dsi_26594

CDS [2l_18035089_18035552_-]; exon [2l_18035089_18035552_-]; intron [2l_18034493_18035088_-]

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	-

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACGTGACGGAGGCAATGCCACCAGTTCAAAACCACAACTCCATGACCAGGTGAGTTGAAAGTTGTATATCCAATAGTTTTAGAGTAAAAAGGTATGCTAAATTCATTAACAAGTATGTGTCAGATAAATGAAATTGTTTCCGGACCTAAAAGGTCTGTATATTCTTGATCAGGATTACTAGCAAATACGATCTAGCCATATTTTTCTGTCCGTATGAACGTCAAGATCTTGAAAAATATAAAAGTTACA ************************************************(((.((((...(((((((......((.((((.......)))).))((((((((((.....((((.((((((((......))).........(((((((...)))))))))))).))))....)))))..))))).))))))).)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	O001 Testis
.............CAATGCGACCAGTTAACAACC........................................................................................................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TGAACGTCAAGACCTTTAAAAAAA...........	24	3	2	0.50	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGACCGTATGAACGTCAAGATCTT...................	24	1	4	0.25	1	0	0	1	0	0	0	0	0
........................................................................................................................................................................................AATACCATCGAGCCATTTTTT.............................................	21	3	4	0.25	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................CCGTATGAACTTCGAGATATTGAA................	24	3	6	0.17	1	0	0	0	0	1	0	0	0
...................................................................................................................................................TAAGAGGTCTGAATATTC.....................................................................................	18	2	7	0.14	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................TGATTTTCTGTCCGTATGATC..............................	21	3	8	0.13	1	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................CTGTCCGTATGAACGTCAAGA.......................	21	0	16	0.06	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................ATATTCTTGATCAGGATT.........................................................................	18	0	17	0.06	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................GTCCGTATGAACGTCAA.........................	17	0	20	0.05	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................TGTATGAACGTCGAGATCTTTAAA...............	24	3	20	0.05	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAAAATCTAAAAGTTACC	18	2	20	0.05	1	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................TGTCCGTATGAACGTCA..........................	17	0	20	0.05	1	0	1	0	0	0	0	0	0
............................................................................GTTTTAGAGCAAAAGGGCA...........................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0

GTGCACTGCCTCCGTTACGGTGGTCAAGTTTTGGTGTTGAGGTACTGGTCCACTCAACTTTCAACATATAGGTTATCAAAATCTCATTTTTCCATACGATTTAAGTAATTGTTCATACACAGTCTATTTACTTTAACAAAGGCCTGGATTTTCCAGACATATAAGAACTAGTCCTAATGATCGTTTATGCTAGATCGGTATAAAAAGACAGGCATACTTGCAGTTCTAGAACTTTTTATATTTTCAATGT ************************************************(((.((((...(((((((......((.((((.......)))).))((((((((((.....((((.((((((((......))).........(((((((...)))))))))))).))))....)))))..))))).))))))).)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
...................................................................................................................................................................................................CGGTATAAAAGGACAGTCATAAT................................	23	3	2	1.50	3	3	0	0	0	0	0	0
...................................................................................................................................................................................................CGGTAGAAAAGGACAGGCATAAT................................	23	3	2	1.50	3	3	0	0	0	0	0	0
...................................................................................................................................................................................................CGGTAGAAAAAGACTGGCATAAT................................	23	3	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................CGGTAGAAAAAGACAGTCATAAT................................	23	3	1	1.00	1	1	0	0	0	0	0	0
.........CTCCGTTACGGTGGTCAAGTTTT..........................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................CGGTATAAAAGGACTGGCATAGT................................	23	3	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................CGGGATAAAAGGACAGGCATAGT................................	23	3	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................ATATAAGAACTAGTCCTAATGATC....................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTGCAGTTCTAGAACCTTTTATATTT.......	26	1	2	0.50	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................CGGTATAAAAGGAAAGGCATAAT................................	23	3	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................AGTGCTAATGATCGTT.................................................................	16	1	2	0.50	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................CGGTATAAAAGGACAGTCATAGT................................	23	3	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................................................................................ACGACTAGTGCTAATGATCGTT.................................................................	22	3	2	0.50	1	0	0	0	0	1	0	0
.................................................................................................................................................................................CGATCGGTTAGGCTAGATCG.....................................................	20	3	5	0.40	2	0	0	0	0	0	2	0
...................................................................................................................................................................................................CGGTATAAGAGGACAGGCATAGT................................	23	3	3	0.33	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................GGTAGAAAAGGACAGGCATAAT................................	22	3	3	0.33	1	1	0	0	0	0	0	0
.......................................AGGTACTGGTCCACTG...................................................................................................................................................................................................	16	1	5	0.20	1	0	0	0	0	0	0	1
.....................................................................................................................................................................................................GTATAAAAGGACAGTCATAAT................................	21	3	8	0.13	1	1	0	0	0	0	0	0
...........................................................................................................................................................................TGCTAATGATCGTTAAGGCT...........................................................	20	3	10	0.10	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................AGACAGGCATACTTGCAGTTCTA......................	23	0	11	0.09	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................GGTATAAGAAGACAGGTATAAT................................	22	3	13	0.08	1	1	0	0	0	0	0	0
........................................................................................................................AGTCTACTTGCTATAACAAA..............................................................................................................	20	3	14	0.07	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................................AAAGACAGGCGTACT................................	15	1	15	0.07	1	0	0	0	0	0	0	1
.............................................................................................................................................................................CTAATGATCGTTAAGGC............................................................	17	2	16	0.06	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................CGCTTATGCCAGATCAGT...................................................	18	3	16	0.06	1	1	0	0	0	0	0	0
................................................................................................................................................................ATAAGAACTAGTCCTAAT........................................................................	18	0	16	0.06	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................AGACAGGCATACTTGCAGTTCTAGAGC..................	27	1	16	0.06	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................GACAGGCATACTTGCAGTT.........................	19	0	17	0.06	1	0	0	0	0	0	1	0
..................................................................................................................................................................AAGGACTAGTCCTGATG.......................................................................	17	2	20	0.05	1	0	0	0	0	0	0	1
.................................................................................................................................................................................................................AGGCATACTTGCAGTTCT.......................	18	0	20	0.05	1	0	0	0	0	0	0	1
.........................................................................................................................................................................AGTGCTAATGATCGCT.................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................TACTTGCAGTTCTAGA....................	16	0	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................ACAGGCATACTTGCAGT..........................	17	0	20	0.05	1	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:18034889-18035138 -	dsi_26594	CAC-GTGACGGAGG------------------CAATGCC-ACCAGTTCAAAACCA-----CA---ACTC---------CATGA-------------------------------------------CCAGGTGAG---------------TTGAAA--GTT------------------G-------TATATC-------CAATAGTTT---TAGAGTAAAAAGGTATGCTAAATTCATTA-------ACAAGTATGTGTCAGATAAATGAAATTGTTTCCGGACCTAAAAGGTCTGTATATTCTTGATCAGGATTACTAGCAAATACGATCTAGCCATATTTTTCTGTCCG--------------------TATGAACGTCAAGATCTTGAAAAATATAA-AAGTTACA-
droSec2	scaffold_7:2099795-2100007 -		CAC-GTGACGGAGG------------------CAATGCC-ACCAGTTCAAAACCA-----CA---ACTC---------CATGA-------------------------------------------CTAGGTGAG---------------T--------------------------------------------------------------------------TGAAATATATTCGTTA-------ACAAGTATGTGTCAGATAAATGAAATTGTTTCCGGACCTGAAAAGTTTATATATTCTTGATTACGATTACTAGCAAATACGATCTAGCCATATTTGTATATCCG--------------------TATGAACGTCAAGTTCTTGAAAAATATAA-AAGTTACA-
dm3	chr2L:18473906-18474168 -		CAC-GTGACGGAGG------------------CAATGCA-ACCAGTTCAAAACAA-----CA---ACTC---------CATGA-------------------------------------------CCAGGTGAG---------------TTGAAA--GTT------------------G-------TATACC-------CATGTGTCG---TAAAGGAAAAGGGTAAGCTATATTCGTTA-------ACAATTATGTTACAGATAAATGGAATTGTTTCCGATCCTGAAAAGTCTATATATTTTTGATCAGGATTACTAGTCAATTCAATCTAGCCATGTTTGTCTGTCCGTCTGTTTG--------TCCGTATGAACAACGAGATCTTGGGAAATTCAAAATGTTAAA-
droEre2	scaffold_4845:7773100-7773332 -		GC-------------------------------AATGCA-AACAATTCAAATAAA----------GGTT---------TATCA-------------------------------------------TTACTT-----------------------A--TAT------------------T-------TATATC-------TATTACTTT---TAGAGTAAAAGGGTATACTAGATTCGTTA-------AAAAGTATGTAACAGGCAGAAGGAAACTTTTCCGATCATATAAACTATATATATTCTTAATCAGGATCCATAACTGAGTCGATCTGGCCATGTTCGTCTGTCTGTC----------------CGTATGAAAGCCTCGATCTCAGGAACTACAA-GAGCTGGAA
droYak3	v2_chr2L_random_010:564602-564857 -		TGA-GCG---GTTT------------------CAATGCT-AAAAACTAAAG--CA----CGG--------------------C-------------------------------------------CCACGTGA----------------TTGAAA--GGTGCT-----------------------GATCAT-------AGTTAGTCG---TAGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAAAAAGCGTTTCCGACCTAATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTAGCCATGTCCATCTGTCCGTCCGTCCGTCTG----TCCGTATGAACGTCGAGATCTCAGAAACTACAA-AAGCTAGAA
droEug1	scf7180000408828:48669-48913 -		CAC-TTGACGA----------------------AATACA-AAAAGTTCATTTAAA------------------------ATTA----------CTTCATTA-------------------------CCA------------------------AAA--TAT--------------CCCTT-------TATACC-------CATTGATCG---TAGAGTGAAAGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGTAGAAGGAAGCGT-TCCGAC-CTATGAGGTATATATATTCTTGATCAGGATGAATAGCGAAGACGATTGAGCCATGTCCGTCTGTCTGTC----------------CGTATGAACGCTGGTATCTCATGAACTATAA-GAGATATAA
droBia1	scf7180000302291:532194-532431 -		CACCGTGCCGA-----------------------ATGAG-ATCATTTTAAAA------------------------------AACAAGGTCAT----------------------------------------AG---------------ATCACA--TTT------------------T-------TATACC-------CGTTACTCG---TAGAGTAAAAAGGTATACTAGATTCGTGG-------GAAAGTATGTAATGGGTAGAAGGAAACGTTTCCGGCCCCATGAAGTATATATATTCTTGATCAGAATCACTAGCCGAGTCGATCTAGCCATGGTCGTCTGTCCGTCTCTC------------CGTATGAACGCTGAGATCTCGGA----ATAA-GAGCTA---
droTak1	scf7180000413444:911-1175 -		CTT-TTGAGAAAAG------------------TAATGCT-GCTAGTGAAAAAT-----------------------------A----------TTTCATTACTTTTGAGAAAACGTAATGC-----CA------------------------ATAA--TAT------------------T-------TATACC-------CGTTACTCG---TAGAGTAAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCTAAAAGGAAGCATTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGGTATAGCCATGTTCGTCTGTCTGTCCGTC------------TGTATGAACGCTGAGATCTCGGAAACTATAA-AAGCTAGA-
droEle1	scf7180000490640:216160-216382 +		AGT-T------------------------------------------TAAAAGTA-----TA---TTTT---------AGTGA-------------------------------------------ACAAATGTG---------------GT---A--GTTGCT---------T----CT-------TAAGCG-------CGTTACTCG---TAGAGTAGAAGGGCATATTGTATTCGATG-------AAAAGTATGTAAAAGGTAAAAGGAAGCGTTTCCGACC-CATAGAGTATATGTATTCTTGATCAGGATCAATAGCCGAGACGAAGGAGG-----TCGTCTGTC--------------------CGTATGAGCGTGAAAATCTCGAAAACTTTAA-CTATTAGA-
droRho1	scf7180000780244:34231-34479 -		AAG-GCGAGGAAAA------------------CAAAACA-T---ACCG------------C--TG-CAA-AACAACTACCCGA------CCAT---------------------------------TTAC----------------------CTAA--TTT------------------T-------TATACC-------CGTTACTCG---TAGAGTAAAAGTGTATATTGTATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----------------CGTATAAACGCTGAGATCTCGGAAACTATAA-AAGCTAGA-
droFic1	scf7180000452571:5312-5519 -		AAT-GCCA--TTCG----------------------------CATTCCAGAAACA-----TA---TTTT---------AAG-----------------------------------------------------------------------------GGTAACCATCTAAACCGAATTT-------TATATC------------CTTG---CAGAGCAAAAGGGTATTGTAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGAAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGCAGAGTCGGAATACGTCTGTACGTCTGCCCGTCTGTCCA--------------------TC-----------------------------
droKik1	scf7180000302711:189843-190059 -		CTC-CTAGCCAAAGACCAAGACCAGTCCCGGGCC---------AATCCAATG---------------TC---------AATTC-------------------------------------------CTACATGAGTCAG-----------CTGACT--TTG------------------T-------TATACC-------CT----------------TGCAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCG--------------------TC-----------------------------
droAna3	scaffold_13228:540-739 -		GAA-G---------------------------CAATAAC-ACTAGTTTACACCAAAAATGAA---CCTC---------CATAA-------------------------------------------AAAAGT-----------------------G--TTT------------------T-------TATACC-------CTT-----G---C------AGAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCCG--------------------TC-----------------------------
droBip1	scf7180000394013:932-1157 +		GAA-G--------G------------------CAGTGCG---TATTCCAAAGTCA-----CGTTG-TCA---------GATCT-------------------------------------------TTATGTAAG---------------TTAAAGTATTT------------------T-------TATACC-------CGGTACTTT---TAGAGTACAAGATTATATTGTATTGGTGT------------------ACATTGAGAGGGAATCACCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAACAACCGAGCCGATATAGCCACGTCCGCCTATCTGTA------------------TATAAACGTA--TAT-------TCTATAA-GAAATAGA-
dp5	2:24984963-24985191 -		TC----------------------------------------------AGAACCT-----CA---ACCAC--------AATAA-------------------------------------------AAGC----------------------AGTA--TTT------------------T-------TATACC-------CGATACTCAAAAT-GATTACTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAAAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTC----------------CCTATTAGCGCCTAGTGCTCAAAGACTATAA-GAGCTA---
droPer2	scaffold_4:6453754-6453999 -		AAT-G--------------------------------TT-ACTAGCTGAATAAGA-----CG-----CT---------CAG---------------------------------------CCCTGAACACATAAG---------------T-------TTA------------------T-------TATACC-------CGATACTCAAAAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGCAACGTCCAGAAGGAATCCTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGATTCGATTGAGCCATGTCTGTCTGTCCGTC----------------CCCTTCAGCGCCTAGTGCTCAAAGACTGTCA-CTGCTACA-
droWil2	scf2_1100000004909:945426-945654 -		CAT-C----------------------------AATAC----------ACAAACA-----AA---ACAT---------TATTA-------------------------------------------CTCTTTTTA---------------CTACAA--TTT------------------T-------TATACC-------ATACACCCA---TAAGGTGAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACGGGCATACGGAAGCATCTCCGACTCCATAAAGTTTATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTTCGTCTGTCCG--------------------TATGAACACCTAGATCTCGAAGACTATAA-GAGCTA---
droVir3	scaffold_12855:5828465-5828733 -		AC--GTGCCACGGG------------------CAAGGT----CGGGTTATACCCA-----CT---A-TC---------GTTGA-------------------------TCAAATATTTT-----GGAAAA----------------------ATAT--TTT------------------G-------TATACCCTGAACCCATTGAAAA---TGGGTAAATGGGGTATAATGTATTTGTGC-------AAATGTATGTAAAAGGCAAAAGGAAGAATCTTCGACCCCATAAAGTATATATATTCTTGATCAGCATCATTATCCGAGTCGATCTAGCCATGTCCGTCCGTCTGCCTGTCCG--------TATGTATGACCGCAAAGATATTAGAAGCTATAA-GAGCGAC--
droMoj3	scaffold_6498:3297447-3297723 -		CGT-C--GCGGAGA------------------CAAATCCAACAAATCAAAAAC-------------------------TATGA-------------------------------------------AAATTGGTC-CAGCAGATCTCGAGTTATAA----G------------------T-------TATACCCTGAACCCATTTTTAA---TGGGAAATCAGGGTATAATGGTTTTGTT--------AAATGTATGTGACAGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTAGCTCTGTCCGTCTGTCCTTCCGTCCGTCTGTCCGTATGTTTGAACGCGTCGATCTCAGAGGATATAA-GAGCTA---
droGri2	scaffold_15245:11363167-11363443 -		CGA-TTGCCGATAG------------------TAATA----AAAGCCA------------CCA--TTTT---------AAACGCCCAGACTGT---------------------------ACATAGACAATTGCG---------------TT---T--GTTGCA---------A----CCCAATGGCTATACCCTGAACCCATTAAAAA---TGGGTCAGAAGTGTATAATGGTTTTGTAC-------AAATGTATGCAACAGGCGGAAGGAAGCATCTCCGATCCCCTAAGGTATATATATTCTTGATCAGGGTCAAAAGCCGAGTCGATATAGCCATGTCCGTCCGTCCGTCCATC------------TTTATGAACACGCGGATCTCAGAGACTATAA-GAAT-----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAC-GTGACGGAGG------------------CAATGCC-ACCAGTTCAAAACCA-----CA---ACTC---------CATGA-------------------------------------------CCAGGTGAG---------------TTGAAA--GTT------------------G-------TATATC-------CAATAGTTT---TAGAGTAAAAAGGTATGCTAAATTCATTA-------ACAAGTATGTGTCAGATAAATGAAATTGTTTCCGGACCTAAAAGGTCTGTATATTCTTGATCAGGATTACTAGCAAATACGATCTAGCCATATTTTTCTGTCCG--------------------TATGAACGTCAAGATCTTGAAAAATATAA-AAGTTACA-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................CTGTCCG--------------------TATGAACGTCAAGA.........................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATT...............................................................................................	18	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTCCG--------------------TATGAACGTCAA...........................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGTCCG--------------------TATGAACGTCA............................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CAC-GTGACGGAGG------------------CAATGCC-ACCAGTTCAAAACCA-----CA---ACTC---------CATGA-------------------------------------------CTAGGTGAG---------------T--------------------------------------------------------------------------TGAAATATATTCGTTA-------ACAAGTATGTGTCAGATAAATGAAATTGTTTCCGGACCTGAAAAGTTTATATATTCTTGATTACGATTACTAGCAAATACGATCTAGCCATATTTGTATATCCG--------------------TATGAACGTCAAGTTCTTGAAAAATATAA-AAGTTACA-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CAC-GTGACGGAGG------------------CAATGCA-ACCAGTTCAAAACAA-----CA---ACTC---------CATGA-------------------------------------------CCAGGTGAG---------------TTGAAA--GTT------------------G-------TATACC-------CATGTGTCG---TAAAGGAAAAGGGTAAGCTATATTCGTTA-------ACAATTATGTTACAGATAAATGGAATTGTTTCCGATCCTGAAAAGTCTATATATTTTTGATCAGGATTACTAGTCAATTCAATCTAGCCATGTTTGTCTGTCCGTCTGTTTG--------TCCGTATGAACAACGAGATCTTGGGAAATTCAAAATGTTAAA-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................ATGTGTCG---TAAAGGAAAAGGGT.........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAAGGAAAAGGGTAAGCTAT..................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..C-GTGACGGAGG------------------CAATGCA-ACC................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTTTGTCTGTCCGTCTGT......................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAAACAA-----CA---ACTC---------CATGA-------------------------------------------CCAG.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AC-GTGACGGAGG------------------CAATGCA-ACC................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TTTTGATCAGGATTACTAGTC........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCTGTTTG--------TCCGTATGAAC................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ACAACGAGATCTTGGGAAAT..............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTTGGGAAATTCAAAATGT.....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................T------------------G-------TATACC-------CATGTGTCG---TAAA...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATATATTTTTGATCAGGATT...............................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TATATTTTTGATCAGGATT...............................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATATATTTTTGATCAGGATTG..............................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATATATTTTTGATCAGGATGC..............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GC-------------------------------AATGCA-AACAATTCAAATAAA----------GGTT---------TATCA-------------------------------------------TTACTT-----------------------A--TAT------------------T-------TATATC-------TATTACTTT---TAGAGTAAAAGGGTATACTAGATTCGTTA-------AAAAGTATGTAACAGGCAGAAGGAAACTTTTCCGATCATATAAACTATATATATTCTTAATCAGGATCCATAACTGAGTCGATCTGGCCATGTTCGTCTGTCTGTC----------------CGTATGAAAGCCTCGATCTCAGGAACTACAA-GAGCTGGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................TAGATTCGTTA-------AAAAGTATGTAACAGG...................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0

droYak3

TGA-GCG---GTTT------------------CAATGCT-AAAAACTAAAG--CA----CGG--------------------C-------------------------------------------CCACGTGA----------------TTGAAA--GGTGCT-----------------------GATCAT-------AGTTAGTCG---TAGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAAAAAGCGTTTCCGACCTAATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTAGCCATGTCCATCTGTCCGTCCGTCCGTCTG----TCCGTATGAACGTCGAGATCTCAGAAACTACAA-AAGCTAGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................ATGTAACAGGCAGAAAAAAGCGTTTCC..................................................................................................................................	27	10	1.10	11	0	0	0	0	0	0	0	0	0	0	11
..............................................................................................................................................................................................................................................................ATGTAACAGGCAGAAAAAAGCGTT.....................................................................................................................................	24	11	1.09	12	0	0	0	0	0	0	0	0	0	0	12
...........................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCC........................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAGTCG---TAGAGTAAAAGGGTATACT....................................................................................................................................................................................	26	19	0.11	2	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAGTAAAAGGGTATACTAGATTCGT............................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCCGTCTG----TCCGTATG...................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TCTG----TCCGTATGAACGTCGAGA.........................	22	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTAACAGGCAGAAAAAAGCGTTTCC..................................................................................................................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTAACAGGCAGAAAAAAGCGTTTC...................................................................................................................................	25	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAGTCG---TAGAGTAAAAGGGTATACTAGA.................................................................................................................................................................................	28	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTCG---TAGAGTAAAAGGGTATACTAGA.................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGTCG---TAGAGTAAAAGGGTATACTAGAT................................................................................................................................................................................	28	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAGTCG---TAGAGTAAAAGGGTATACT....................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGCAGAAA.............................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAGTCG---TAGAGTAAAAGGGTATAC.....................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CGTCGAGATCTCAGAAACTAC............	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCG---TAGAGTAAAAGGGTATA......................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAGTCG---TAGAGTAAAAGGGTATAC.....................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCCGTATGAACGTCGAGATCTCAGAAAC...............	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGAGT....................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAGTCG---TAGAGTAAAAGG...........................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CAC-TTGACGA----------------------AATACA-AAAAGTTCATTTAAA------------------------ATTA----------CTTCATTA-------------------------CCA------------------------AAA--TAT--------------CCCTT-------TATACC-------CATTGATCG---TAGAGTGAAAGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGTAGAAGGAAGCGT-TCCGAC-CTATGAGGTATATATATTCTTGATCAGGATGAATAGCGAAGACGATTGAGCCATGTCCGTCTGTCTGTC----------------CGTATGAACGCTGGTATCTCATGAACTATAA-GAGATATAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACCGTGCCGA-----------------------ATGAG-ATCATTTTAAAA------------------------------AACAAGGTCAT----------------------------------------AG---------------ATCACA--TTT------------------T-------TATACC-------CGTTACTCG---TAGAGTAAAAAGGTATACTAGATTCGTGG-------GAAAGTATGTAATGGGTAGAAGGAAACGTTTCCGGCCCCATGAAGTATATATATTCTTGATCAGAATCACTAGCCGAGTCGATCTAGCCATGGTCGTCTGTCCGTCTCTC------------CGTATGAACGCTGAGATCTCGGA----ATAA-GAGCTA---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTT-TTGAGAAAAG------------------TAATGCT-GCTAGTGAAAAAT-----------------------------A----------TTTCATTACTTTTGAGAAAACGTAATGC-----CA------------------------ATAA--TAT------------------T-------TATACC-------CGTTACTCG---TAGAGTAAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCTAAAAGGAAGCATTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGGTATAGCCATGTTCGTCTGTCTGTCCGTC------------TGTATGAACGCTGAGATCTCGGAAACTATAA-AAGCTAGA-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGT-T------------------------------------------TAAAAGTA-----TA---TTTT---------AGTGA-------------------------------------------ACAAATGTG---------------GT---A--GTTGCT---------T----CT-------TAAGCG-------CGTTACTCG---TAGAGTAGAAGGGCATATTGTATTCGATG-------AAAAGTATGTAAAAGGTAAAAGGAAGCGTTTCCGACC-CATAGAGTATATGTATTCTTGATCAGGATCAATAGCCGAGACGAAGGAGG-----TCGTCTGTC--------------------CGTATGAGCGTGAAAATCTCGAAAACTTTAA-CTATTAGA-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAG-GCGAGGAAAA------------------CAAAACA-T---ACCG------------C--TG-CAA-AACAACTACCCGA------CCAT---------------------------------TTAC----------------------CTAA--TTT------------------T-------TATACC-------CGTTACTCG---TAGAGTAAAAGTGTATATTGTATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----------------CGTATAAACGCTGAGATCTCGGAAACTATAA-AAGCTAGA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAT-GCCA--TTCG----------------------------CATTCCAGAAACA-----TA---TTTT---------AAG-----------------------------------------------------------------------------GGTAACCATCTAAACCGAATTT-------TATATC------------CTTG---CAGAGCAAAAGGGTATTGTAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGAAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGCAGAGTCGGAATACGTCTGTACGTCTGCCCGTCTGTCCA--------------------TC-----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTC-CTAGCCAAAGACCAAGACCAGTCCCGGGCC---------AATCCAATG---------------TC---------AATTC-------------------------------------------CTACATGAGTCAG-----------CTGACT--TTG------------------T-------TATACC-------CT----------------TGCAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCG--------------------TC-----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GAA-G---------------------------CAATAAC-ACTAGTTTACACCAAAAATGAA---CCTC---------CATAA-------------------------------------------AAAAGT-----------------------G--TTT------------------T-------TATACC-------CTT-----G---C------AGAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCCG--------------------TC-----------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................GTC-------AAAAGTGTGCAACGCAGTGAAGG............................................................................................................................................	26	20	0.20	4	0	0	0	0	0	4
..........................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTC.............................................................	20	20	0.15	3	3	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCACCTC..........................................................................................	20	20	0.15	3	0	0	0	0	0	3
................................................................................................................................................................................................................................................................................................................................CCTGAGTCGATATGAGCATGTC.....................................................................	22	20	0.10	2	2	0	0	0	0	0
...............................................TACACCAAAAATGAA---CCTC---------CATAA-------------------------------------------AAAAG........................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0

droBip1

GAA-G--------G------------------CAGTGCG---TATTCCAAAGTCA-----CGTTG-TCA---------GATCT-------------------------------------------TTATGTAAG---------------TTAAAGTATTT------------------T-------TATACC-------CGGTACTTT---TAGAGTACAAGATTATATTGTATTGGTGT------------------ACATTGAGAGGGAATCACCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAACAACCGAGCCGATATAGCCACGTCCGCCTATCTGTA------------------TATAAACGTA--TAT-------TCTATAA-GAAATAGA-	Size	Hit Count	Total Norm	Total
No Reads

dp5

TC----------------------------------------------AGAACCT-----CA---ACCAC--------AATAA-------------------------------------------AAGC----------------------AGTA--TTT------------------T-------TATACC-------CGATACTCAAAAT-GATTACTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAAAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTC----------------CCTATTAGCGCCTAGTGCTCAAAGACTATAA-GAGCTA---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT...........................................................................................................................................................	22	20	2.30	46	0	0	0	0	11	0	35	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCTG...............................................................	21	20	2.25	45	0	45	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTG..........................................................................................................................................................	23	20	0.90	18	0	0	0	0	18	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTA........................................................................................................................................................	25	20	0.70	14	0	0	0	0	0	0	14	0	0	0
............................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAG..........................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCG...........................................................	21	20	0.35	7	0	0	0	0	0	0	0	5	2	0
........................................................................................................................................................................................................................................................................................................................................................................................AGCGCCTAGTGCTCAAAGACT..............	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGATTTGTGGTGAAAATGG.................................................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCG.......................................................................................	20	20	0.20	4	0	0	0	0	0	4	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTC----------------CC.......................................	20	20	0.15	3	0	2	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAATGGATGTGTGTAACGTC...................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAACGT....................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGTCCGTC----------------CCTATTAGCGCC.............................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCATGTCTGTCTG...............................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTGTAACGT....................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TCCAAAAGGAATCGTTTCCGACCCC............................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAGGAATCGTTTCCGACCCCATAAA.......................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAGGAATCGTTTCCGACCCCAT..........................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAGGAATCGTTTCCGACCCCA...........................................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TCCAAAAGGAATCGTTTCCGA................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAGGAATCGTTTCCGACCCC............................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGT.........................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................GGTATATTAGATTTGTGGT.........................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................AAAAGGAATCGTTTCCGACCC.............................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAACGTCCAAAAGGAATCGTT.....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTC----------------CCTATTAGCGC..............................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAAAAGGAATCGTTTCCGAC...............................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTAACGTCCAAAAGGAATCG.......................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAGGAATCGTTTCCGACCC.............................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGG.................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CCTAGTGCTCAAAGACTATAA-GAGCT....	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................GTGTAACGTCCAAAAGGAATC........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................AATCGTTTCCGACCCCATAAAGT.....................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTGT.........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................GTGTGTAACGTCCAAAAGG............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGATGT.............................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTC----------------CC.......................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGTA........................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTC----------------CCTATTAGCGCCT............................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATT...............................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGT..............................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GTCCAAAAGGAATCGTTTCC..................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................TGAAAATGGATGTGTGTAA.......................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

AAT-G--------------------------------TT-ACTAGCTGAATAAGA-----CG-----CT---------CAG---------------------------------------CCCTGAACACATAAG---------------T-------TTA------------------T-------TATACC-------CGATACTCAAAAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGCAACGTCCAGAAGGAATCCTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGATTCGATTGAGCCATGTCTGTCTGTCCGTC----------------CCCTTCAGCGCCTAGTGCTCAAAGACTGTCA-CTGCTACA-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGT...................................................................................................................................................................	20	20	0.65	13	0	0	0	0	0	13
....................................................................................................................................................................................................................................................................................................................................ATTCGATTGAGCCATGTCTGT..................................................................	21	8	0.25	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGATT....................................................................................	25	20	0.20	4	0	4	0	0	0	0
............................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGCAACGT....................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................AAAAGTGGATGTGTGCAACG.....................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................CGATTCGATTGAGCCATGTCT....................................................................	21	8	0.13	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGCA........................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................CGATTCGATTGAGCCATGTC.....................................................................	20	9	0.11	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGC.........................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTC----------------.........................................	23	20	0.10	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................ATAGCCGATTCGATTGAG............................................................................	18	17	0.06	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGATTCG..................................................................................	27	18	0.06	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GATGTGTGCAACGTCCAGA...............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GATGTGTGCAACGTCCAGAAG.............................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAT.....................................................................................	24	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGATTCGA.................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

CAT-C----------------------------AATAC----------ACAAACA-----AA---ACAT---------TATTA-------------------------------------------CTCTTTTTA---------------CTACAA--TTT------------------T-------TATACC-------ATACACCCA---TAAGGTGAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACGGGCATACGGAAGCATCTCCGACTCCATAAAGTTTATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTTCGTCTGTCCG--------------------TATGAACACCTAGATCTCGAAGACTATAA-GAGCTA---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................AACAACCGAGTCGATCTAGCCATGT......................................................................	25	20	0.90	18	0	0	0	18	0
....................................................................................................................................................................................................................TAAGGTGAAATGGTATATTAAAGTCGC............................................................................................................................................................................	27	20	0.60	12	0	0	0	12	0
..............................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAACCGAGT....................................................................................	25	20	0.45	9	0	0	0	9	0
...........................................................................................................................................................................................................................AAATGGTATATTAAAGTCGCC...........................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0
....................................................................................................................................................................................................................TAAGGTGAAATGGTATATTAAAGTCG.............................................................................................................................................................................	26	20	0.15	3	0	1	1	1	0
....................................................................................................................................................................................................................TAAGGTGAAATGGTATATTAAAGTCGCC...........................................................................................................................................................................	28	16	0.13	2	0	2	0	0	0
....................................................................................................................................................................................................................TAAGGTGAAATGGTATATTAAAGTC..............................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
...............................................................................................................................................................................................................CA---TAAGGTGAAATGGTATATTAAAGT...............................................................................................................................................................................	26	20	0.10	2	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................AACAACCGAGTCGATCTAGCCATGTTC....................................................................	27	14	0.07	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTTCGTCTGTCCG--------------------.......................................	26	16	0.06	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................ACCGAGTCGATCTAGCCATGTTCGT..................................................................	25	17	0.06	1	0	0	1	0	0
.............................................................................................................................................................................................TACC-------ATACACCCA---TAAGGTGAAATGG..........................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0
......................................................A-----AA---ACAT---------TATTA-------------------------------------------CTCTTTTTA---------------CTACAA--.............................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................CA---TAAGGTGAAATGGTATATTAAAG................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................AACCGAGTCGATCTAGCCATG.......................................................................	21	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................TAAGGTGAAATGGTATATTAAA.................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
................................................ACAAACA-----AA---ACAT---------TATTA-------------------------------------------CTCTTTT......................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0

droVir3

AC--GTGCCACGGG------------------CAAGGT----CGGGTTATACCCA-----CT---A-TC---------GTTGA-------------------------TCAAATATTTT-----GGAAAA----------------------ATAT--TTT------------------G-------TATACCCTGAACCCATTGAAAA---TGGGTAAATGGGGTATAATGTATTTGTGC-------AAATGTATGTAAAAGGCAAAAGGAAGAATCTTCGACCCCATAAAGTATATATATTCTTGATCAGCATCATTATCCGAGTCGATCTAGCCATGTCCGTCCGTCTGCCTGTCCG--------TATGTATGACCGCAAAGATATTAGAAGCTATAA-GAGCGAC--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGCATCAT.............................................................................................	24	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAAGTATATATATTCTTGA.......................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CGACCCCATAAAGTATATATA..............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCCGTCTG...........................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCCGTCTG...........................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TATAATGTATTTGTGC-------AC.................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCCGT..............................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................T------------------G-------TATACCCTGAACCCATTGAAAA---TGG....................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCC....................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGT-C--GCGGAGA------------------CAAATCCAACAAATCAAAAAC-------------------------TATGA-------------------------------------------AAATTGGTC-CAGCAGATCTCGAGTTATAA----G------------------T-------TATACCCTGAACCCATTTTTAA---TGGGAAATCAGGGTATAATGGTTTTGTT--------AAATGTATGTGACAGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTAGCTCTGTCCGTCTGTCCTTCCGTCCGTCTGTCCGTATGTTTGAACGCGTCGATCTCAGAGGATATAA-GAGCTA---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................CAACAAATCAAAAAC-------------------------TATGA-------------------------------------------AAATTGG......................................................................................................................................................................................................................................................................................	27	11	1.27	14	14	0	0	0	0	0
.................................................................................................................................................................................................................................................................TGACAGGCAGAAGGAGGCGTGG....................................................................................................................................	22	13	0.15	2	0	0	0	1	0	1
..................................................................................................................................................................................................................................................................GACAGGCAGAAGGAGGCGTGG....................................................................................................................................	21	14	0.14	2	2	0	0	0	0	0
......................................CAACAAATCAAAAAC-------------------------TATGA-------------------------------------------AAATTGGTC-...................................................................................................................................................................................................................................................................................	29	10	0.10	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGTATGTGACAGGCAGAAGG............................................................................................................................................	20	12	0.08	1	1	0	0	0	0	0
..........................................AAATCAAAAAC-------------------------TATGA-------------------------------------------AAATTGG......................................................................................................................................................................................................................................................................................	23	13	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGAGGATATAA-GAGCTT---	22	17	0.06	1	0	0	0	0	0	1
.........................................................................................................................................................................................................ATTTTTAA---TGGGAAATCAGGGT.........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTGTCCGTATGT......................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................ATAATGGTTTTGTT--------AAATGTAT...........................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................TTTAA---TGGGAAATCAGGGTATAATGG..................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTATGTTTGAACGC..............................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCTGTCCTTCCGTCCGTCTGTTT............................................	23	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................GTCCGTATGTTTGAACGCGTC...........................	21	20	0.05	1	0	0	0	0	1	0

droGri2

CGA-TTGCCGATAG------------------TAATA----AAAGCCA------------CCA--TTTT---------AAACGCCCAGACTGT---------------------------ACATAGACAATTGCG---------------TT---T--GTTGCA---------A----CCCAATGGCTATACCCTGAACCCATTAAAAA---TGGGTCAGAAGTGTATAATGGTTTTGTAC-------AAATGTATGCAACAGGCGGAAGGAAGCATCTCCGATCCCCTAAGGTATATATATTCTTGATCAGGGTCAAAAGCCGAGTCGATATAGCCATGTCCGTCCGTCCGTCCATC------------TTTATGAACACGCGGATCTCAGAGACTATAA-GAAT-----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................................................................................................................ATAGCCATGTCCGTCCGTC.............................................................	19	13	0.08	1	1	0

dsi_26594

2l:18034939-18035088 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.9	-22.9	-22.8