ID:

dsi_26573

 Coordinate:

3l:15981882-15982088 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.5 -14.8 -14.7

Flybase annnotation

three_prime_UTR [3l_15980713_15982199_-]; exon [3l_15980713_15982346_-]

No Repeatable elements found

Sense Strand Reads

###################################################################################################################################################################################################################################################################################################################
ATGGGCGGAAAAGAATATGTATAATGCAATCATTTTACACATCGTTAGAGGTTTGTACCGCACAGTTCAAACTTTGGTAGAATTTCAAAAGTAATTGTAGTTAAATCTGATCCGAGCGATCCGTTATTGGATCGGAGCCAAAACAAAAAATCAATTGGGTTGGATACCGTCTATTAGAATCTATTAAATAATTGTCTAATTAGTTCATTGTTCAAATTTTGTGCAAATGTGTTACTCATGTTCGTGTTATGTTTCAGATTCGGGGTTTGTGTCTAGCACACATAGTGAAAAGTATAAGAGCAAACAA
***********************************************************************************************.....((...(((((((((((((...)))..)))))))))).....................))**************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 M023
head
 O001
Testis
 GSM343915
embryo
...............................................................................................TGTAGTTAAATCTGATCCGAGCGATCCGT....................................................................................................................................................................................... 29 0 1 9.00 9 0 0 0 3 0 0 6 0 0 0 0 0 0
..............................................................................................TTGTAGTTAAATCTGATCCGAGCGAT........................................................................................................................................................................................... 26 0 1 4.00 4 0 1 0 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGTCTGTTAGA................................................................................................................................. 20 2 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................GTAATTGTAGTTAAATCTGATCCGAGC.............................................................................................................................................................................................. 27 0 1 4.00 4 0 0 2 0 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGTCTGTTAG.................................................................................................................................. 19 2 1 4.00 4 3 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................GGTTGGAAACCGTCTGTTA................................................................................................................................... 19 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGTCTGTTA................................................................................................................................... 18 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GTAGTTAAATCTGATCCGAGC.............................................................................................................................................................................................. 21 0 1 3.00 3 0 0 2 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................GGTTGGAAACCGTCTGTT.................................................................................................................................... 18 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGTCTGTT.................................................................................................................................... 17 2 4 2.25 9 6 0 0 0 0 0 0 3 0 0 0 0 0
................................................................................................................................................................TGGAAACCGTCTGTTAGA................................................................................................................................. 18 2 2 2.00 4 2 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTGGAAACCGTCTGTTAGA................................................................................................................................. 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCCGAGCGATCCGTTATTGGATCGGAGC......................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
................................................................................................GTAGTTAAATCTGATCCGAGCGAT........................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................AATTGTAGTTAAATCTGATCCGAGC.............................................................................................................................................................................................. 25 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................AGTTAAATCTGATCCGAGCG............................................................................................................................................................................................. 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCGGAGCCAAAACAAAAAATCAATTGGG.................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTGGTAGAATTTCAAAAGTAATTGTAGT.............................................................................................................................................................................................................. 28 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GTTTCAGATTCGGGGTTTGT..................................... 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................................CCGTTATTGGATCGGAGCC........................................................................................................................................................................ 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATTGTAGTTAAATCTGATCCGAGCGAT........................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTAGTTAAATCTGATCC.................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................TTATTGGATCGGAGCCAAAACAAAAAA............................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGTTGGAAACCGTCTGTTAGAGT............................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TTTGGTAGAATTTCAAAAGTAATTGT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTCGGGGTTTGTGTCTAGCACACA......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................ATGCAATCATTTTACACATCGTTAGA.................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGTGTTACTCATGTTCGTGTTATGTT...................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TGTAGTTAAATCTGATCCGAGCGATCCGTT...................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACAAAAAATCAATTGGGTTGGAT.............................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................TCAGATTCGGGGTTTGTGTCTAGCACA........................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAAAAAATCAATTGGGTTGGATACCGT......................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................CATCGTTAGAGGTTTGTACCGCACAG.................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................CGTTATTGGATCGGAGCCAA...................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCCGAGCGATCCGTTATTGGATCGGA........................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CCGTTATTGGATCGGAGCCA....................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGGGTTGGGTACCGTCTATTAGAATC.............................................................................................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTCGGGGTTTGTGTCTAGCACACATA....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AATTGTAGTTAAATCTGATCCGAGCGA............................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TGTAGTTAAATCTGATCCGAGCGATC.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TTTCAAAAGTCATTGTAGTT............................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................AAAAAATCAATTGGGTTG................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTGGATCGGAGTCTAAAAAAAAA.............................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTTGTGCAAATGTGTTACTCATG................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................TGCAATCATTTTACACATCGTTAGAGGT............................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTCAGATTCGGGGTTTGTGTCTAGCACA........................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGTCTAATTAGTTCATTGTTCAAATT......................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................AAAATCAATTGGGTTGGA............................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................CTTTGGTAGAATTTCAAAAG........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGTCTGTTAGAG................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAATTGTAGTTAAATCTGATCCGAGCG............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGGGTTGGATACCGTCTATTAGAATC.............................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
ATGGGCGGAAAAGAATATGTATGATGCAA...................................................................................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGGTACCGTCTATTAGAATCTATTAAA....................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TACTCATGTTCGTGTTATGTTTCAGA................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................TTGTAGTTAAATCTGATCCGAGCGAAT.......................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TGTAGTTAAATCTGATCCGAGCGATCCGTA...................................................................................................................................................................................... 30 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCGTTATTGGATCGGAGCCAAA..................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TGTAGTTAAATCTGATCCGAGCGAA........................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TGTTCGTGTTATGTTTCAGATTCGGGGT......................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................TATTGGATCGGAGCCAAAACAAA................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATTAGTTCATTGTTCAAAT.......................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGTCTGTTAGAGT............................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TAAATCTGATCCGAGCGATCCGTTA..................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................TTGTAGTTAAATCTGATCCGAGCGA............................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................GTTAAATCTGATCCGAGCGAT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................TCGGAGCCAAAACAAAAAATCAATTGGGT................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGTAGTTAAATCTGATCCGAGCGATCCGT....................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TTATGTTTCAGATTCGGGGTTTGTGTC.................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TATGTTTCAGATTCGGGGTTTGTGTC.................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................ATTTTACACATCGTTAGAGGTTTGTA.......................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................ATGCAATCATTTTACACATCGTTAGAG................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................CATTTTACACATCGTTAGA.................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................GTTATGTTTCAGATTCGGGGTTTGT..................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TGGTAGAATTTCAAAAGTAATTGTAGT.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTGGAAACCGGCTGTTAGA................................................................................................................................. 20 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGAAACCGTCTGTTAGAGT............................................................................................................................... 20 3 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TATGTTTCAGCTTCGGGGATT....................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................TTGGAAACCGTCTGTTA................................................................................................................................... 17 2 11 0.36 4 3 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTGGAAACCGTCTGTTAGAGT............................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGAAACCGTCTGTTAG.................................................................................................................................. 17 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTGGAAACCGTCTGTTAGAG................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGTACGGTTCAAACTTCGG...................................................................................................................................................................................................................................... 19 3 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 2
....................................................................................TCAAAAGTAATTGTGG............................................................................................................................................................................................................... 16 1 10 0.20 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGAAACCGTCTGTTAGA................................................................................................................................. 17 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGAAACAAAAAGTTAATTGGGT................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGTACGGTTTAAACTTTGG...................................................................................................................................................................................................................................... 19 3 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 0 2
..................................................................................................AGATAAATCTGATACGAACGA............................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGAAACCGTCTGTTA................................................................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTGAGGTTTGTACCGC...................................................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................CGCACCGTTCAAACTTCGA...................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................GTTGGAAACCGTCTGT..................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTGGATCGGATCAAAAAAAAA................................................................................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGCACGGTTTAAACTTTGT...................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TACCCGCCTTTTCTTATACATATTACGTTAGTAAAATGTGTAGCAATCTCCAAACATGGCGTGTCAAGTTTGAAACCATCTTAAAGTTTTCATTAACATCAATTTAGACTAGGCTCGCTAGGCAATAACCTAGCCTCGGTTTTGTTTTTTAGTTAACCCAACCTATGGCAGATAATCTTAGATAATTTATTAACAGATTAATCAAGTAACAAGTTTAAAACACGTTTACACAATGAGTACAAGCACAATACAAAGTCTAAGCCCCAAACACAGATCGTGTGTATCACTTTTCATATTCTCGTTTGTT
****************************************************************************************************************************************************.....((...(((((((((((((...)))..)))))))))).....................))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR902009
testis
.........................................................................................................................................................................AGATTCTCTCAGATAATTTAT..................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................TAGATTCTCTTAGATAATTTAT..................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0
.........................................................................................................................................GGTTTGGTTTTTTAGTTA........................................................................................................................................................ 18 1 8 0.13 1 0 1 0 0 0
............................................................................................................CTTGGTTCTCTAGGCAATA.................................................................................................................................................................................... 19 3 14 0.07 1 0 0 1 0 0
..........................GTTAGTAAAATCTGT.......................................................................................................................................................................................................................................................................... 15 1 19 0.05 1 0 1 0 0 0
.................................................................................................................................CTAGCGTCGATTTTGTTTTG.............................................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0
.................ACATGTTACGTTAGT................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0
..................................................................................................................TCGTTAGGCAAGAACCTA............................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................................TCTCGGTTTAGTTTTTTAGGT......................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1
................................................................................................................GTTCTCTAGGCAATAACTT................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 12:06 AM