GGGTC...................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0

dm3

TGCAAATCTTCAAGACGCAGCTTTGTCTTAACACCACTGCTTTCTTCGAGGCCAAGGTACCCGCTTAGGTCAATTGAA---GG-GGTTCC-----TCCTAA-TGGCAATAGTTGTTT-------------GTTTTC-----------AATCGTTTTTATATGACTAAAAACAACTATA--A--T----GAAAAAAAATTTCAA-----------------AATTTGCAAATTAAGC----------------------------------------GTTTATTGACATTTTAAGCACACTAGCACGAAATAAGTTTATAACTCGCGTTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................GCTTAGGTCAATTGAA---GG-GGTTCC-----..........................................................................................................................................................................................................................................	24	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	10	0	0	0	0	0	0	0
.............................................................CGCTTAGGTCAATTGAA---GG-GGTTCC-----T.........................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTTAGGTCAATTGAA---GG-GGT..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CAAGGTACCCGCTTAGGT...................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAAATCTTCAAGACGCAGC....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATTGACATTTTAAGCACACTA............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................ACAACTATA--A--T----GAAAAAAAAT...................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ACTGCTTTCTTCGAGGCCAAGG................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATTTTAAGCACACTAGCT.........................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGCAAATCTTCAAGACCCAGCTTTGCCTTAATACTAATGCTTTCTTCGAGGCCAAGGTACCCGTCTAGGTAAATTGTT---A-CCGTTCTCGTGTTTCTGA-AGGCATTT----TTT-------------TTATTATTATTTTGTTT------------ATAA--------------------TTTTAAAATATAAATTTTAA-----------------AATTGGGAAATAAAACTTTAGATAACCTTTCGTCAATAGTTCATCAAAAAGTTTTTTTTTTTTTTAGTTTT--------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................GTT---A-CCGTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	26	1	7.00	7	3	0	0	0	4	0	0
.............................................................................T---A-CCGTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	24	1	5.00	5	4	0	0	0	1	0	0
......................................................................AAATTGTT---A-CCGTTCTCGT............................................................................................................................................................................................................................................	19	1	5.00	5	2	0	0	0	2	1	0
...........................................................................................................................................................................................AAAATATAAATTTTAA-----------------AATTGGGA.....................................................................................................	24	1	4.00	4	2	0	0	0	0	2	0
.................................................................................A-CCGTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	23	1	4.00	4	1	0	0	0	3	0	0
.....................................................................................GTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	3	1	0
.....................................................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGT............................................................................	24	1	3.00	3	1	0	0	0	2	0	0
.......................................................................AATTGTT---A-CCGTTCTCGTGTTTCTGA-A..................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	3	0	0
.............................................................................................................................................................................................................................ATTGGGAAATAAAACTTTA.........................................................................................	19	1	3.00	3	2	0	0	0	1	0	0
.............................................................................T---A-CCGTTCTCGTGTTTCTGA-A..................................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0	0
...............................................................................................................................................................................................TATAAATTTTAA-----------------AATTGGGA.....................................................................................................	20	1	2.00	2	0	0	0	0	1	1	0
.GCAAATCTTCAAGACCCAGCTT..................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
.............................................................................................................................................................................................AATATAAATTTTAA-----------------AATTGGGA.....................................................................................................	22	1	2.00	2	1	0	0	0	0	1	0
.........................................................................................................................................................................................................AA-----------------AATTGGGAAATAAAACTTTAGAT......................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
.......................................................................AATTGTT---A-CCGTTCTCGTGT..........................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCAATA.......................................................................	29	1	2.00	2	2	0	0	0	0	0	0
.............................................................................T---A-CCGTTCTCGTGTTTCTGA-AGG................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
.............................................................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAGTT....................................................................	24	1	2.00	2	2	0	0	0	0	0	0
....................................................................................CGTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0
.................................................GGCCAAGGTACCCGTCTAG.....................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
..............................................................................................................................................................................................ATATAAATTTTAA-----------------AATTGGGA.....................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
.............................................................................................................................................................................................AATATAAATTTTAA-----------------AATTGGGAA....................................................................................................	23	1	2.00	2	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCAAT........................................................................	28	1	2.00	2	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCA..........................................................................	26	1	2.00	2	1	0	0	0	0	1	0
.................................................................................A-CCGTTCTCGTGTTTCTGA-A..................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0
....................................................CAAGGTACCCGTCTAGGT...................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	0	0	0	1	0
.................................................GGCCAAGGTACCCGTCTA......................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
...........................................................................GTT---A-CCGTTCTCGTGTTTCTGA-AGGCAT.............................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0
.GCAAATCTTCAAGACCCAGCTTT.................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAACCTTTCGTCAATAG......................................................................	24	1	2.00	2	2	0	0	0	0	0	0
............................................TTCGAGGCCAAGGTACCCGTCTAGGT...................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................TTAGATAACCTTTCGTCAATA.......................................................................	21	1	2.00	2	1	0	0	0	1	0	0
.......CTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................ATTTTAA-----------------AATTGGGAAATAAAAC.............................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...............................................GAGGCCAAGGTACCCGTCTAG.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................TCGTGTTTCTGA-AGGCAT.............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................CTAATGCTTTCTTCGAGGC.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...AAATCTTCAAGACCCAGCTTTGCCTT............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCAA.........................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................TGCCTTAATACTAATGCTTTCTTCGA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AACTTTAGATAACCTTTCGT............................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................................................TTGTT---A-CCGTTCTCGTGTTTCTGA-AGGCA..............................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGGGAAATAAAACTTTAGA.......................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................GATAACCTTTCGTCAATAGTTCATCAA..............................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAACCTTTCGTCAA.........................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................CTCGTGTTTCTGA-AGGCATT............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
........................................................................ATTGTT---A-CCGTTCTCGTGT..........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................................GAGGCCAAGGTACCCGTCTAGGT...................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..........................................TCTTCGAGGCCAAGGTACCCGTC........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................AAATATAAATTTTAA-----------------AATTGGGA.....................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................GATAACCTTTCGTCAATAGTT....................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................TTATTATTATTTTGTTT------------ATAA--------------------TTT...............................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................AATTGGGAAATAAAACTTTA.........................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................AATAAAACTTTAGATAACCTTTCGTCA..........................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAGTTCATCA...............................................................	29	1	1.00	1	1	0	0	0	0	0	0
......................................................................AAATTGTT---A-CCGTTCTCGTGTTTCTG.....................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.GCAAATCTTCAAGACCCAGC....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................TTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................CGTTCTCGTGTTTCTGA-AGGCATT............................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................................CTTCGAGGCCAAGGTACCCGTCTAGGT...................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................GTGTTTCTGA-AGGCATTT----TT.....................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................ATATAAATTTTAA-----------------AATTGGGAAAT..................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................ATTGGGAAATAAAACTTTAGATA.....................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAACTTTAGATAACCTTTCGTCA..........................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................CCGTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.GCAAATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................AAATTGTT---A-CCGTTCTCGTGTTTCT......................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....ATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................AATTGGGAAATAAAACTTTAGATAAC...................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........................................TCTTCGAGGCCAAGGTACCCGTCTAG.....................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................GTTCTCGTGTTTCTGA-AGGCA..............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................GTTCTCGTGTTTCTGA-AG.................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................CCGTTCTCGTGTTTCTGA-AG.................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........................................TTTCTTCGAGGCCAAGGTACCCGTCTAG.....................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAAAACTTTAGATAACCTTTCGTCA..........................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................AATTGTT---A-CCGTTCTCGTGTTTCT......................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................AATAAAACTTTAGATAACCTTTCGTC...........................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.....ATCTTCAAGACCCAGCTTTGCCTT............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATAACCTTTCGTCAATA.......................................................................	18	1	1.00	1	1	0	0	0	0	0	0
....AATCTTCAAGACCCAGCTTTGCC..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTGGGAAATAAAACTTTAGATA.....................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
....................................................................GTAAATTGTT---A-CCGTTCTCGTGTTTCT......................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................GTTCTCGTGTTTCTGA-AGGCATTT----T......................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATAACCTTTCGTCAATAGTTC...................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................AATAAAACTTTAGATAACCTTTCGTCAAT........................................................................	29	1	1.00	1	0	0	0	0	1	0	0
..........CAAGACCCAGCTTTGCCTTAATACTAAT...................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAACTTTAGATAACCTTTCGT............................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................................................................GTT---A-CCGTTCTCGTGTTTCTGA-A..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................CGAGGCCAAGGTACCCGTCTAGGTA..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
......................................GCTTTCTTCGAGGCCAAGGTACC............................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................AATATAAATTTTAA-----------------AATTGGGAAAT..................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
......................................................................AAATTGTT---A-CCGTTCTCGTGTTT........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................TAATACTAATGCTTTCTTCG.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.............................AATACTAATGCTTTCTTCGAGGCC....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................T---A-CCGTTCTCGTGTTTCTGA-...................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................CTTTAGATAACCTTTCGT............................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...........................................................CCCGTCTAGGTAAATTGTT---A-CC....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................GTTCATCAAAAAGTTTTTTTTTT................................................	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................GATAACCTTTCGTCAATAGTTCATC................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...AAATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................................................................GTT---A-CCGTTCTCGTGTTTCTGA-AGGCA..............................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
......................................GCTTTCTTCGAGGCCAAGGTACCC...........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAGTTC...................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................ATTGGGAAATAAAACTTTAGATAA....................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................TTTCTTCGAGGCCAAGGTACCCGTCTA......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................TTTAA-----------------AATTGGGAAATAAAACTTTA.........................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................TTCTGA-AGGCATTT----TTT-------------TT.....................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..CAAATCTTCAAGACCCAGCTTTGCCT.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................GGCCAAGGTACCCGTCTAGGT...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................TTTGCCTTAATACTAATGC.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAGTTCATC................................................................	28	1	1.00	1	1	0	0	0	0	0	0
....................................................CAAGGTACCCGTCTAGGTA..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..............................................................GTCTAGGTAAATTGTT---A-CCGTTCTCGT............................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................GTT---A-CCGTTCTCGTGTTTCTGA-AGG................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
........................................................................ATTGTT---A-CCGTTCTCGTGTTTCTGA-...................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTAGATAACCTTTCGTCAATAAAA....................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........................................................ACCCGTCTAGGTAAATTGTT---A-CCGTTCT...............................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATAACCTTTCGTCAATAGT.....................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...................................................................................CCGTTCTCGTGTTTCTGA-AGGCATT............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAACTTTAGATAACCTTTCGTCAATA.......................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................ATATAAATTTTAA-----------------AATTGGGAA....................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................TT---A-CCGTTCTCGTGTTTCTGA-AGGC...............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTTTCGTCAATAGTT....................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...................GCTTTGCCTTAATACTAATGC.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAACCTTTCGTCAAT........................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................ATAAATTTTAA-----------------AATTGGGAA....................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................TTTTAA-----------------AATTGGGAAATAAAACT............................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTAGATAACCTTTCGTCAAA........................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................CTAGGTAAATTGTT---A-CCGTTCTCGTG...........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................TTTAGATAACCTTTCGTCAATA.......................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........CAAGACCCAGCTTTGCCTTAATACTAATG..................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.............................................................................T---A-CCGTTCTCGTGTTTCTGA-AGGCATT............................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
....AATCTTCAAGACCCAGCTTTGCCTTA...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.GCAAATCTTCAAGACCCAGCT...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.........................................................................TTGTT---A-CCGTTCTCGTGT..........................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAACCTTTCGTCA..........................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......CTTCAAGACCCAGCTTTGCCTTA...........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
....................CTTTGCCTTAATACTAATGC.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...AAATCTTCAAGACCCAGCTTTGCC..............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..CAAATCTTCAAGACCCAGCTTT.................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0	0
..CAAATCTTCAAGACCCAGC....................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0	0	0
.....ATCTTCAAGACCCAGCTTT.................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0
..CAAATCTTCAAGACCCAGCTT..................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
....AATCTTCAAGACCCAGCTT..................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0

droYak3

TTCAAATCTTCAAGACCCAGCTTTGCCTTAATACTACTGCTTTCTTTGAGGCCAAGGTACCCGCCTAGGTCAATTCAA---GGCACTTCC-----TCCTAATTGGCAATACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------AAATTTCAAAAATTTATATGTTTATAAATTTGCAAGTAAAACTTTAGATAATCCGTAGTCAAAAGTTTATATAAAAGTGAATGTTAATTACCATTTCT---------------AACAAGCTTATA----------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAAGT.....................................................................	23	1	30.00	30	0	6	0	0	0	1	23	0	0	0	0
................................................................................................................................................................................................................................................GATAATCCGTAGTCAAAAGT.....................................................................	20	1	17.00	17	0	6	0	0	0	0	11	0	0	0	0
.....................................................................................................................................................................................................................................GTAAAACTTTAGATAATCCGT...............................................................................	21	1	15.00	15	1	1	0	0	0	0	13	0	0	0	0
.................................................................................GGCACTTCC-----TCCTAATTGGC...............................................................................................................................................................................................................................	20	1	14.00	14	0	14	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAA.......................................................................	21	1	12.00	12	0	8	0	0	0	0	4	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAAGT..................................................................................................	22	1	11.00	11	0	1	0	0	0	0	10	0	0	0	0
.................................................................................GGCACTTCC-----TCCTAATTGGCAATACGT........................................................................................................................................................................................................................	27	1	11.00	11	0	1	0	0	0	0	10	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAAGTT....................................................................	24	1	10.00	10	0	3	0	0	0	0	7	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAAG......................................................................	22	1	10.00	10	0	2	0	0	0	0	8	0	0	0	0
...................................................................................................AATTGGCAATACGTGTTT-------------GT.....................................................................................................................................................................................................	20	1	9.00	9	0	1	0	0	0	0	8	0	0	0	0
.................................................................................GGCACTTCC-----TCCTAATTGGCA..............................................................................................................................................................................................................................	21	1	8.00	8	0	8	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATGTTTATAAATTTGCAAGT..................................................................................................	20	1	7.00	7	0	1	0	0	0	0	6	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAA....................................................................................................	20	1	7.00	7	0	3	0	0	0	0	4	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAA........................................................................	20	1	6.00	6	0	5	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAAGTAAAACT............................................................................................	28	1	6.00	6	0	5	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAATCCGTAGTCAAAAGT.....................................................................	25	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................ATTACCATTTCT---------------AACAAGCTT.............	21	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
...................................................................................CACTTCC-----TCCTAATTGGCAATACGT........................................................................................................................................................................................................................	25	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................................................................................................ATAATCCGTAGTCAAAAGT.....................................................................	19	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
...................................................................................................AATTGGCAATACGTGTTT-------------GTATT..................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.............................................................................................................................................................................................................................ATTTGCAAGTAAAACTTTAGAT......................................................................................	22	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TAGATAATCCGTAGTCAAAAGT.....................................................................	22	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
........................................................GTACCCGCCTAGGTCAATTCAA---........................................................................................................................................................................................................................................................	22	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AAAACTTTAGATAATCCGTAGTCAAAA.......................................................................	27	1	4.00	4	0	3	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TTATATGTTTATAAATTTGCAAGTA.................................................................................................	25	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
...............................................................................................................GTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------.......................................................................................................................................	22	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATCCGTAGTCAAAAGTTTATATAAAA...........................................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.................................CTACTGCTTTCTTTGAGGCCAAG.................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	2	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTAAAACTTTAGATAATCCGTA..............................................................................	22	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................................ATAAATTTGCAAGTAAAACTTTA.........................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AAAACTTTAGATAATCCGTAGT............................................................................	22	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..............................................................................................................................................................................................................................................TAGATAATCCGTAGTCAAAA.......................................................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAAGTA.................................................................................................	23	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAAGTGAATGTTAATTACC...........................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................AACTTTAGATAATCCGTAGTCAAAA.......................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTATATAAAAGTGAATGTT..................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................A---GGCACTTCC-----TCCTAATTGGCAATACGT........................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................................................................................................................AAAACTTTAGATAATCCGTAGTCA..........................................................................	24	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................AAAACTTTAGATAATCCGTA..............................................................................	20	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................ATAAAAGTGAATGTTAATTAC............................................	21	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.................................CTACTGCTTTCTTTGAGGCC....................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TAATTACCATTTCT---------------AACAAGCTT.............	23	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................AGATAATCCGTAGTCAAAAGT.....................................................................	21	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.....................................................................................................................................................................................................................................GTAAAACTTTAGATAATCCGTAGT............................................................................	24	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................................................AACTTTAGATAATCCGTAGT............................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..............................................................................................................CGTGTTT-------------GTATTTCTAAA-TG.........................................................................................................................................................................................	20	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAAGTAA................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATAATCCGTAGTCAAAAGTT....................................................................	20	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................ATGTTTATAAATTTGCAAGTAAAACT............................................................................................	26	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AAAACTTTAGATAATCCGT...............................................................................	19	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
....................................................................................................ATTGGCAATACGTGTTT-------------GTAT...................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................ATACTACTGCTTTCTTTGAGGC.....................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TAATTACCATTTCT---------------AACAAGCT..............	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................TATATGTTTATAAATTTGCAAGT..................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAAG...................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................................................................................................AATTGGCAATACGTGTTT-------------GTAT...................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................TTCTAAA-TGATT-----------------------------------------------AAATTTCAAAAATTT........................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................ACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------AA.....................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................AATTGGCAATACGTGTTT-------------GTATTT.................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................TATAAATTTGCAAGTAAAACT............................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................AATTGGCAATACGTGTTT-------------GTA....................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................TATATAAAAGTGAATGTTAAT...............................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................AATTACCATTTCT---------------AACAAGCTT.............	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTAAAACTTTAGATAATCCGTAGTCAAAA.......................................................................	29	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
....................................CTGCTTTCTTTGAGGCCAAGGT...............................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................AGATAATCCGTAGTCAAAAG......................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................TTGAGGCCAAGGTACCCGC.........................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TATATGTTTATAAATTTGCAAG...................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................GCACTTCC-----TCCTAATTGGC...............................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................CTTCC-----TCCTAATTGGCAATACGT........................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................TTTAGATAATCCGTAGTCAAAAGT.....................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................AGATAATCCGTAGTCAAAA.......................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AATCCGTAGTCAAAAGTTT...................................................................	19	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTAAAACTTTAGATAATCC.................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.......CTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	19	2	2.00	4	0	4	0	0	0	0	0	0	0	0	0
.........................................TTCTTTGAGGCCAAGGTACCCGCCTA......................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................ATATAAAAGTGAATGTTAATTACC...........................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATAATCCGTAGTCAAAAG......................................................................	19	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................GATAATCCGTAGTCAAAAGTTT...................................................................	22	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................TTTGCAAGTAAAACTTTAGAT......................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................GGTCAATTCAA---GGCACTTCC-----TCCT......................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TAGATAATCCGTAGTCAAAAGTTT...................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TTATATAAAAGTGAATGTTAATTA.............................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................AAAACTTTAGATAATCCGTAGTC...........................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.............................AATACTACTGCTTTCTTTGA........................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0
....................................................................................................................................ATTTCTAAA-TGATT-----------------------------------------------AAATTTCAAAAATTT........................................................................................................................	29	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATGTTTATAAATTTGCAAGTA.................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................................CAAGTAAAACTTTAGATAATCCGT...............................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................GTTTATATAAAAGTGAATGTTAATTACC...........................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..............................ATACTACTGCTTTCTTTGAGGCCAA..................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................................................................................................ATTGGCAATACGTGTTT-------------GTATTT.................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTACCATTTCT---------------AACAAGCT..............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................ATACTACTGCTTTCTTTGAGGCCAAG.................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................TTGCAAGTAAAACTTTAGATAATCCGT...............................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAATCCGTAGTCAAAA.......................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................ATAAAAGTGAATGTTAATTA.............................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCA.....................................................................................................	19	2	1.50	3	0	3	0	0	0	0	0	0	0	0	0
..................AGCTTTGCCTTAATACTACTGCTTTCTT...........................................................................................................................................................................................................................................................................................	28	2	1.50	3	0	3	0	0	0	0	0	0	0	0	0
..CAAATCTTCAAGACCCAGCTT..................................................................................................................................................................................................................................................................................................................	21	3	1.33	4	0	1	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................TAAAAGTGAATGTTAATTACCATTT.......................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TATATGTTTATAAATTTGCAAGTAAAAC.............................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................CAGCTTTGCCTTAATACTACTGCT................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................CACTTCC-----TCCTAATTGGCAA.............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGAATGTTAATTACCATTTCT---------------AACA..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................GGCACTTCC-----TCCTAATTGG................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAATCCGTAGTCAAAAG......................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................CTTCC-----TCCTAATTGGCAATACGTGTT.....................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTTCAAAAATTTATATGTTTATA.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAATCCGTAGTC...........................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................ATTTCAAAAATTTATATGTTTATAAAT..........................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTTATAAATTTGCAAGTAA................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GTCAAAAGTTTATATAAAAGTG........................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTTTATAAATTTGCAAGT..................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATTTGCAAGTAAAACTTTAG........................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................CTTTGAGGCCAAGGTACCCGCCTAGGT...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................ATAAAAGTGAATGTTAATTACC...........................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................CTTTAGATAATCCGTAGTCAA.........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................ACTTCC-----TCCTAATTGGCAAT............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................ACTGCTTTCTTTGAGGCCAAGGT...............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................CTTTGAGGCCAAGGTACCCGC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TACCATTTCT---------------AACAAGCTTATA----------	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATAATCCGTAGTCAAAAGTT....................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................GGTACCCGCCTAGGTCAATTCAA---GGCAC...................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................TTTGAGGCCAAGGTACCC...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................TTCAA---GGCACTTCC-----TCCTAATTGGCAATAC..........................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................TGGCAATACGTGTTT-------------GTATT..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....ATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TAAAAGTGAATGTTAATTACCAT.........................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................TAATTGGCAATACGTGTTT-------------GTA....................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................TACGTGTTT-------------GTATTTCTAA.............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATTACCATTTCT---------------AACAAGCT..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAAATTTATATGTTTATAAATT.........................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................GTACCCGCCTAGGTCAATTCA............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
TTCAAATCTTCAAGACCCAGCTT..................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................TACGTGTTT-------------GTATTTCTAAA-TG.........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AATTACCATTTCT---------------AACAAGCTTA............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AAGTAAAACTTTAGATAATC..................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................GCACTTCC-----TCCTAATTGGCAATACGT........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................TAAAACTTTAGATAATCCGTAGTCAAAA.......................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................ACTTCC-----TCCTAATTGGCAATACGTGTTT-------------.......................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................GGTACCCGCCTAGGTCAATT..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTTAATTACCATTTCT---------------AACAAGCT..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AATTTCAAAAATTTATATGTTTATA.............................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................CTTTGAGGCCAAGGTACCCGCCTAGGTC..................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................GGTACCCGCCTAGGTCAATTCAA---GG......................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TCAA---GGCACTTCC-----TCCTAATTGGCA..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................CGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------AA.....................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................CTTCC-----TCCTAATTGGCAATACGTGT......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TTCC-----TCCTAATTGGCAATACGTGTT.....................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................TACTACTGCTTTCTTTGAGGC.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........CAAGACCCAGCTTTGCCTTA...........................................................................................................................................................................................................................................................................................................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AAGTAAAACTTTAGATAATCC.................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GCTTTCTTTGAGGCCAAGGTACCCGC.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTTATAAATTTGCAAGTAAAACT............................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAAGTTTATAT...............................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................TATAAAAGTGAATGTTAATTA.............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTTATAAATTTGCAAGTA.................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................ACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------.......................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................ACCCGCCTAGGTCAATTCAA---........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAACTTTAGATAATCCGTAGTCAAAA.......................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................GGCACTTCC-----TCCTAATTGGCAATAC..........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TTGAGGCCAAGGTACCCGCCTAGGT...................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................C-----TCCTAATTGGCAATACGTGTTT-------------GTATTT.................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TTATATGTTTATAAATTTGCAAGT..................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAAGTGAATGTTAATTAC............................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................CAA---GGCACTTCC-----TCCTAATTGGC...............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTGCAAGTAAAACTTTAGAT......................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................CTAGGTCAATTCAA---GGCACTTCC-----..........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................ACTGCTTTCTTTGAGGCCAAG.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................TAATACTACTGCTTTCTTTGAGGCC....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................AA---GGCACTTCC-----TCCTAATTGGCA..............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AACTTTAGATAATCCGTAGTC...........................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................AATGTTAATTACCATTTCT---------------A.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATGTTTATAAATTTGCAA....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................GGTCAATTCAA---GGCACTTCC-----TCCTAATT..................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................ATACTACTGCTTTCTTTGAGGCC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAACTTTAGATAATCCGTA..............................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TATATGTTTATAAATTTGCAA....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................ACCCGCCTAGGTCAATTCAA---GG......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAAGTTTATA................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................TAATACTACTGCTTTCTTTG.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTATATAAAAGTGAATGTTAAT...............................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................TTTCTAAA-TGATT-----------------------------------------------AAATTTCAAAAAT..........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................CACTTCC-----TCCTAATTGGCAATA...........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TTTGCCTTAATACTACTGCTTTCTTTGA........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................ATTGGCAATACGTGTTT-------------GTA....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................C-----TCCTAATTGGCAATACGTGTT.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................ATACTACTGCTTTCTTTGA........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATAATCCGTAGTCAAAA.......................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................AAGGTACCCGCCTAGGTCAATTCAA---........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AATCCGTAGTCAAAAGTTTATATAAAAG..........................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAA.........................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................CGTGTTT-------------GTATTTCTAAA-TGAT.......................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TGTTTATAAATTTGCAAGT..................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................AATGTTAATTACCATTTCT---------------AACAAGC...............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................ATTCAA---GGCACTTCC-----TCCTAA....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................ATACTACTGCTTTCTTTGAG.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................CCTAATTGGCAATACGTGTTT-------------GTATTTCT...............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................AAATTTGCAAGTAAAACTT...........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................CACTTCC-----TCCTAATTGGCA..............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................GTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------AA.....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................ACTGCTTTCTTTGAGGCC....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AAAGTGAATGTTAATTACC...........................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCAAGTAAAACTTTAGATAATCCGTAGTC...........................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................CCTAATTGGCAATACGTGTTT-------------GT.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................A---GGCACTTCC-----TCCTAATTG.................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................TACGTGTTT-------------GTATTTCTAAA-TGAT.......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................ACCCGCCTAGGTCAATTCAA---GGCA....................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....ATCTTCAAGACCCAGCTTTGCC..............................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................CTTAATACTACTGCTTTCTTTGAGGCC....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................ATTCAA---GGCACTTCC-----TCCTAATTGGC...............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CCGTAGTCAAAAGTTTATATAA.............................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................GCAATACGTGTTT-------------GTATTT.................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AAGTAAAACTTTAGATAATCCGTAGTCAA.........................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTTTATAAATTTGCAAGTA.................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGTTTATATAAAAGTGAATGT...................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................ATCCGTAGTCAAAAGTTTATATA..............................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATATGTTTATAAATTTGCAAGTAAA...............................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTATATAAAAGTGAATGTTA.................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................AA-TGATT-----------------------------------------------AAATTTCAAAAATTT........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................TTGAGGCCAAGGTACCCGCCTAGGTC..................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AATTTGCAAGTAAAACTTTAGATAATCCGT...............................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................TTAGATAATCCGTAGTCAAAAGTTT...................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTAGATAATCCGTAGTCAAAAGTTT...................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
TTCAAATCTTCAAGACCCAGCTTTGC...............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................ATTGGCAATACGTGTTT-------------GT.....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................CTGCTTTCTTTGAGGCCAAG.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GCTTTCTTTGAGGCCAAGGTACC............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AGATAATCCGTAGTCAAAAGTTTAT.................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATAATCCGTAGTCAAAAGTTTATATAAA............................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................TGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------AAA....................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCAAGTAAAACTTTAGATAATCCGTAGT............................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................CTTTCTTTGAGGCCAAGGTACCCGC.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATGTTTATAAATTTGCAAG...................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................ATTCAA---GGCACTTCC-----TCCTAAT...................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................GCTTTCTTTGAGGCCAAGG................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ATAAATTTGCAAGTAAAACT............................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................ACTACTGCTTTCTTTGAGGCCAAG.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGTTTATATAAAAGTGAAT.....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AACTTTAGATAATCCGTAGTCAAAAGT.....................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................ACTTTAGATAATCCGTAGTCA..........................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................TTGCAAGTAAAACTTTAGATAATC..................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTAAAACTTTAGATAATCCGTAGTCA..........................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................AGGTACCCGCCTAGGTCAATTCAA---........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................GTACCCGCCTAGGTCAATTCAA---GGCA....................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................C-----TCCTAATTGGCAATACGTGTTT-------------GT.....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................GTACCCGCCTAGGTCAATTCAA---GG......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................TGAGGCCAAGGTACCCGCC........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................GGCACTTCC-----TCCTAATTG.................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................CTAGGTCAATTCAA---GGCACTTCC-----TCCT......................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATGTTAATTACCATTTCT---------------AACAAGCTT.............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................TACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------.......................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................CAA---GGCACTTCC-----TCCTAATT..................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................TTCTAAA-TGATT-----------------------------------------------AAATTTCAAA.............................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................CTTTCTTTGAGGCCAAGGTACCCGCCTA......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AATACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------.......................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................AATTGGCAATACGTGTTT-------------GTATTTCTA..............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................GCACTTCC-----TCCTAATTGGCA..............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAACTTTAGATAATCCGTAGTCA..........................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCAAAAATTTATATGTTTATA.............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................ACTACTGCTTTCTTTGAGGCC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................TACGTGTTT-------------GTATTTCTAAA-TGATT-----------------------------------------------A......................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TTATATAAAAGTGAATGTTAATTACC...........................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGTAAAACTTTAGATAATCCGTAGT............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................CTTCC-----TCCTAATTGGCAATACGTGTTT-------------GT.....................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................ACTACTGCTTTCTTTGAGGCCAAGGT...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................TCC-----TCCTAATTGGCAATACGT........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGCAAGTCTTCAAGACCCAGCTGTGTCTTAATACCTCTGCTTTCTTCGAGGCCAGGATTCCTGTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCAATATTTCAAAACCCAGCTATGTCTCAACACTTCTGCTTTCTTTGAGGCCAAGATACCCGCTTAGGTCAAGGGC---CA--------------------------TAATTCTTAGCTGTTGTTTAAGG--------------------------------------------------------------------------------------------------------------------------------TGCTGCTTACAATAAATAT---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCAATTCTTCAAGACCCAGCTATGCCTCAATACTACTGCTTTCTTCGAGGCCAAGATACCTGCCTAAGTCTATAAAAACGAGCAACCCG-----TAGTTATTGGATGTTGTGGAAT-------------GTTCTTGCTTA-TA---------------------------------------GT------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCAACTCTTCAAGACCCAGCTGTGTCTCAACACTAGTGCGTTCTTCGAGGCCAAGATCCCAGTTTAAGTGAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCAAGTGTTCAAGACCCAGCTGTGCCTCAATACCAGTGCTTTCTTCGAGGCCAAGATTCCCGTTTAAGTCTTTTAAA---AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCAATTCTTCAGAACTCAGCTCTGTCTTAACACTTCTGCTTTCTTCGAGGCCAAGATTCCCGTCTAATTTAATAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCAGCAGTTCACCACCCAGCTGTGCCTCAATCCCAGCGCCGTCTATGAGGCCAAAGTACCCGTTTAGGCTAAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCAG---TACAAGACCCAGTTGTGCCTCAACCCCGATGCCTTCCACGAGGTTCAAGTTCCTGTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................CCACGAGGTTCAAGTTCCTGC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................GTTGTGCCTCAACCCCGATGCCTTC.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
............................................CACGAGGTTCAAGTTCCTGT.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................GCCTCAACCCCGATGCCTTC.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....G---TACAAGACCCAGTTGTGC...............................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0
.............GACCCAGTTGTGCCTCAACCCCGATGC.................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
.....................TGTGCCTCAACCCCGATGCC................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
...AG---TACAAGACCCAGTTGTG................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0
....G---TACAAGACCCAGTTGTGCCTCAACCCC......................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0

droBip1

TCCAG---TTCAAGACCCAGTTGTGCCTCAACCCCGAAGCCTTCCACGAGGTTCAAGTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGACGCGGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAAAATA---TAGAAATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.GACGCGGTACAGAACAGA......................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.........ACAGAACAGAGCTATGCCT.............................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.........ACAGAACAGAGCTATGCCTC............................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................GGCCCAAATACCCGTTTAGA....................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.GACGCGGTACAGAACAGAGCTATGCCTC............................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.........ACAGAACAGAGCTATGCCTCAATCCGA.....................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................ATGCTTTTTATGAGGCCCAAATACCC...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CAGAACAGAGCTATGCCTC............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................AGAGCTATGCCTCAATCCGAATGCTT...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GACGCGGTACAGAACAGAGCT...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.GACGCGGTACAGAACAGAGCTATGC...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........CAGAACAGAGCTATGCCTCAAT.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GACGCGGTACAGAACAGAGCTATG................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................TATGAGGCCCAAATACCCGTTTAGA....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........ACAGAACAGAGCTATGCCTCA...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CAGAACAGAGCTATGCCTCAATCCGAA....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................AGCTATGCCTCAATCCGAAT...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CAGAACAGAGCTATGCCT.............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CTCAATCCGAATGCTTTTTATGA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
TGACGCGGTACAGAACAG.......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................GCTATGCCTCAATCCGAAT...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGACGCGGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAAAATA---TAGAAATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........ACAGAACAGAGCTATGCCT.............................................................................................................................................................................................................................................................................................................	19	1	7.00	7	7	0	0	0	0	0
.......GTACAGAACAGAGCTATGCCT.............................................................................................................................................................................................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
.GACGCGGTACAGAACAGAGCTATGCCTC............................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	3
TGACGCGGTACAGAACAGAGCTATGCCT.............................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.GACGCGGTACAGAACAGAGCTAT.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.GACGCGGTACAGAACAGAGCTATGC...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................GCTATGCCTCAATCCGAATGC.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........ACAGAACAGAGCTATGCCTC............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

GGCA----TACAAGACTTTGGTTTGTCTTAATTCGTCGGCCTTCTATGAGGCACAGATACCAGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
GGCA----TACAAGACTTTGGTTT.................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0
...............CTTTGGTTTGTCTTAATTCGTC....................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0
...............CTTTGGTTTGTCTTAATTCGTCGGC.................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
............................TAATTCGTCGGCCTTCTATGAG.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........................................TTCTATGAGGCACAGATACC............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........................................CTTCTATGAGGCACAGATACCA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
............................TAATTCGTCGGCCTTCTATGAGGC.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
........................GTCTTAATTCGTCGGCCC...............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...............................TTCGTCGGCCTTCTATGAGG......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................CTTAATTCGTCGGCCTTCTATGAGG......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...A----TACAAGACTTTGGTTTGTC..............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................CTTAATTCGTCGGCCTTCTATGAGGCACA..................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
..............................ATTCGTCGGCCTTCTATGAG.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................TTAATTCGTCGGCCTTCTATGAGGC.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...............CTTTGGTTTGTCTTAATTCGTCGGCC................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.................................CGTCGGCCTTCTATGAGGCACAGA................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...............CTTTGGTTTGTCTTAATTCGTCGGCCTT..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..........................CTTAATTCGTCGGCCTTCTATGAG.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........................TTAATTCGTCGGCCTTCTATGAG.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................GTCTTAATTCGTCGGCCTT..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
................TTTGGTTTGTCTTAATTCGTC....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0

droVir3

CACAAAATCGGTCTACCCGTGTTTGCCTCAAGCCCGAAGCCTTTGAAATGGCTCAGGTGGTGGTGTAAATTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................CTTTGAAATGGCTCAGGTGGTGGT.........................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................TTTGAAATGGCTCAGGTGGTGGTGTA......................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................CTTTGAAATGGCTCAGGTGGT............................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........CGGTCTACCCGTGTTTGC...............................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
.......................................CCTTTGAAATGGCTCAGGTGGT............................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACCCGTGTTTGCCTCAAGCCCGA....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GGTCTACCCGTGTTTGCCTCAAGCCC......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CCTTTGAAATGGCTCAGGTGGTGGTGTA......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AAATGGCTCAGGTGGTGGT.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................AGCCTTTGAAATGGCTCAGGTGGTG...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GGCTCAGGTGGTGGTGTAAA....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AGCCTTTGAAATGGCTCAGGTGGT............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AGCCTTTGAAATGGCTCAGGTGGTGGT.........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCCTTTGAAATGGCTCAGGTGGTGGC.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CTTTGAAATGGCTCAGGTGGTGGC.........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGAAATGGCTCAGGTGGT............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TTTGAAATGGCTCAGGTGGTGGT.........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTCAAGCCCGAAGCCTTTGAAAT........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCCTTTGAAATGGCTCAGGTGGTG...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCCTTTGAAATGGCTCAGGTGGT............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CCTTTGAAATGGCTCAGGT...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCCTTTGAAATGGCTCAGGTGGTGGTGT.......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCCTTTGAAATGGCTCAGGTGGTGGT.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATGGCTCAGGTGGTGGTGT.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dsi_26696

2r:14756408-14756557 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads