ID:

dsi_26665

Coordinate:

3l:8075480-8075712 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-7.2	-6.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAAAATCATAATATCCTGGCTGCCGCCCGACCTGCCAAATGGTGACATTGTGAGTATATTTTTGGGATACACCCCAGTATATGGGGGGAGTATATGGGGGGACATTATCATTGGATTATTGGTGAGGGCAGTCTGGACAAGGTCAGCCCTGTCAGGATCTATGCAAGCATTTGCAAAGTAATCTAAGTTATATTATTATTTGGCAAGGTCAGGATCCTCTGAAACTGCATTAAACTTATTCCTTAATTTATGAATTTTATCCCTCGACCCGTGATTTTTCAGACCGGCTACACCTTCTACATGTCCATGCTGGAGGGTGGACGCGAGGAGGG ****************************************************************************************************************************************************************************************************.....(((...(((((....)))))...)))....................**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	O002 Head	GSM343915 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries	SRR902009 testis
....................................CAGCTGGTGACATTGGGAGTA....................................................................................................................................................................................................................................................................................	21	3	1	1.00	1	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAACTTATTCCTTAATT....................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................ATCCTCTGAAACTGCATTAAACT................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATTTGGCAAGGTCAGGAT.....................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................................................GAAAGCAGTCTGGACAAGTTCA...........................................................................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................TTTGGCCAGGTAAGGATACTC.................................................................................................................	21	3	3	0.33	1	0	0	0	0	1	0	0	0	0
..............................................................................................................ATTGAATTATTAGTGAGG.............................................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................GTCAGAATCTATGCTAGAA...................................................................................................................................................................	19	3	10	0.20	2	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................TTGGCCAGGTAAGGATACTC.................................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0	0	0	0
............................................................................GGTTTCTGGGGGGAGTAT...............................................................................................................................................................................................................................................	18	3	20	0.15	3	0	0	0	0	0	0	3	0	0
...................................................................................................................................GTCTGGACAAGATCAG..........................................................................................................................................................................................	16	1	7	0.14	1	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................GCAGGACGGTGGACGCG.......	17	2	9	0.11	1	0	0	0	0	0	0	0	1	0
...............................................................................ATCTGGGGGGAGTATG..............................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1	0
...........................................................................CAGTAGATGTGGGGAGTTT...............................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

GTTTTTAGTATTATAGGACCGACGGCGGGCTGGACGGTTTACCACTGTAACACTCATATAAAAACCCTATGTGGGGTCATATACCCCCCTCATATACCCCCCTGTAATAGTAACCTAATAACCACTCCCGTCAGACCTGTTCCAGTCGGGACAGTCCTAGATACGTTCGTAAACGTTTCATTAGATTCAATATAATAATAAACCGTTCCAGTCCTAGGAGACTTTGACGTAATTTGAATAAGGAATTAAATACTTAAAATAGGGAGCTGGGCACTAAAAAGTCTGGCCGATGTGGAAGATGTACAGGTACGACCTCCCACCTGCGCTCCTCCC **********************************************************************************.....(((...(((((....)))))...)))....................****************************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
.......................................................................................................................................................................................................................................................................................AGTCTGGCCGATGGG.......................................	15	1	1	1.00	1	1	0	0	0	0	0
.........................................................ATAAAAACCCTATCTAGTGT................................................................................................................................................................................................................................................................	20	3	14	0.64	9	9	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AGAGTCTGGGCGATGT........................................	16	2	18	0.17	3	1	0	0	0	1	1
.........................................................ATAAAAACCCTATCT.....................................................................................................................................................................................................................................................................	15	1	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................ATAGAGAGCTGTGCACTGA........................................................	19	3	10	0.10	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................AGAGTCTGGCCGATGG........................................	16	2	10	0.10	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................GCCGAGGTGGAAGATGTTTA............................	20	3	10	0.10	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTGCCGAGGTGGAAGATGTT..............................	20	3	11	0.09	1	0	1	0	0	0	0

Generated: 04/24/2015 at 10:38 AM