ID:dsi_26691 |
Coordinate:3l:11495607-11495756 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
five_prime_UTR [3l_11495794_11495896_-]; CDS [3l_11495757_11495793_-]; exon [3l_11495757_11495896_-]; intron [3l_11495406_11495756_-]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AATCAGTGAAAATATGTCAATTTTCTCCAAATCGCTGCTCTTTCGTGGGGGTAAGCCAGTATATCGTATATAGCTCGTTCATTCCATATGGTTGTTTCTAAATGACTTTTCAAATAACAAATAAAGAACTCGTATTAAGACCTATTTATATTGTTTTAAATTTGAAAATAATGATAAGAAAATAGGAAATATATCTACTCGATGTATATGAAACATGTGCATTTCTATTTCTGTACACCTTGAAATTTTT **************************************************.......((((....((((((..((.(((..(((..(((.(((((............((((((((((((((((((....((.......))....))))).)))))....))))))))))))).))).)))))).))..)))))).)))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................TGAATTTTCAGATAACAAATAAG............................................................................................................................. | 23 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 |
| ....................................GCTCTTTAGTGGGGG....................................................................................................................................................................................................... | 15 | 1 | 9 | 0.22 | 2 | 0 | 2 | 0 | 0 |
| ...................................................................ATATAGCTCGTTCTTT....................................................................................................................................................................... | 16 | 1 | 6 | 0.17 | 1 | 0 | 1 | 0 | 0 |
| .....................................CTCTTTCGTGGGGGA...................................................................................................................................................................................................... | 15 | 1 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 |
| .................................CCTACTCTTTCGTGGGGGA...................................................................................................................................................................................................... | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 |
| ..........................................................................................................................AAAGAACTCGTATTTA................................................................................................................ | 16 | 1 | 14 | 0.07 | 1 | 0 | 0 | 0 | 1 |
| ....................................................................TATAGCTCGTTCTCTCC..................................................................................................................................................................... | 17 | 2 | 16 | 0.06 | 1 | 0 | 1 | 0 | 0 |
|
TTAGTCACTTTTATACAGTTAAAAGAGGTTTAGCGACGAGAAAGCACCCCCATTCGGTCATATAGCATATATCGAGCAAGTAAGGTATACCAACAAAGATTTACTGAAAAGTTTATTGTTTATTTCTTGAGCATAATTCTGGATAAATATAACAAAATTTAAACTTTTATTACTATTCTTTTATCCTTTATATAGATGAGCTACATATACTTTGTACACGTAAAGATAAAGACATGTGGAACTTTAAAAA
**************************************************.......((((....((((((..((.(((..(((..(((.(((((............((((((((((((((((((....((.......))....))))).)))))....))))))))))))).))).)))))).))..)))))).)))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................ACCGATAAGTTTATTGGTTATTT............................................................................................................................. | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ..............................................................................AGTAAGGTAGACCAACGAAGGT...................................................................................................................................................... | 22 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| ........................................................GGCATATAGCATCTATCG................................................................................................................................................................................ | 18 | 2 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 |
| ......................................AGAAAGTACCCCCATT.................................................................................................................................................................................................... | 16 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 |
| ........................................................GGCATATAGCATCGATCGAG.............................................................................................................................................................................. | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 |
| ..........................GGTTTAGCAATGGGAAAGCAC........................................................................................................................................................................................................... | 21 | 3 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 |
| ...........................................................................................................AAAGTTTATTGGTTATTT............................................................................................................................. | 18 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 |
| .......CTTTTGCACAGTTAAAAGAGT.............................................................................................................................................................................................................................. | 21 | 3 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 |
| ..........................................................................................................AAAAGTTTGTTGTCTATT.............................................................................................................................. | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:22 AM