ID:

dsi_26670

 Coordinate:

3r:4465622-4465771 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4465522_4465621_-]; CDS [3r_4465522_4465621_-]; intron [3r_4465622_4466114_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTGCTCTGTTTGTTTTGGGTCTGTGTGTGCTTATTGTCTGTCGGTGGCGTATACGTAATGTGAGCTGGGGAAAAGTTGGCCATCAATCCTGTGTTTTGACTCTGCCTTTTCTAAAGGGTGTTTCGAATCCGTTCTTTTTGAAGGTATATAAGGTTGTTAGCTTCAGTTTATTATCATTATTCTTTTATGACACATTCAGGCTACAGTCGACAAACTGGTGGCCAAAGCGAACGTTTCTGCCGTCCTTGG
**************************************************.....((((((((((((((.........(((...(((((.(((((.........((((((......((((.......)))).........))))))))))).)))))...)))))))))))....))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 SRR902009
testis
 M023
head
 SRR1275483
Male prepupae		 SRR1275487
Male larvae
...................................................ATAGGGAACGTGAGCTGGGG................................................................................................................................................................................... 20 3 5 12.40 62 45 13 0 0 4 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCAAGGCTACAGTCGACAAACTGGT.............................. 25 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAAGGCTACAGTCGACAAACTGGT.............................. 24 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTCGACAAACTGGTGGCC.......................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................................ATAGGGAATGTGAGCTGGGG................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGCGAACGTTTCTGCCGTCCT... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTACAGTCGACAAACTGGT.............................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TGCCTATTCTAAACGGTGTTCCGA........................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................TAGGTAACGTGAGCTGGG.................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................TAACGTGAGCTGGGG................................................................................................................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................ATAGGTAACGTGAGCTGGGT................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................GTAACGTGAGCTGGG.................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..............TTTGGATATGTGTGGGCTTATT...................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................TATAGGGAACGTGAGCTGG..................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CTACAGTCGACGATCTGA............................... 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 1
..................................................................................................................................................................................................ATTCATTCTACAGTCGACG..................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................TACGGAACGTGAGCTGG..................................................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................AATGTGAGCTGGGGT.................................................................................................................................................................................. 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TAACGTGAGCTGGGGT.................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GAATCCTTTCTTTCTGACG.......................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................ATATGGAACGTGAGCTGGG.................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCACGAGACAAACAAAACCCAGACACACACGAATAACAGACAGCCACCGCATATGCATTACACTCGACCCCTTTTCAACCGGTAGTTAGGACACAAAACTGAGACGGAAAAGATTTCCCACAAAGCTTAGGCAAGAAAAACTTCCATATATTCCAACAATCGAAGTCAAATAATAGTAATAAGAAAATACTGTGTAAGTCCGATGTCAGCTGTTTGACCACCGGTTTCGCTTGCAAAGACGGCAGGAACC
**************************************************.....((((((((((((((.........(((...(((((.(((((.........((((((......((((.......)))).........))))))))))).)))))...)))))))))))....))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
..................................................................................................................................................................................ATAAGAAAATACTGTGTAAGTC.................................................. 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................CCTCAAAGGTTAGGCAAGA.................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................................AGTCCGATGTCATCT....................................... 15 1 6 0.17 1 0 0 0 1 0
.............................................................................................CAAAGCTGAGACGGCAAGGA......................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0
.....................................................................................................................CCTCAAAGGTTAGGCAAG................................................................................................................... 18 2 7 0.14 1 0 0 1 0 0
....................................................................................................................................................................................................................................GCTTTCAAATACGGCAGGC... 19 3 18 0.06 1 0 0 0 0 1

Generated: 04/24/2015 at 08:34 AM