ID:

dsi_26678

 Coordinate:

3l:15982347-15982519 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15982200_15982346_-]; exon [3l_15980713_15982346_-]; CDS [3l_15982520_15984703_-]; exon [3l_15982520_15984703_-]; intron [3l_15982347_15982519_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATATGGCGGCTTTAAGAGCGACAGAAACGATAGCTTCAATGCCAATAAGGTAGGTGTGCTGGTTTTATTAGAAGGGGTGTGACTATTTATCTTTCTATCTATTTATGCAATCTAAACTGTTTTTGCTTATGGGTTTGGCATAGTGAATAACATGAATTTTCTAACTGATAAGGCTTTGCAACCAGTGTATAATCTTATATTTAAATATCTTCCCGGAAACAGCAGCAACAACCGGTGTGGGGCAGGAAACCGCAACTGATGTCGGAGGATAG
**************************************************.(((((.(((.........((((((((.............)))))))).........))))))))..((((((((((((((.((((.(((((.((.....))))).....)).)))).)))))((...))....((((((......))))))............)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................................................................................................................................GCAACTGATGTCGGAGGA... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCAGCAACAACCGGTGTGGGGG............................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0
..............AAGAGCGACAGAAACGATAGCTTC........................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
....................GACAGAAACGATAGCTTCAATGCCA.................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................AGCAACAACCGGTGTGGGGC............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATAAGCAGCAACAACCGGTGTG................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0
.........GCTTTAAGAGCGACAGAAACGAT................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TAACTGATAACCGTTTGCAACCA........................................................................................ 23 3 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................ACCGGTGTGAGCCAGGAAA....................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0
..........................................CCAATAGGGAACGTGTGCTGG.................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0
...............................................AAGGTAGGTGTGCTAGAT................................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................AGCAGCAACAACGGATGTGG................................ 20 2 3 0.33 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................AACCGGTGTGGAGCA............................ 15 1 4 0.25 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................TGATGAGGCTTTGCA............................................................................................ 15 1 6 0.17 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................GGGCGGGAATCCGCGACTGA............. 20 3 8 0.13 1 0 0 0 0 0 1 0 0
..................................................................................................................................TTGGTTTGGTAGAGTGAATAA.......................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................AAGAACCGGTGTGGAGC............................. 17 2 10 0.10 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................AACAGCAGCAACAACC....................................... 16 0 14 0.07 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CCTGAAACCGCAACGGATG........... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CTATACCGCCGAAATTCTCGCTGTCTTTGCTATCGAAGTTACGGTTATTCCATCCACACGACCAAAATAATCTTCCCCACACTGATAAATAGAAAGATAGATAAATACGTTAGATTTGACAAAAACGAATACCCAAACCGTATCACTTATTGTACTTAAAAGATTGACTATTCCGAAACGTTGGTCACATATTAGAATATAAATTTATAGAAGGGCCTTTGTCGTCGTTGTTGGCCACACCCCGTCCTTTGGCGTTGACTACAGCCTCCTATC
**************************************************.(((((.(((.........((((((((.............)))))))).........))))))))..((((((((((((((.((((.(((((.((.....))))).....)).)))).)))))((...))....((((((......))))))............)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.........................................................................................................................................................ACTTAAACGATTGACT........................................................................................................ 16 1 6 0.33 2 2 0 0 0 0
.....CCGCCGTGACTCTCGCTGTCTT...................................................................................................................................................................................................................................................... 22 3 8 0.25 2 2 0 0 0 0
.....................................................................................................................................................................................................................GGCCTTTGTCGTCGCTGTTGT....................................... 21 2 6 0.17 1 0 1 0 0 0
................................................................................................................................................................AGATTTACTATTCCG.................................................................................................. 15 1 11 0.09 1 1 0 0 0 0
...........................................................................................................CGTTAGGCTTGACAAAATCG.................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0
..........................................................................................................................................................................................................................................................GGAGTTGACTACAGCCAGC.... 19 3 12 0.08 1 0 0 0 1 0
..................................................................................................................................................................................................................AAGGGCCTGTGGCGTCG.............................................. 17 2 15 0.07 1 0 0 0 0 1
................................TCGAAGGTATGGTTATT................................................................................................................................................................................................................................ 17 2 18 0.06 1 0 1 0 0 0
..........................................................................................................................................................................................................................................CCACACGCCGTCCTTAG...................... 17 2 19 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 12:10 AM