ID:

dsi_26634

 Coordinate:

2l:18921419-18921568 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [2l_18921618_18921684_-]; CDS [2l_18921569_18921617_-]; exon [2l_18921569_18921684_-]; intron [2l_18921115_18921568_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATGAATAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGTGGAGGTAGTGCACTGTTCCCAATATCTGCTAGTCCAGAAAATTACACCTAAGATGTAAACTGTGCCGGCTTGGTCCTGGCGATCTCATCCAAGTGTTTTGAGGCTGCCTATCAGCACTTGTGGATCAGAGTGTCGTCAGTGGCACTTGGGTTTTTCCTGAATGAAATATTTACACAACACCCTGGGAAATTGTGTAATTTATGG
**************************************************.............................................(((((.(((...((((((........(((((((.((((((((((((((...(((...)))...))))))..)))))..)))..)))))))))))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 GSM343915
embryo
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
.............................................TGGGGGTAGAGCACTGTT........................................................................................................................................................................................... 18 2 2 10.50 21 16 4 0 1 0 0 0 0 0 0
............................................ATGGAGGTAGAGCACTATT........................................................................................................................................................................................... 19 3 10 5.80 58 0 0 52 0 6 0 0 0 0 0
.............................................TGGGGGTAGAGCACTGTTTC......................................................................................................................................................................................... 20 3 4 4.00 16 13 1 0 0 0 0 0 2 0 0
.................................................................................................................................................................ACTTGTGGATCGGAGTG........................................................................ 17 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..........................................CTGCGGGGGTAGAGCACTGTT........................................................................................................................................................................................... 21 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.............................................TGGGGGTAGAGCACTGT............................................................................................................................................................................................ 17 2 8 1.75 14 9 3 0 2 0 0 0 0 0 0
.................................................................................................................................................................ACTTGTGGATCGGAGT......................................................................... 16 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.............................................TGGGGGTAGAGCACTGTTT.......................................................................................................................................................................................... 19 3 16 1.31 21 18 1 0 2 0 0 0 0 0 0
..............................................................................................................................................................ATGACTTGTGGATCGGAGTG........................................................................ 20 3 4 1.25 5 4 1 0 0 0 0 0 0 0 0
..............................................GGGGGTAGAGCACTGTTTC......................................................................................................................................................................................... 19 3 11 1.18 13 6 5 0 2 0 0 0 0 0 0
...............................................GAGGTAGAGCACTGTT........................................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................TGGAGGTAGAGCACTGT............................................................................................................................................................................................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................CGTGGAGGTAGAGCACTGTTT.......................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................TTGCCTGGGTGTGGTCTGT............................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................GCCCTTTGCCTGGGTGTGGTCTGTGG.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................TTGGAGGTAGAGCACTGTT........................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................TGTGGGGGTAGAGCACTGTTT.......................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................GGGGGTAGAGCACTGTT........................................................................................................................................................................................... 17 2 8 1.00 8 1 3 0 2 0 0 0 0 0 2
.........................CTTTGCCTGGGTGTGGTCTGT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................GACTTGTGGATCGGAGT......................................................................... 17 2 12 0.92 11 10 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................CTTGTGGATCGGAGTG........................................................................ 16 1 4 0.75 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACTTGTGGATCGGAG.......................................................................... 15 1 6 0.67 4 4 0 0 0 0 0 0 0 0 0
............................................GTGGAGGTAGCGCACT.............................................................................................................................................................................................. 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACTTGTGGATCGGAGTGA....................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GACTTGTGGATCGGAGTG........................................................................ 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0
.........................................TCTATGGAGGTAGAGCAC............................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................TGGAGGTAGAGCACT.............................................................................................................................................................................................. 15 1 5 0.40 2 0 1 0 1 0 0 0 0 0 0
................................................................................................................................................................GACTTGTGGATCGGAGTGA....................................................................... 19 3 14 0.36 5 5 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTGTGGATCGGAGTG........................................................................ 15 1 6 0.33 2 2 0 0 0 0 0 0 0 0 0
................................................AGGTAGAGCACTGTT........................................................................................................................................................................................... 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...........................................ACTGGAGGTAGAGCACTGTT........................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................CACGTGTTTTGTGGCTGCTTAT............................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0
...........................................TATGGAGGTAGAGCACTATT........................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.................................................GGTAGAGCACTGTTTC......................................................................................................................................................................................... 16 2 20 0.25 5 2 2 0 0 0 0 0 0 0 1
............................................TTGGGGGTAGAGCACTGTT........................................................................................................................................................................................... 19 3 13 0.23 3 1 0 0 2 0 0 0 0 0 0
........................................................................................................................................ACGTGTTTTGTGGCTGCTTAT............................................................................................. 21 3 10 0.20 2 0 0 0 0 0 0 0 0 2 0
.............................................TGGAGGTAGAGCACTGATT.......................................................................................................................................................................................... 19 3 17 0.18 3 0 0 0 2 0 0 0 1 0 0
.............................................TGGAGGTAGAGCACTGTTTG......................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.............................................CGGAGGTAGAGCACTGT............................................................................................................................................................................................ 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTTGTGGATCGGAGT......................................................................... 15 1 12 0.17 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTTGTGGATCGGAGTGA....................................................................... 17 2 13 0.15 2 2 0 0 0 0 0 0 0 0 0
............................................ATGGAGGTAGAGCACTAT............................................................................................................................................................................................ 18 3 20 0.15 3 1 0 0 0 2 0 0 0 0 0
...................................................TAGTGCTCTGTTCCC........................................................................................................................................................................................ 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1
............................................GCGGGGGTAGAGCACTGTT........................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.............................................TGGAGGTAGAGCACTGA............................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0
.......AAGCTGCTGGTTCTGG................................................................................................................................................................................................................................... 16 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0
............................................TTGGAGGTAGAGCACTATT........................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................GTGGATCAGAATGTC...................................................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
............................................TTGGAGGTAGAGCACTG............................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0
...........................................ATTGGAGGTAGAGCACTGT............................................................................................................................................................................................ 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTACTTGTGGATCGGAGTG........................................................................ 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.............................GCCCGGGTAAGGTCTGTG........................................................................................................................................................................................................... 18 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
.............................................TGGAGGTAGATCACTG............................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................GGGGTAGAGCACTGTTTC......................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................................AGGTAGAGCACTGTTT.......................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................GGTAGGGCACAGTTCC......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................GAGGTAGAGCACTGAT........................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTACTTATTCGACGACCAAAACCGGGAAACGGACCCACACCAGACACCTCCATCACGTGACAAGGGTTATAGACGATCAGGTCTTTTAATGTGGATTCTACATTTGACACGGCCGAACCAGGACCGCTAGAGTAGGTTCACAAAACTCCGACGGATAGTCGTGAACACCTAGTCTCACAGCAGTCACCGTGAACCCAAAAAGGACTTACTTTATAAATGTGTTGTGGGACCCTTTAACACATTAAATACC
**************************************************.............................................(((((.(((...((((((........(((((((.((((((((((((((...(((...)))...))))))..)))))..)))..)))))))))))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
................................................................................................................................AGAGTAGGTGCCCAAATC........................................................................................................ 18 3 20 0.25 5 5 0 0 0 0
............................................................GAAGGGTTATAGACG............................................................................................................................................................................... 15 1 8 0.13 1 0 0 1 0 0
...............................................................................................................................................................................................................ACTTTAGATATGTGTTGT......................... 18 2 20 0.10 2 0 2 0 0 0
......................................................ACGTGACAGGGGTTA..................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 1 0
...............................................................................................................................................AACTCCCACGGATGGTC.......................................................................................... 17 2 13 0.08 1 0 1 0 0 0
...........................................................................................................................................TCAAACCTCCGACGGATT............................................................................................. 18 3 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................................TGTGCTTTGGGACCCTTAA.............. 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18921369-18921618 - dsi_26634 AATGAA--------------------TAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTGTTCCC---AATATCTGCTAGTCCAGAAAATTACACCTAAGA--TGTAAA------------CTGTGCCG-------GCTT-----------GGTCCTGGCGATCTC-ATCCAAGTGT---TTT--------GAGGCTGCCT------ATCAGCACTTGT-----------GGATCAG-AG-TGTCGTCAGTGGCACT--TGGG-TTTTTCCTGAATGAAAT------ATTTACACAACACCCTGGG-AAATTGTGTAATTT---------ATGG
droSec2 scaffold_7:3002308-3002543 - AATGAA--------------------TAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCAATA------------TCTGCTAGTCCAGAAAATTACACCTAAGA--TGTAAA------------CTCTG------------CC-----------GGTCCTGGCGATCTC-ATCCAAGTGT---TTT--------GAGGCTGCCT------ATCAGTACTTGT-----------GGATCAT-AG-TGTCGTCAGTGGCACT--TGGG-TTTTTCCTGAATGAAAT------ATTTACACTGCACCCTGGG-AAATTGTGTAATTT---------ATGG
dm3 chr2L:19386041-19386136 - AATGAA--------------------TAAGCTGCTGATTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTCGTTTCCCGAATATCAACTAGTTCAGAAAATTAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:4908690-4908908 + AATGAA--------------------TAAGCTGCTGGTCTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTGTTCC----GAAATAAGCTAATCCAGAGAATTGCACCTAAGA--TGTAGC-------------------------------------------------------TG-ATCCAA-TTT---TTC--------GAGACTGCCT------ATCAGTGCA-GT-----------GGATCGC-AG-TGTCGTCAGTGGCACT--T-GT-TTTTCCCTGAATGAAAT------ATTTACACAACACCCTG---AAATTGTGTAATTT---------ATGG
droYak3 2R:5883852-5884100 - AATGAA--------------------TAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTGTTCC----AAAATCAACTTTTCCCGAAAATTACACCTAAGA--TGTAAC------------CAGTGCCG-------GCTT-----------GGTCCTGTCGATCTG-ATCCAAGTTT---TTT--------GAGGCTGCCT------ATCAGTGCTTGT-----------GGATCAG-TG-AGTCGTCAGTGGCACT--TGGT-TTTTTCCTGAATGAAAT------ATTTACACAACAACCCGGG-AAATTGTGTAATTT---------ATGG
droEug1 scf7180000409463:1702114-1702379 - AATGAA--------------------TAAGCTGCTGATTTTGGCCCTCTGTCTGGGTGTGGTCTGT------GGAGGTATTGAAATTTTCC----TCAATTGAAAGCTCCTTAAAAATGCAAACAATATATGTTAA------------GAGTGTTT-------TTGA-----------AATCCTGCGAATCTG-GCAAAAGTTT---TTT--------GAGGCTGCTT------ATCAGCTGCT-----TATCTGCTGCTTCCG-AG-TGTCGTCAGCGACTTT--TGGG-TTTTTCCTGAATGAAAT------TTTTACACAACACCTTGGG-AAATTGTGTAATTTTCTGAGAATATAG
droBia1 scf7180000302422:4252681-4252909 + AATGAA--------------------TAAGCTGCTGATTCTGGCCCTTTGCCTGGGCGTGGTCTGC------GGAGGTAGTGAAATTTTCC----GAACTCAAATAATCCTGAAAATTGCAAATGAGG--TGTAAA------------TAGTGCTC-------TCTG-----------GCTCCTGTGGATGTG-GTCCGAGTTT-TGTTT--------AAGGCTGCTT------ATCAG--------------------ATCGG-AG-TGTCGTCAGCGGCACT--CGGG-TTTTTCCTCAATGAA-----------------------------AGTTGTGTAATTTTCTGAAAATGCAG
droTak1 scf7180000410539:23769-24015 + AATGAA--------------------CAAGCTGCTGATTTTGGCCCTTTGCCTGGGCGTGGTCTGT------GCAGGTAGTGAAATTT-GT----AAAATCAAATATTCCTGAAAATTACAAACAGGA--TGTGAA------------TAGTGCTG-------CCTA-----------GATCCTGTTGATAAG-GTTCTAGTTT---TTT--------GAGGCTTTCT------ATCGGCTG-----------------------CG-TGTCGTCAACAGCTCT--CGGG-TTTTTCCTCAATGAAAT------ATTTACACAATATTATGGGAAAGTTGTGTAATTTTCTGAGAATGCGA
droEle1 scf7180000491046:3593081-3593337 + AATGAAAGTAAAGTGTTTG----------------TAGTTAGATCCTTTTTCTTGAGGCTGCCTATCAGCTCAGATCTAGTGAAACATTTTA---AAAGTTAAATATTCTTTAAAATAACAAATGAAA--AGTATA------------TGGTGTGT-------ACAG-----------GATCCTT----------------TTT---CAC--------GTGGCTGCTT------ATCAGCTACGAT-----------GAATTTG-AG-TTTAATCAACAGCATCGACGGA-ATTTCCCTGAATGAAAT------ATTTACACAACACCTCGGGAAAATTGTGTAATATTCGGAAACTGTGG
droRho1 scf7180000773222:19699-19958 - AATGAA--------------------TAAATTGCTGATTTTGGCCCTTTGTCTGGGTGTGGTCTGT------GGAGGTAGTGAAATATTTCT---GAAATTAAATATTCTTTAAAATTACAAATAAAA--AGTAAA--------------GTGCGTACATATGTTCA-----------GATCCTG----------------TTT---TTT--------G-GGCTGCTT------ATCAGCTCCGGTGAATCTCAGT--AATCTT-AG-TGTCGTCAGCAGCATTATCGGT-TTTTCCCTGAATGAAAT------ATTTACACAACATCTTGGGAAAATTGTGTAATTTACTAAAAATGTGG
droFic1 scf7180000448563:2570-2810 + AATGAA--------------------CAAGTTGCTGATTTTCGCCCTTTGCTTGGGTGTGGTCTGT------GCAGGTAGTGAAGTTCTTC----AAAATTAAATACTTCTGAAAACCAAATACATAT--GGT--A------------CAGTGAGC-------ACCA-----------GGTCCTGTTAATCTG-ATTCGAACAT---GGA--------AAGACTCCTT------ATCTG--------------------ATCTG-AA-TGTCGT-------ACA--ATGT-TTTTCCCTCAATGAAAT------ATTTACACAACATCTTGGGAAAATTGTGCAATTTCCCGGGAATGAAG
droKik1 scf7180000302684:1005086-1005317 - AATGAA--------------------TAAGCTGCTGATTTTGGCCCTCTGCCTGGGTGTGGTCTGT------GCAGGTAGTGAGCGATTCT----AAAAT-------TTCTTAAAACA-------------------------------------A-------TTCAAATCCTGCCTAAGCCGAATCGAT------------TCC--GAATCGCCTTGGTGGTGGCCT-----TATCAGCTCAGTC-----------GGATCTGTGG-TGTCGTCATTGCCATTGGTGGATTTTACCCTCAATGAAAT------ATTTACACAACACCTTGGA-AAATTGTGTAATC----------GTGG
droAna3 scaffold_12916:5038405-5038624 + TATGAA--------------------TAAGTTCTTGATTCTGGCCCTGTGTCTGGGTGTGGTGGCT------GCAGGTAGTGCAATATTTTAA--ATATTTTAATA--------------------------ATAT------------TATTGTGT-------CTCG-----------GATCCTGTCGACTGT-GTCTTTCATC---CTG--------GAAGCGGCTT------ATCAGTAGTTG------------AGATTAT-AG---------ATTGCATC-AGGGC-TTTTCCCTGAATGAAAT------ATTTACACAACACCT---------TGTGTAATTTTTACAAAACGTGG
droBip1 scf7180000396366:137817-138036 + AATGAA--------------------CAAGTTCTTAATTCTGGCCCTGTGTCTGGGTGTGGTCGCT------GCAGGTAGTGCAAGATTTT----ATATTTTAATA--------------------------TTAA------------CATTGTGT-------CTCG-----------GGTCCTGACGACTGTCGATCTCTCAT--CCTG--------GAAGCGGCTT------ATCGCTACTTG------------AGATTAT-AGATCTCATCA----------GGGA-TTTTCCCTGAATGAAAT------ATTTACACAACACCT---------TGTGTAATTTTTACAAAACGTGG
dp5 4_group4:6103910-6104159 + TATGAA--------------------TAAGCTGCTTATACTGGCGCTTTGCCTGGGCGTGGCTGCT------GCAGGTAGACATCTT-----------------------TGAATATTGAAGGCATGA--------GAGTGTTGGGAAAAGTGACA-------TTCT-----------GATCCTGTGGTTGTG-CATTTTCTTC---CTT--------GGGCACGCTTTTCGTCTTTGCCTCTGCT-----------GGATCCCAAG-TGTTGTCATCG-------CGTA-TTTTCCCTCAATGAACTACGAGGATTTACACTACACCCTTCA-GACCTGTGTAATTT---GAGTGTTCGA
droPer2 scaffold_16:788865-789122 - TATGAA--------------------TAAGCTGCTTATACTGGCGCTTTGCCTGGGCGTGGCTGCT------GCAGGTAGACATCTT-----------------------TGAATATTGAAGGCATGA--------GAGTGTTGGGAAAAGTGACA-------TTCT-----------GATCCTGTGGTTGTG-CATTTTCTTC---CTT--------GGGCACGCTTTTC---GTCTTTGCCCCTGGATCTCTGCTGGATCCCAAG-TGTTGTCATAG-------CGTA-TTTTCCCTCAATGAACTACGAGGATTTACACTACACCCTTCA-GACCTGTGTAATTT---GAGTGTTCGA
droWil2 scf2_1100000004516:64672-64724 + TATGAA--------------------TAAACTATTCGTGCTGGCCCTATGTCTGGGTGTGGTCTGT------GGAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12723:3314014-3314081 - TATGAG--------------------ATCATTGTTGGTGCTGGCTCTGTGCCTGGGTGTGGTCTGT------GCAGGTAAAGAGCTCCTTT----TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:6481929-6482001 + AGTACAAAAAACAAACTCAATATGAGATCTATATTGGTGCTGGCTCTGTGCCTGGGCGTGGTCTGT------GCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:156656-156878 + TATGAG--------------------ATCATTGTTGCTGCTCGCCCTCTGCCTGGGTGTGGTCTGT------GCAGGTAAAGAGCTGTTCC----T-ATTTATGTATGCCCAAAGACTGG-CATAAAG--TGT---------TCAAAAAAAT-----------------------------CCTTTTGACGTT-TCCCTGTTTG---GTG--------GCAATTGCAA------AAC-GTGTTTT------------AACTCGT-TGATTTAATCA----------GTCG--TTGTGCCGAATAAACT------TTTAACACAACAC-------AAATTGTGCAACG---------TGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATGAA--------------------TAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTGTTCCC---AATATCTGCTAGTCCAGAAAATTACACCTAAGA--TGTAAA------------CTGTGCCG-------GCTT-----------GGTCCTGGCGATCTC-ATCCAAGTGT---TTT--------GAGGCTGCCT------ATCAGCACTTGT-----------GGATCAG-AG-TGTCGTCAGTGGCACT--TGGG-TTTTTCCTGAATGAAAT------ATTTACACAACACCCTGGG-AAATTGTGTAATTT---------ATGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................TTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................1911.00100000000000100000
..........................................GCCCTTTGCCTGGGTGTGGTCTGT------GG...............................................................................................................................................................................................................................................................................................2611.00100000000000100000
.............................................CTTTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2111.00100100000000000000
droSec2
AATGAA--------------------TAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCAATA------------TCTGCTAGTCCAGAAAATTACACCTAAGA--TGTAAA------------CTCTG------------CC-----------GGTCCTGGCGATCTC-ATCCAAGTGT---TTT--------GAGGCTGCCT------ATCAGTACTTGT-----------GGATCAT-AG-TGTCGTCAGTGGCACT--TGGG-TTTTTCCTGAATGAAAT------ATTTACACTGCACCCTGGG-AAATTGTGTAATTT---------ATGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................CCTTTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2311.0010010
........................................TGGCCCTTTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................2511.0010001
............................AGCTGCTGGTTTTGGCCT...........................................................................................................................................................................................................................................................................................................................1830.3310010
dm3
AATGAA--------------------TAAGCTGCTGATTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTCGTTTCCCGAATATCAACTAGTTCAGAAAATTAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................GCCTGGGTGTGGTCTGT------GGA..............................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000
................................GCTGATTTTGGCCCTTTGCCTGGGTGT..............................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................TTTGGCCCTTTGCCTGGGTGT..............................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGCCTGGGTGTGGTCTGT------GG...............................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
.....A--------------------TAAGCTGCTGATTTTGGCCCT..........................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATGAA--------------------TAAGCTGCTGAT...................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AA--------------------TAAGCTGCTGATTTTG...............................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000
...............................................TTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
..TGAA--------------------TAAGCTGCTGATTTT................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TGGGTGTGGTCTGT------GGAG.............................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
....................................................TGGGTGTGGTCTGT------GGAGA............................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
.............................GCTGCTGATTTTGGCCCTT.........................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGATTTTGGCCCTTTGCCTGGGT................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGAA--------------------TAAGCTGCTGATTTTGGC.............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGAA--------------------TAAGCTGCTGATTTTGG..............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCTGCTGATTTTGGCCCT..........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGAA--------------------TAAGCTGCTGATTTTGGCCCT..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATGAA--------------------TAAGCTGCTGATTTT................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....A--------------------TAAGCTGCTGATTTTGGCCCTTTGCC.....................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................AGCTGCTGATTTTGGCCCTTGA.......................................................................................................................................................................................................................................................................................................................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GGTGTGGTCTGT------GGAGGT...........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGAA--------------------TAAGCTGCTGATTT.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................CTTTGCCTGGGTGTGGTCTGT------GGG..............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................TGGTCTGT------GGAGGTAGTG.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................AGCTGCTGATTTTGGCCCTTTGCCTG...................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGCCTGGGTGTGGTCTGT------GGA..............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................GCTGCTGATTTTGGCCCTTTGCC.....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CTGGGTGTGGTCTGT------GGA..............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................CTTTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.ATGAA--------------------TAAGCTGCTGAT...................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGGCCCTTTGCCTGGGTGTGGTCTGT------GGA..............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....A--------------------TAAGCTGCTGATTTTGGCCCTTTGCCT....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCTGATTTTGGCCCTTTGCCT....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGCCTGGGTGTGGTCTGT------GG...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................TGCCTGGGTGTGGTCTGT------GGA..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................AGCTGCTGATTTTGGCCCT..........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GAA--------------------TAAGCTGCTGATTTT................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTTTGCCTGGGTGTGGTCTGT------GGA..............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................AGCTGCTGATTTTGGCCCTTTGCCT....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GCCTGGGTGTGGTCTGT------GG...............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................TTTGGCCCTTTGCCTGGGTGTT.............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATGAA--------------------TAAGCTGCTGGTCTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTGTTCC----GAAATAAGCTAATCCAGAGAATTGCACCTAAGA--TGTAGC-------------------------------------------------------TG-ATCCAA-TTT---TTC--------GAGACTGCCT------ATCAGTGCA-GT-----------GGATCGC-AG-TGTCGTCAGTGGCACT--T-GT-TTTTCCCTGAATGAAAT------ATTTACACAACACCCTG---AAATTGTGTAATTT---------ATGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................AGCTGCTGGTCTTGGCCCTTTG.......................................................................................................................................................................................................................................................................................................................2211.0011000000
...........................AAGCTGCTGGTCTTGGCCC...........................................................................................................................................................................................................................................................................................................................1911.0010100000
...............................TGCTGGTCTTGGCCCTTTGCC.....................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................................TTTGCCTGGGTGTGGTCTGT------GG...............................................................................................................................................................................................................................................................................................2211.0010000100
droYak3
AATGAA--------------------TAAGCTGCTGGTTTTGGCCCTTTGCCTGGGTGTGGTCTGT------GGAGGTAGTGCACTGTTCC----AAAATCAACTTTTCCCGAAAATTACACCTAAGA--TGTAAC------------CAGTGCCG-------GCTT-----------GGTCCTGTCGATCTG-ATCCAAGTTT---TTT--------GAGGCTGCCT------ATCAGTGCTTGT-----------GGATCAG-TG-AGTCGTCAGTGGCACT--TGGT-TTTTTCCTGAATGAAAT------ATTTACACAACAACCCGGG-AAATTGTGTAATTT---------ATGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................TTGGCCCTTTGCCTGGGTGTGGTCT.........................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................CTGGGTGTGGTCTGT------GGAGGTAGTG.......................................................................................................................................................................................................................................................................................2511.00100000010000
...............................TGCTGGTTTTGGCCCTTTGCCTGG..................................................................................................................................................................................................................................................................................................................2411.00100100000000
............................................CCTTTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2311.00100010000000
....................................................................................................................................................................................................................................................................................................................................CAACCCGGG-AAATTGTGTAA................2011.00100100000000
.............................................CTTTGCCTGGGTGTGGTCTGT------GG...............................................................................................................................................................................................................................................................................................2311.00100010000000
...........................................CCCTTTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2411.00100100000000
..........................................GCCCTTTGCCTGGGTGTGGTCTGT------GGAG.............................................................................................................................................................................................................................................................................................2811.00100100000000
......................................TTTGGCCCTTTGCCTGGGTGTGG............................................................................................................................................................................................................................................................................................................2311.00100100000000
.....A--------------------TAAGCTGCTGGTTTTGGCCC...........................................................................................................................................................................................................................................................................................................................2111.00100100000000
droEug1
AATGAA--------------------TAAGCTGCTGATTTTGGCCCTCTGTCTGGGTGTGGTCTGT------GGAGGTATTGAAATTTTCC----TCAATTGAAAGCTCCTTAAAAATGCAAACAATATATGTTAA------------GAGTGTTT-------TTGA-----------AATCCTGCGAATCTG-GCAAAAGTTT---TTT--------GAGGCTGCTT------ATCAGCTGCT-----TATCTGCTGCTTCCG-AG-TGTCGTCAGCGACTTT--TGGG-TTTTTCCTGAATGAAAT------TTTTACACAACACCTTGGG-AAATTGTGTAATTTTCTGAGAATATAGSizeHit CountTotal NormTotal
No Reads
droBia1
AATGAA--------------------TAAGCTGCTGATTCTGGCCCTTTGCCTGGGCGTGGTCTGC------GGAGGTAGTGAAATTTTCC----GAACTCAAATAATCCTGAAAATTGCAAATGAGG--TGTAAA------------TAGTGCTC-------TCTG-----------GCTCCTGTGGATGTG-GTCCGAGTTT-TGTTT--------AAGGCTGCTT------ATCAG--------------------ATCGG-AG-TGTCGTCAGCGGCACT--CGGG-TTTTTCCTCAATGAA-----------------------------AGTTGTGTAATTTTCTGAAAATGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
AATGAA--------------------CAAGCTGCTGATTTTGGCCCTTTGCCTGGGCGTGGTCTGT------GCAGGTAGTGAAATTT-GT----AAAATCAAATATTCCTGAAAATTACAAACAGGA--TGTGAA------------TAGTGCTG-------CCTA-----------GATCCTGTTGATAAG-GTTCTAGTTT---TTT--------GAGGCTTTCT------ATCGGCTG-----------------------CG-TGTCGTCAACAGCTCT--CGGG-TTTTTCCTCAATGAAAT------ATTTACACAATATTATGGGAAAGTTGTGTAATTTTCTGAGAATGCGASizeHit CountTotal NormTotal
No Reads
droEle1
AATGAAAGTAAAGTGTTTG----------------TAGTTAGATCCTTTTTCTTGAGGCTGCCTATCAGCTCAGATCTAGTGAAACATTTTA---AAAGTTAAATATTCTTTAAAATAACAAATGAAA--AGTATA------------TGGTGTGT-------ACAG-----------GATCCTT----------------TTT---CAC--------GTGGCTGCTT------ATCAGCTACGAT-----------GAATTTG-AG-TTTAATCAACAGCATCGACGGA-ATTTCCCTGAATGAAAT------ATTTACACAACACCTCGGGAAAATTGTGTAATATTCGGAAACTGTGGSizeHit CountTotal NormTotal
No Reads
droRho1
AATGAA--------------------TAAATTGCTGATTTTGGCCCTTTGTCTGGGTGTGGTCTGT------GGAGGTAGTGAAATATTTCT---GAAATTAAATATTCTTTAAAATTACAAATAAAA--AGTAAA--------------GTGCGTACATATGTTCA-----------GATCCTG----------------TTT---TTT--------G-GGCTGCTT------ATCAGCTCCGGTGAATCTCAGT--AATCTT-AG-TGTCGTCAGCAGCATTATCGGT-TTTTCCCTGAATGAAAT------ATTTACACAACATCTTGGGAAAATTGTGTAATTTACTAAAAATGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
AATGAA--------------------CAAGTTGCTGATTTTCGCCCTTTGCTTGGGTGTGGTCTGT------GCAGGTAGTGAAGTTCTTC----AAAATTAAATACTTCTGAAAACCAAATACATAT--GGT--A------------CAGTGAGC-------ACCA-----------GGTCCTGTTAATCTG-ATTCGAACAT---GGA--------AAGACTCCTT------ATCTG--------------------ATCTG-AA-TGTCGT-------ACA--ATGT-TTTTCCCTCAATGAAAT------ATTTACACAACATCTTGGGAAAATTGTGCAATTTCCCGGGAATGAAGSizeHit CountTotal NormTotal
No Reads
droKik1
AATGAA--------------------TAAGCTGCTGATTTTGGCCCTCTGCCTGGGTGTGGTCTGT------GCAGGTAGTGAGCGATTCT----AAAAT-------TTCTTAAAACA-------------------------------------A-------TTCAAATCCTGCCTAAGCCGAATCGAT------------TCC--GAATCGCCTTGGTGGTGGCCT-----TATCAGCTCAGTC-----------GGATCTGTGG-TGTCGTCATTGCCATTGGTGGATTTTACCCTCAATGAAAT------ATTTACACAACACCTTGGA-AAATTGTGTAATC----------GTGGSizeHit CountTotal NormTotal
No Reads
droAna3
TATGAA--------------------TAAGTTCTTGATTCTGGCCCTGTGTCTGGGTGTGGTGGCT------GCAGGTAGTGCAATATTTTAA--ATATTTTAATA--------------------------ATAT------------TATTGTGT-------CTCG-----------GATCCTGTCGACTGT-GTCTTTCATC---CTG--------GAAGCGGCTT------ATCAGTAGTTG------------AGATTAT-AG---------ATTGCATC-AGGGC-TTTTCCCTGAATGAAAT------ATTTACACAACACCT---------TGTGTAATTTTTACAAAACGTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................CTGTGTCTGGGTGTGGTGG.........................................................................................................................................................................................................................................................................................................1912.002200000
.............................................CTGTGTCTGGGTGTGGTGGCT------GC...............................................................................................................................................................................................................................................................................................2311.001000100
............................................CCTGTGTCTGGGTGTGGT...........................................................................................................................................................................................................................................................................................................1811.001100000
...................................GATTCTGGCCCTGTGTCT....................................................................................................................................................................................................................................................................................................................1811.001100000
..................................TGATTCTGGCCCTGTGTCTGGGT................................................................................................................................................................................................................................................................................................................2311.001100000
...................................GATTCTGGCCCTGTGTCTG...................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................CTGGCCCTGTGTCTGGGTGTGGT...........................................................................................................................................................................................................................................................................................................2311.001000010
...........................................CCCTGTGTCTGGGTGTGGTGG.........................................................................................................................................................................................................................................................................................................2111.001000001
.................................................GTCTGGGTGTGGTGGCT------GCAG.............................................................................................................................................................................................................................................................................................2111.001000010
........................................TGGCCCTGTGTCTGGGTGTGGTGGC........................................................................................................................................................................................................................................................................................................2511.001100000
.................................TTGATTCTGGCCCTGTGTCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2711.001001000
.........................................GGCCCTGTGTCTGGGTGTGGTGGC........................................................................................................................................................................................................................................................................................................2411.001001000
........................................TGGCCCTGTGTCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2011.001100000
..............................TTCTTGATTCTGGCCCTGTGT......................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................GCCCTGTGTCTGGGTGTGGTGGCT------GC...............................................................................................................................................................................................................................................................................................2611.001000001
...........................AAGTTCTTGATTCTGGCCC...........................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
AATGAA--------------------CAAGTTCTTAATTCTGGCCCTGTGTCTGGGTGTGGTCGCT------GCAGGTAGTGCAAGATTTT----ATATTTTAATA--------------------------TTAA------------CATTGTGT-------CTCG-----------GGTCCTGACGACTGTCGATCTCTCAT--CCTG--------GAAGCGGCTT------ATCGCTACTTG------------AGATTAT-AGATCTCATCA----------GGGA-TTTTCCCTGAATGAAAT------ATTTACACAACACCT---------TGTGTAATTTTTACAAAACGTGGSizeHit CountTotal NormTotal
No Reads
dp5
TATGAA--------------------TAAGCTGCTTATACTGGCGCTTTGCCTGGGCGTGGCTGCT------GCAGGTAGACATCTT-----------------------TGAATATTGAAGGCATGA--------GAGTGTTGGGAAAAGTGACA-------TTCT-----------GATCCTGTGGTTGTG-CATTTTCTTC---CTT--------GGGCACGCTTTTCGTCTTTGCCTCTGCT-----------GGATCCCAAG-TGTTGTCATCG-------CGTA-TTTTCCCTCAATGAACTACGAGGATTTACACTACACCCTTCA-GACCTGTGTAATTT---GAGTGTTCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................TTCT-----------GATCCTGTGGTTGTG-.......................................................................................................................................................................1911.0010100000000
......................................................................................................................................................GTGACA-------TTCT-----------GATCCTGTGGTTGT.........................................................................................................................................................................2411.0010000001000
......................................ACTGGCGCTTTGCCTGGGCGTGG............................................................................................................................................................................................................................................................................................................2311.0010000001000
.........................................GGCGCTTTGCCTGGGCGTGGCT..........................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................CGCTTTGCCTGGGCGTGG............................................................................................................................................................................................................................................................................................................1811.0010100000000
......................................ACTGGCGCTTTGCCTGGGCGTGGCTG.........................................................................................................................................................................................................................................................................................................2611.0010100000000
.......................................CTGGCGCTTTGCCTGGGCGTG.............................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................G-CATTTTCTTC---CTT--------GGGCACGCTTTTC..................................................................................................................................2711.0010100000000
............................................................................................................................................................................................................................................TGCCTCTGCT-----------GGATCCCAAG-T............................................................................................2111.0010010000000
............................................GCTTTGCCTGGGCGTGGCT..........................................................................................................................................................................................................................................................................................................1911.0010000010000
...................................................................................................................................................................TTCT-----------GATCCTGTGGTTGTG-CA.....................................................................................................................................................................2111.0010100000000
droPer2
TATGAA--------------------TAAGCTGCTTATACTGGCGCTTTGCCTGGGCGTGGCTGCT------GCAGGTAGACATCTT-----------------------TGAATATTGAAGGCATGA--------GAGTGTTGGGAAAAGTGACA-------TTCT-----------GATCCTGTGGTTGTG-CATTTTCTTC---CTT--------GGGCACGCTTTTC---GTCTTTGCCCCTGGATCTCTGCTGGATCCCAAG-TGTTGTCATAG-------CGTA-TTTTCCCTCAATGAACTACGAGGATTTACACTACACCCTTCA-GACCTGTGTAATTT---GAGTGTTCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................CCTGGGCGTGGCTGCT------GCA..............................................................................................................................................................................................................................................................................................1911.001000001
..................................................................................ATCTT-----------------------TGAATATTGAAGGCATGA--------GAGT.............................................................................................................................................................................................................................2711.001001000
.................................................................................................................................................................................................................................................................................................................................CTACACCCTTCA-GACCTGTGT..................2111.001001000
.......................................CTGGCGCTTTGCCTGGGCGTG.............................................................................................................................................................................................................................................................................................................2111.001000100
droWil2
TATGAA--------------------TAAACTATTCGTGCTGGCCCTATGTCTGGGTGTGGTCTGT------GGAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................TATGTCTGGGTGTGGTCTGT------GGAGA............................................................................................................................................................................................................................................................................................2511.00100001
..............................CTATTCGTGCTGGCCCTATGTCT....................................................................................................................................................................................................................................................................................................................2311.00101000
..................................................TCTGGGTGTGGTCTGT------GGAG.............................................................................................................................................................................................................................................................................................2011.00100010
.................................TTCGTGCTGGCCCTATGTC.....................................................................................................................................................................................................................................................................................................................1911.00101000
..............................CTATTCGTGCTGGCCCTATG.......................................................................................................................................................................................................................................................................................................................2011.00100001
...............................TATTCGTGCTGGCCCTATGTCT....................................................................................................................................................................................................................................................................................................................2211.00101000
.................................TTCGTGCTGGCCCTATGTCTG...................................................................................................................................................................................................................................................................................................................2111.00110000
...............................TATTCGTGCTGGCCCTATG.......................................................................................................................................................................................................................................................................................................................1911.00101000
....AA--------------------TAAACTATTCGTGCTGGCC............................................................................................................................................................................................................................................................................................................................2111.00110000
.................................................GTCTGGGTGTGGTCTGT------GGAGG............................................................................................................................................................................................................................................................................................2211.00100100
..............................CTATTCGTGCTGGCCCTATGTC.....................................................................................................................................................................................................................................................................................................................2211.00101000
.............................................CTATGTCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2111.00100100
...............................................ATGTCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2011.00100100
.........................................GGCCCTATGTCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2211.00100001
.............................ACTATTCGTGCTGGCCCTATGTCTG...................................................................................................................................................................................................................................................................................................................2511.00100001
.................................................GTCTGGGTGTGGTCTGT------GGAG.............................................................................................................................................................................................................................................................................................2111.00100001
droVir3
TATGAG--------------------ATCATTGTTGGTGCTGGCTCTGTGCCTGGGTGTGGTCTGT------GCAGGTAAAGAGCTCCTTT----TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................CTCTGTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
....................................GTGCTGGCTCTGTGCCTGGGTGTGGT...........................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
.............................ATTGTTGGTGCTGGCTCTGTGCCT....................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................GTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.....G--------------------ATCATTGTTGGTGCTGGCTCT..........................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
..............................................TGTGCCTGGGTGTGGTCT.........................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
...........................................CTCTGTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
............................................TCTGTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
....................................GTGCTGGCTCTGTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
AGTACAAAAAACAAACTCAATATGAGATCTATATTGGTGCTGGCTCTGTGCCTGGGCGTGGTCTGT------GCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................GCCTGGGCGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2011.001000100
.............................................CTGTGCCTGGGCGTGGTCT.........................................................................................................................................................................................................................................................................................................1911.001000001
.............................TATATTGGTGCTGGCTCTGTGCCTGGGC................................................................................................................................................................................................................................................................................................................2811.001000001
........................................TGGCTCTGTGCCTGGGCGTGGT...........................................................................................................................................................................................................................................................................................................2211.001100000
....................................GTGCTGGCTCTGTGCCTGGGCGT..............................................................................................................................................................................................................................................................................................................2311.001000001
..............................................TGTGCCTGGGCGTGGTCTGT------GCAGA............................................................................................................................................................................................................................................................................................2511.001100000
............................CTATATTGGTGCTGGCTCTGT........................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
TATGAG--------------------ATCATTGTTGCTGCTCGCCCTCTGCCTGGGTGTGGTCTGT------GCAGGTAAAGAGCTGTTCC----T-ATTTATGTATGCCCAAAGACTGG-CATAAAG--TGT---------TCAAAAAAAT-----------------------------CCTTTTGACGTT-TCCCTGTTTG---GTG--------GCAATTGCAA------AAC-GTGTTTT------------AACTCGT-TGATTTAATCA----------GTCG--TTGTGCCGAATAAACT------TTTAACACAACAC-------AAATTGTGCAACG---------TGTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................GCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2024.00862
...................................................CTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................1823.50761
..................................................CCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................1923.00624
......................................GCTCGCCCTCTGCCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2223.00660
...................................GCTGCTCGCCCTCTGCCTG...................................................................................................................................................................................................................................................................................................................1922.50550
.............................ATTGTTGCTGCTCGCCCTCT........................................................................................................................................................................................................................................................................................................................2022.00440
..TGAG--------------------ATCATTGTTGCTGCTC...............................................................................................................................................................................................................................................................................................................................2022.00413
.............................................CTCTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2422.00440
...............................................CTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................1921.50321
..........................................GCCCTCTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2721.50330
.....G--------------------ATCATTGTTGCTGCTCG..............................................................................................................................................................................................................................................................................................................................1821.50330
...................................GCTGCTCGCCCTCTGCCT....................................................................................................................................................................................................................................................................................................................1821.50330
......................................GCTCGCCCTCTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................2721.50330
..........................................GCCCTCTGCCTGGGTGTGGTCT.........................................................................................................................................................................................................................................................................................................2221.50330
...................................GCTGCTCGCCCTCTGCCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2521.00220
.ATGAG--------------------ATCATTGTTGCTGCTC...............................................................................................................................................................................................................................................................................................................................2121.00202
........................................TCGCCCTCTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2621.00220
..........................................GCCCTCTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2421.00220
............................................CCTCTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................1921.00220
..TGAG--------------------ATCATTGTTGCTGCTCG..............................................................................................................................................................................................................................................................................................................................2121.00220
.............................................CTCTGCCTGGGTGTGGTCTGT------GC...............................................................................................................................................................................................................................................................................................2321.00211
............................................CCTCTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2521.00220
...............................................CTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2221.00220
..................................................CCTGGGTGTGGTCTGT------GC...............................................................................................................................................................................................................................................................................................1821.00220
.......................................CTCGCCCTCTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2421.00220
...........................................CCCTCTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2021.00220
.......................................CTCGCCCTCTGCCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2121.00220
.............................................CTCTGCCTGGGTGTGGTCT.........................................................................................................................................................................................................................................................................................................1921.00220
..........................................GCCCTCTGCCTGGGTGTG.............................................................................................................................................................................................................................................................................................................1821.00220
.ATGAG--------------------ATCATTGTTGCTGCTCGCC............................................................................................................................................................................................................................................................................................................................2421.00211
...................................GCTGCTCGCCCTCTGCCTGGGTGT..............................................................................................................................................................................................................................................................................................................2421.00220
..............................................TCTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2321.00220
....AG--------------------ATCATTGTTGCTGCTCGC.............................................................................................................................................................................................................................................................................................................................2021.00220
......................................GCTCGCCCTCTGCCTGGGTG...............................................................................................................................................................................................................................................................................................................2020.50110
..............................TTGTTGCTGCTCGCCCTCT........................................................................................................................................................................................................................................................................................................................1920.50110
.......................................CTCGCCCTCTGCCTGGGTG...............................................................................................................................................................................................................................................................................................................1920.50110
...........................................CCCTCTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................2220.50110
...GAG--------------------ATCATTGTTGCTGCTCGCCCTCTG.......................................................................................................................................................................................................................................................................................................................2720.50110
...GAG--------------------ATCATTGTTGCTGCTCGC.............................................................................................................................................................................................................................................................................................................................2120.50110
............................................CCTCTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................2120.50101
.....G--------------------ATCATTGTTGCTGCTCGCC............................................................................................................................................................................................................................................................................................................................2020.50110
...GAG--------------------ATCATTGTTGCTGCTCGCCCTG.........................................................................................................................................................................................................................................................................................................................2520.50110
...GAG--------------------ATCATTGTTGCTGCTC...............................................................................................................................................................................................................................................................................................................................1920.50101
....................................CTGCTCGCCCTCTGCCTGGGTGT..............................................................................................................................................................................................................................................................................................................2320.50101
......................................GCTCGCCCTCTGCCTGGGTGTGGT...........................................................................................................................................................................................................................................................................................................2420.50110
................................GTTGCTGCTCGCCCTCTGCCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2820.50110
......................................GCTCGCCCTCTGCCTGGGTGTGG............................................................................................................................................................................................................................................................................................................2320.50110
...............................................CTGCCTGGGTGTGGTCTGT------GCAG.............................................................................................................................................................................................................................................................................................2320.50110
................................................TGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2120.50110
...........................................CCCTCTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................2620.50110
.............................ATTGTTGCTGCTCGCCCT..........................................................................................................................................................................................................................................................................................................................1820.50110
............................................CCTCTGCCTGGGTGTGGTCTGT------GC...............................................................................................................................................................................................................................................................................................2420.50110
.............................ATTGTTGCTGCTCGCCCTCTGC......................................................................................................................................................................................................................................................................................................................2220.50110
..TGAG--------------------ATCATTGTTGCTGCT................................................................................................................................................................................................................................................................................................................................1920.50101
TATGAG--------------------ATCATTGTTGCTGCTCGCC............................................................................................................................................................................................................................................................................................................................2520.50101
.ATGAG--------------------ATCATTGTTGCTGCTCGC.............................................................................................................................................................................................................................................................................................................................2320.50110
.....G--------------------ATCATTGTTGCTGCTCGCCCTCT........................................................................................................................................................................................................................................................................................................................2420.50110
................................GTTGCTGCTCGCCCTCTGCCTG...................................................................................................................................................................................................................................................................................................................2220.50110
.................................................GCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................1820.50101
..TGAG--------------------ATCATTGTTGCTGCTCGCCC...........................................................................................................................................................................................................................................................................................................................2420.50110
.......................................CTCGCCCTCTGCCTGGGTGTGGTCTGT------GCA..............................................................................................................................................................................................................................................................................................3020.50101
..............................................TCTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................1920.50110
.ATGAG--------------------ATCATTGTTGCTGCTCG..............................................................................................................................................................................................................................................................................................................................2220.50101
..................................................CCTGGGTGTGGTCTGT------GCAGA............................................................................................................................................................................................................................................................................................2120.50101
..................................................CCTGGGTGTGGTCTGT------GCAG.............................................................................................................................................................................................................................................................................................2020.50101
.............................ATTGTTGCTGCTCGCCCTCTGCC.....................................................................................................................................................................................................................................................................................................................2320.50110
........................................TCGCCCTCTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2320.50101
....AG--------------------ATCATTGTTGCTGCTCGCCCTCTGC......................................................................................................................................................................................................................................................................................................................2720.50110
..........................................GCCCTCTGCCTGGGTGTGGTCTGT------GCAG.............................................................................................................................................................................................................................................................................................2820.50110
..........................................GCCCTCTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2120.50110
..........................ATCATTGTTGCTGCTCGCC............................................................................................................................................................................................................................................................................................................................1920.50110
....................................CTGCTCGCCCTCTGCCTGGGTGTG.............................................................................................................................................................................................................................................................................................................2420.50110
...................................................CTGGGTGTGGTCTGT------GCAG.............................................................................................................................................................................................................................................................................................1920.50110
................................GTTGCTGCTCGCCCTCTGCC.....................................................................................................................................................................................................................................................................................................................2020.50110
TATGAG--------------------ATCATTGTTGCTGCTC...............................................................................................................................................................................................................................................................................................................................2220.50110
......................................GCTCGCCCTCTGCCTGGGTGTGGTC..........................................................................................................................................................................................................................................................................................................2520.50110
..TGAG--------------------ATCATTGTTGCTGCTCGCC............................................................................................................................................................................................................................................................................................................................2320.50101
.............................................CTCTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2120.50101
..........................ATCATTGTTGCTGCTCGCCCTCT........................................................................................................................................................................................................................................................................................................................2320.50110
.............................................CTCTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2220.50110
....AG--------------------ATCATTGTTGCTGCTCGCC............................................................................................................................................................................................................................................................................................................................2120.50110
..............................................TCTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2020.50110
.........................................CGCCCTCTGCCTGGGTGTGGTCT.........................................................................................................................................................................................................................................................................................................2320.50110
................................GTTGCTGCTCGCCCTCTG.......................................................................................................................................................................................................................................................................................................................1820.50110
.........................................CGCCCTCTGCCTGGGTGTGG............................................................................................................................................................................................................................................................................................................2020.50110
....AG--------------------ATCATTGTTGCTGCTCGCCC...........................................................................................................................................................................................................................................................................................................................2220.50110
............................................CCTCTGCCTGGGTGTGGTCTGT------.................................................................................................................................................................................................................................................................................................2220.50101
..............................................TCTGCCTGGGTGTGGTCTGT------G................................................................................................................................................................................................................................................................................................2120.50110
...............................................CTGCCTGGGTGTGGTCTG........................................................................................................................................................................................................................................................................................................1820.50110

Generated: 05/19/2015 at 11:43 AM