ID:

dsi_2655

 Coordinate:

2l:26822-26971 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.7 -4.6 -4.4 -4.4

Flybase annnotation

exon [2l_26329_26821_-]; CDS [2l_26329_26821_-]; intron [2l_26822_30134_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTTTTTACTTATTGTTTTGTATAATTTTTCTTAAAATCTTATTTAACATATATCTGTCCTATTTACAAAAACCACCTGTCTCTCATTAATGTACCCTATAACGTTTTGTGAATTTTTGCCAATGTATATAATTTTCGCTATTTATTCGACAACTCTACTCTCACAATCCATCAACAACAAAAACAACAACTTGAACAGAGTTGAGTCGCCTTCACCGTCATCGCTAGGGACACCGCAACCCGCTAATA
********************************************************************..........((...........................((((((.................................................))))))..))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 M023
head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
................................................................................................................................................................................................TTGAACAGAGTTGAGTCGCCT..................................... 21 0 1 4.00 4 2 2 0 0 0 0
......................................................................................................................................................................................AAACAACAACTTGAACAGAGTTGAGT.......................................... 26 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................................................................................................................................GTTGAGTCGCCTTCACCGTCA............................ 21 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................................................................................................GTCGCCTTCACCGTCATCGC........................ 20 0 1 3.00 3 0 3 0 0 0 0
....................................................................................................................................................................................................ACAGAGTTGAGTCGCCT..................................... 17 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................................................AACAACAACTTGAACAGAGTTGAGT.......................................... 25 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................TGAACAGAGTTGAGTCGCCTT.................................... 21 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................AAACAACAACTTGAACAGAGT............................................... 21 0 1 2.00 2 1 1 0 0 0 0
.................................................................................................................................................................................................TGAACAGAGTTGAGTCGCCTTCACC................................ 25 0 1 2.00 2 1 1 0 0 0 0
.................................................................................................................................................ATTCGACAACTCTACTCTCACAATCCA.............................................................................. 27 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................TCGCTAGGGACACCGCAACC........ 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................GTGAACAGAGTTGAGTCG........................................ 18 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TGAGTCGCCTTCACCGTCATCGCT....................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................GAACAGAGTTGAGTCGCCTTC................................... 21 0 1 1.00 1 1 0 0 0 0 0
..TTTTTTACTTATTGTTTTG..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................ACTTGAACAGAGTTGAGT.......................................... 18 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................AACAGAGTTGAGTCGCCTTCACCGT.............................. 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................AAAAACCACCTGTCTCTCATT................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................TTGAACAGAGTTGAGTCGCCTTCACC................................ 26 0 1 1.00 1 0 0 0 0 1 0
............................................................................................................................................TATTTATTCGACAACTCTACT......................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................GAACAGAGTTGAGTCGCCTTCACCG............................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTCATCGCTAGGGACACCGCA........... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TGAGTCGCCTTCACCGTCATCGCTGTC.................... 27 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................CAGAGTTGAGTCGCCTTCACC................................ 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................AATGTATATAATTTTCGCTAT........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................AACTTGAACAGAGTTGA............................................ 17 0 1 1.00 1 1 0 0 0 0 0
...............................................ACATATATCTGTCCTATTTAC...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................AACAACTTGAACAGAG................................................ 16 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................AAAACAACAACTTGAACAGAG................................................ 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................TCTCTCATTAATGTACCCTATAACG................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................TGAGTCGCCTTCACCGTCATCGCTA...................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTCATCGCTAGGGACACCGCAACCC....... 25 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................................................................................................................CAACAACTTGAACAGAGTTGAGTCGC....................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GTGAATTTTTGCCAAT............................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................TTCACCGTCATCGCTAGGGAC................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................TTGAGTCGCCTTCACCGTC............................. 19 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................AGAGTTGAGTCGCCTTCACCG............................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................AAAAACGAGCTGTCTCT..................................................................................................................................................................... 17 2 10 0.20 2 0 0 0 0 0 2
............................................................................................................................................................................TCAACAACAAAAACAAC............................................................. 17 0 9 0.11 1 1 0 0 0 0 0
....................................................................................................................................................................ACTATCCATCTACAACAAAG.................................................................. 20 3 13 0.08 1 0 0 0 0 0 1
.............................................................................................................................................................................................................................ACCGCTTGGGACACCGC............ 17 2 14 0.07 1 1 0 0 0 0 0

Anti-sense strand reads

ATAAAAAATGAATAACAAAACATATTAAAAAGAATTTTAGAATAAATTGTATATAGACAGGATAAATGTTTTTGGTGGACAGAGAGTAATTACATGGGATATTGCAAAACACTTAAAAACGGTTACATATATTAAAAGCGATAAATAAGCTGTTGAGATGAGAGTGTTAGGTAGTTGTTGTTTTTGTTGTTGAACTTGTCTCAACTCAGCGGAAGTGGCAGTAGCGATCCCTGTGGCGTTGGGCGATTAT
******************************************************************************..........((...........................((((((.................................................))))))..))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
 M024
male body
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTAGTTGT........................................................................ 25 0 1 18.00 18 3 10 4 0 0 0 1 0 0 0 0
..................................................................................................................................................AAGCTGTTGAGATGAGAGTGTTAGGT.............................................................................. 26 0 1 15.00 15 0 2 2 7 4 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTAG............................................................................ 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATAAATAAGCTGTTGAGATGAGAGT..................................................................................... 25 0 1 5.00 5 2 1 1 0 0 1 0 0 0 0 0
............................................................................................................................................................GATGAGAGTGTTAGGTAGTTG......................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGCTGTTGAGATGAGAGTGTTAGGTAGT........................................................................... 29 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGTTGAGATGAGAGTGTTAGGTAGT........................................................................... 26 0 1 4.00 4 1 2 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGTTGTT....................................................................... 21 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGAGTGTTAGGTAGTTGTTG...................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AGTGTTAGGTAGTTGTTGTTT................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AGGTAGTTGTTGTTTTTGTTG............................................................. 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
...........................................................................TGGACAGAGAGTAATTACATGGGAT...................................................................................................................................................... 25 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCTCAACTCAGCGGAAGTGGCAGT............................ 25 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGAACTTGTCTCAACTCAGCGGAAG................................... 25 0 1 3.00 3 0 0 1 0 0 0 0 1 0 0 1
...................................................................................................................................................................GTGTTAGGTAGTTGTTGTTTT.................................................................. 21 0 1 3.00 3 2 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................CAGCGGAAGTGGCAGTAGCGATCCCT.................. 26 0 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TGAACTTGTCTCAACTCAGCGGAAGT.................................. 26 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATCCCTGTGGCGTTGGGCGAT... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTGTTGAACTTGTCTCAACTCAGCGG...................................... 26 0 1 3.00 3 0 1 0 0 0 1 0 0 0 0 1
.........................................................................................................................................................................................................CAACTCAGCGGAAGTGGCAGT............................ 21 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0
.................................................................................................................................................................................................................CGGAAGTGGCAGTAGCGATCCCTGT................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGATGAGAGTGTTAGGTAGTT.......................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................TTTTTGGTGGACAGAGAGTAA................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................ATAAATGTTTTTGGTGGACAGAGAGT................................................................................................................................................................... 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................GAGTGTTAGGTAGTTGTTGTTTTTGTT.............................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................CAGAGAGTAATTACATGGGAT...................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................ATAAATTGTATATAGACAGGATAAATGT..................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTAGTTGTT....................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGTTGTTTTTGTTGTTGAACTTGTCT................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................TTGGTGGACAGAGAGT................................................................................................................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGTTGTTGTTTTT................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTTGAGATGAGAGTGTTAGGTAGT........................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTAGTT.......................................................................... 23 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGTTGAACTTGTCTCAACTCAGCGGAAG................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGCAGTAGCGATCCCTGTGGCGT........... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................ATAGACAGGATAAATGTTTTTGGT.............................................................................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTTAGGTAGTTGTTGTTTTTG................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAGATGAGAGTGTTAGGTAGT........................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGAGTGTTAGGTAGTTGTTGT..................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................AGATGAGAGTGTTAGGTAGTTGTT....................................................................... 24 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0
..................................................................................AGAGTAATTACATGGGAT...................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................AAAGCGATAAATAAGCTGTTGAGAT........................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTA............................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................GGGATATTGCAAAACACTTAAAAACGGTT.............................................................................................................................. 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTAGT........................................................................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GAGTGTTAGGTAGTTGTTGTT.................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCTCAACTCAGCGGAAGTG................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCGGAAGTGGCAGTAGCGATCCCT.................. 27 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
..........................................................................................................................................................................GTAGTTGTTGTTTTTGTTGTT........................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GCTGTTGAGATGAGAGTGTTA................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TAAATAAGCTGTTGA.............................................................................................. 15 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0
..............................................TTGTATATAGACAGGATAAATGTTTT.................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCGGAAGTGGCAGTAG.......................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGAGTGTTAGGTAGTTGT........................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGTTGTTGTTTT.................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACTCAGCGGAAGTGGCAGTAGCGATCC.................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGCGGAAGTGGCAGTAGCGA....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTTAGGTAGTTGTTGTTTTT................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTTGTTGAACTTGTCTCAACTCAGCGG...................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................ATAAATAAGCTGTTGAGATG.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................ATAAATGTTTTTGGTGGACAGAGAGTAAT................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................ATATAGACAGGATAAATGTTTTTGG............................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAAGCTGTTGAGATGAGAGTG.................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGTTGTTGTT.................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................TGAGATAAGAGTGTTAGGTAGTTGT........................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TTGCAAAACACTTAAAAACGGTTACAT.......................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................AAATAAGCTGTTGAGATGAGAGTGTT.................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................AAATTGTATATAGACAGGGTAAATGTTTT.................................................................................................................................................................................. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GAGTGTTAGGTAGTTGTTGTTTTTGT............................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................AGAGAGTAATTACATGGGATA..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCGGGAGTGGCAGTAGCG........................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GATGAGAGTGTTAGGAA............................................................................. 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AATAAGCTGTTGAGATGAGAGTGTA.................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................GGGATATTGCAAAACACTTAAA..................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGTTGTTGTTTTTGTTGTTGAACTT..................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AAAGCTGTTGAGATGAGAGTGTTAGGT.............................................................................. 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTAAGCGGAAGTGGCAGTAGC......................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................AGCGATAAATAAGCTGTTGAGATGAGA....................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GATCCCTGTGGCGTTGGGCGA.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATGAGAGTGTTAGGTAGTT.......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGCTGTTGAGATGAGAGTGTTAGGTAGTT.......................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGAGTGTTAGGTAGTTGTTGTTTT.................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGTGGCAGTAGCGATCCCTGTGGCGT........... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................................TTGTATATAGACAGGATAAATGTT.................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATAAATAAGCTGTTGAGATGAGAGTGT................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................AGACAGGATAAATGTTTTTGGTGGAC.......................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................CATGGGATATTGCAAAACACTTAAA..................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATGAGAGTGTTAGGTAGTTGTTGT..................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................GGACAGAGAGTAATTACATGGGAT...................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTGTTTTTGTTGTTGAACTTGTCT................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGTTGAGATGAGAGTGTTAGGTAGTT.......................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTGTTTTTGTTGTTGAACTTG.................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGAGTGTTAGGTAGTTGTT....................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GCTGTTGAGATGAGAGT..................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCTGTTGAGATGAGAGTGTTAGGTAGT........................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGAGTGTTAGGTAGTTGTTGTTT................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTAGGTAGTTGTTTT..................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................TACATGGGATATTGCAAAACACTTAAA..................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGTCTCAACTCAGCGGAAGTGGCA.............................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................AAAAAGAATTTTAGAATAAATTGT........................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCGGAAGTGGCAGTAGCGATCCCT.................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GTTTTTGTTGTTGAACTTGTCTCAACT............................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................GGACAGAGAGTAATTACATGGGATAT.................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................AAGTGGCAGTAGCGATCCCTG................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGCGATAAATAAGCTGT................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTAGGTAGTTGTTGTTTTTGTTGTT........................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGCGATAAATAAGCTGTT................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTTAGGTAGTTGTTGTTTTTGTT.............................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCGGAAGTGGCAGTAGCGAT...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................AGAATAAATTGTATATAGACAGGAT........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................TGTATATAGACAGGAT........................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAGATGAGAGTGTTAGGTA............................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAGTAGCGATCCCTGTGGCGTTGGGC...... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................AGCGATAAATAAGCTGTTGAG............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGTTGAGATGAGAGT..................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................TAAATGTTTTTGGTGGACAGAGAGT................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCTCAACTCAGCGGAAGTGG................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAGCGATAAATAAGCTGTTGAGAT........................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................AAATTGTATATAGACAGGATAAATGT..................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TTGTATATAGACAGGATAAA........................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGCGGAAGTGGCAGTAGCGA....................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTGTTAGGTAGTTGTTGTTT................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCGGAAGTGGCAGTAGCGAT...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACTCAGCGGAAGTGGCAGTAG.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCTGTTGAGATGAGAGTGTT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGATAGTGTTAGGTAGTTGT........................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAGGTAGTTGTTGTTTTTGTTG............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TGGACAGAGAGTAATTACATG.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTAGCGATCCCTGTGGCGTTG......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGT........................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGCAGTAGCGATCCCTGTA............... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................AAATGTTTTTGGTGGACAGAG...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGAACTTGTCTCAACTCAGC........................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TGTTGAACTTGTCTCAACTCA.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAGCGATAAATAAGCTGTTGGTAT........................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCTGTTGAGATGAGAGTGTTAGGT.............................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAGTAGCGATCCCTGT................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TATATTAAAAGCGATAAATAA...................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGTTGT........................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCTCAACTCAGCGGAAGTGGCA.............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AAATAAGCTGTTGAGAGGAGAGTGTTA................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACTCAGCGGAAGTGG................................ 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGAGTGTTAGGTAGTTGTTGTTTTTGT............................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................TGTATATAGACAGGATAAATGTTTT.................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................TGGTGGACAGAGAGTAA................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGCGATAAATAAGCTGTTGA.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TTTTGGTGGACAGAGA..................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGGAAGTGGCAGTAGCGATCCCTAT................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAGCGGAAGTGGCAGTAGCGATC..................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTCAACTCAGCGGAAGTGGCAGTA........................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AAATGGCAGTAGCGATCCCTGTGGCGT........... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................GGTTACATATATTAAAAACGATAAAT........................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAGATGAGAGTGTTATGTAGTTGT........................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................GAGAGTAATTACATGGGAT...................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGAGTGTTAGGTAGTTGTTGTTTTT................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GATGAGAGTGTTAGGTAGTTGTTGTT.................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................GTATATAGACAGGATAAATGT..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGGTAGCTGTTGTT.................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................TGTATATAGACAGGATAAATGTTT................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGTTGTTTTTGTTGTTGAACTTGT................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTTGAGATGAGAGTGTTAGG............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCGGAAGTGGCAGTAGCGATCCCTG................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................AAAAGCTGTTGAGATGAGAGTGTTAGGT.............................................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................TTGGTGGACAGAGAGTAATTACAT........................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGTGGCAGTAGCGATCCCTGT................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CCTGTGGCGTTGCGCG..... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGGTGGACAGAGAGTAATTACATGGGAT...................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAGATGAGAGTGTTAGGTAGTT.......................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCAACTCAGCGGAAGTGGCAGT............................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATATTAAAAGCGATAAATAAGCTGT................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGCAAAACACTTAAAAACGGTTACAT.......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................TGATAGGTAGATGTTGTTTC.................................................................. 20 3 13 0.92 12 0 0 1 0 0 0 1 10 0 0 0
....................................................................................................................................................................TGATAGGTAGATGTTGTTT................................................................... 19 2 6 0.83 5 0 0 0 0 0 0 0 5 0 0 0
............................................................................................................................................CTAAATAAGCTGTTGA.............................................................................................. 16 1 12 0.58 7 0 7 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTTGTTGTTTTTGTTGTTGAA........................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGAGAGTGTTAGGTAG............................................................................ 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGTTGTTTTTGTTGTTGAAC....................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..ACAAACTGAATAACAAAATATAT................................................................................................................................................................................................................................. 23 3 6 0.33 2 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................................................................TGAGAGTGTTAGCTAG............................................................................ 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TAAATAAGCTGTTGAC............................................................................................. 16 1 13 0.31 4 0 4 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATAAATAAGCTGTTAA.............................................................................................. 16 1 20 0.25 5 0 4 1 0 0 0 0 0 0 0 0
......................................................TGGCAGGATAAATGTTTT.................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
............................ACAGAATTTTAGATTAAAATGT........................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................TAAGCTGGTGAGATG.......................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................AAAACACTTAAAACCTGTCACAT.......................................................................................................................... 23 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TGAGAGTTAGGTAGTTGT........................................................................ 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGATAGGTAGATGTTGTTTTA................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TTGTTGTTTTTGTTGTT........................................................... 17 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TGCCGTTGGGCGATTAT 17 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AAAAACTTAAAACCTGTTACAT.......................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................CTAAATAAGCTGTTG............................................................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................AAAAATAAGCTGTTGA.............................................................................................. 16 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCAACGCAGCGGAAG................................... 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
............................................AATTGTGTCTAGACAG.............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................TAGGATAAATGTTATTG................................................................................................................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGTTGTTTTTGTTGT............................................................ 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................CAGGATAAACGTTTATGGG.............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................GATAGGTAGATGTTGTT.................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................TTGTTGTTGTAGTTGAACTGGT................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................ATAAATAAGCTGTTA............................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AAAATAAGCTGTTGA.............................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................TAGATTGTATATAGA................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:26772-27021 - dsi_2655 TATTT-----TTTACTTATTGTTTTGTATA------------------ATTT-TTCTTAAAATCTTATTT-------AACATATAT--CTGTCCTATT----T--ACAAAA--------ACCAC--C--TGTC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CGT---TTTGTGAATTTTTGCCAATGTATATAATT-TTCGCTATTTA--TTCGACAACTCTACTCTC---------ACAATCCA---T-------------CAACAACA-------------------------------------AAAA---CAACAAC-------TTGAACAGAGTTGAGTCGCCTTCACCGTCATCGCTA---GGGACACCGCA---ACC---CGCTAATA
droSec2 scaffold_14:40141-40388 - TATTT-----TTTACTAATTGATTTGTATA------------------ATTT-TTCTTAAAATCTTATTT-------AACATATAT--CTTTCCTATT----T--ACAAAA--------ACCAC--C--TGTC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CGT---TTTGTGAATTTTTGCCAATGTATATAATT-TTCGCTATTTA--TTCGACAACTCTACTCTC---------ACAATCCA---T-------------CAACAACA-------------------------------------AAAA---CAACAAC-------TTG--AAGAGTTGAGTCGCCTTCACCGTCATCGCTA---GGGACACCGCA---ACC---CGCTAATA
dm3 chr2L:35163-35421 - TCTTT-----TGTACTTATTATTTTGTAAA--------ATT-TGTAGAAATT-TTCTTAAAATCTTATTT-------TACTTTTAT--CTTTCCTATT----T--ATAAAA--------ACCAC--A--TGTC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CAT---TTTTTGAATTTTTGGCAATGTATATAATT-TTTGCTATTTA--TTCGACAACTCTACTCTC---------ACAAACCA---T-------------CAACAACA-------------------------------------AAAA---CAACAAC-------TTGAACAGAGTTGAGTCGCCTTCACCGTCATCGCTA---GGGACACCGCA---ACC---CGCTAATA
droEre2 scaffold_4929:61476-61717 - TCTTT-----GGTACTCATTATTTTGTAAG--------A--AAAATTAATTT-T--TTTGTATCTCATTT-------TACATTTGC--CTTTCCTGTT----T--ATGAAA--------ACCAC--CA--------------------------------T-----A------CCCACTT--------------------A----------------CAT---TTTGTGAATTTTTGCCAATGTATATAATA-TTTGCTATTTA--TTCGACAACTCTACTCTC---------ACAAATCA---T-------------CAACAACC-------------------------------------AAAA---CAACCAC-------TTGAACAGAGTTGAGTCGCCTTCATCGTCATCGCTA---GGGACTCCGCA---ACC---CGCTAATA
droYak3 2L:28646-28891 - TCTTT-----GGTACTCATTATT-------------------AGTAGAAC---T--TTTTGTTCTCATTT-------TATATTTAT--CTTTCTTGTT----T--ACACAC--------ACAACATT--AGTT----------------TCTCATTAATGT-----A------CCCAATA--------------------A----------------CA----TATGTGAATTTTTGCCAATGTATATAATA-TTCGCTATTTA--TTCGATAACTCTACTCTC---------ACAAATCA---T-------------CAACAACC-------------------------------------AATA---CAACCAC-------TTGAACAGAGTTGAGTCGTCTTCACCGTCATCGCTA---GGGGCTCCGCA---ACC---CGCTAATA
droEug1 scf7180000409154:32376-32632 - TCCGT-----AGTACTCATTATTTTGTTTT--------ATT-AATTGAATTG-T--TTTTGATCTTATTT-------TACATTTTT--CTCTCCTATT----T--ACGAAC--------ATCAC--CATTGTC----------------TCTCCATAATAT-----A------CTCCCTT--------------------A----------------TTT---GCTGTGAATTATTGCCAATGTATATAATC-TTCGCCATTTA--CACGACATTTCA-------T-----ATTGAAATCATCTT-------------TAATATCC-------------------------------------A--A---CAACAAC-------CTGTACAGAGTTGAGTCATCCTCACCGTCATCACTA---GGGGCTCCGCA---ACT---CGCTAATA
droBia1 scf7180000301455:39743-40007 - TCTTT-----GGTACTCATTATATTGTTCA--------TTTAAATTGAATTG-T--TTTTGATCTTGTTT-------TACATTTTT--CTCTCCTATT----T--ACAAAC--------ATCTA--CATTGTC-----------------CTCCATATACT-----A------CCCATTT--------------------A----------------ATT---GCTGTGAATTTTTGCCCATGTAAATAATC-TTCGACACTTA--CACGACA-CACTACTCTTAT-----ACTTAAATCATCTT-------------CAACATCC-------------------------------------AAAC---GAACAAC-------CTGTACAGAGTTGAGTCATCCTCCCCGTCATCGCTA---GGGGCGCCGCC---ACC---CGCTAATG
droTak1 scf7180000413017:534642-534909 + TCTTTT----GGTATTAATTATTTTGTTGA--------TTTAAATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCTCTTGTT----T--ACGAAC--------ATCAC--CATTGTC----------------CCTCCATAATCT-----A------CCCATTT--------------------A----------------ATT---GCCGTGAATTTCTGTCAATGTAAATAATC-TCCGCCACTTA--CACGACATCACTACACTTAC-----ACCCAAATCATCTT-------------CGACAACC-------------------------------------AAAC---CAACAAC-------CTGTACAGAGTTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGCC---ACC---CGCTAATA
droEle1 scf7180000490770:36532-36798 + TCTTT-----GGTACTTATTATTTTGTTTA--------CTC-AGTTTAATTA-T--TTTTGATCTCGTTT-------TACATTCTTCTCTCTCCTATT----T--ACGAACAT------ATCAT--CATTGTT----------------TCTTCATAATCT-----A------CACAATT--------------------A----------------ATT---TCTGTGAATTTTTGCCAATGTAAATAATC-TTCGCTACCTT--CACAACAACACAATAC---C-----ACCCAAATCATCTT-------------TAACAACC-------------------------------------AAAA---CAACAAC-------GTATACAGAGTTGAGTCATCCTCACCGTCATCGCTA---GGGCCGCCGGA---ACC---TGCTAATA
droRho1 scf7180000779252:95068-95332 + TCTTT-----GGTATCCATTATTTTGTTTA--------ATT-AATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCTCCTGTT----T--ACGAACAA------ATCAC--CATTGTT----------------TCTTCATAATCA-----A------CCCATTT--------------------A----------------ATT---GCTGTGAATTTTTGCCAATGTAAATAATC-TCCGCCACATA--CACAACAACACTACCA---C-----ACCCAAACCATCTT-------------TAACAACC-------------------------------------AAAA---CAACAAC-------GTGTACAGAGCTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGGA---ACC---CGCTAATA
droFic1 scf7180000453904:1467433-1467695 - TCTGT-----GGTACTCATTATTTTGTTTG--------ATT-AATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCCCCTGTT----T---TGAACTT------GTCAC--AATTGCC----------------TCTCCATAAATT-----A------CACACTT--------------------A----------------ATT---GACGGGAATTTTCGCCAATGTAAATAATC-TTCGTTACTCA--CACAACACTTCCTTTA---C-----A-CCAAACTATTTT-------------CAACAACT-------------------------------------GAAA---CAACAAC-------GTGTACAGAGTTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGCC---ACC---CGCTAATA
droKik1 scf7180000302401:506448-506761 + TGTCT-----GTCATTGACTGTT--GTTA---------TTTGAATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCCCCTATT----T--ACGAACAT------AT--A--CATCATCGAACATATATATCTCCTCCTCA-----T-----A------CCCATCC--------ATG----------------------TCT-ATT---GCTGTGAATTTTTGCCAATGTAAATAATC-AACGCTAATTA--CATGACAACACCACCACC--ATCACA------CCTTCTT-------------CGACAACAAATACAACCATAAACAAAATCGAAATCGAAAATAATAAAAA---CTGCAAC-------GTGTACAGGGTTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGCC---ACC---TGCTAATA
droAna3 scaffold_12916:2018773-2018908 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATAATCCTGCGCCACCCA--CTCGACAACATTTCCATC--ATCACTC-----------C-------------CAAAATCA-------------------------------------AATC---CAACCACGTGTGTGTTGTACAGAGTCGAGTCATCCTCACCGTCATCGCTG---GGGGCGCCGCCACCACC---CGCTAACA
droBip1 scf7180000396728:672837-673072 - TATAT-----CTAACTCCTCGTT-----------------T-AAATGAACTG-T-GTTCTGATCTCGTTT------ACCCATTTCT--CTCCCCTGTT----G---CCAACAT------ATCTC--CATTATC----------------TCC-CATTATC-------------------T--------------------A----------------ATT---G----------------CTGTAAATAATC-TGCGCCACTCA--CTCGACAACATCTC-ATC--ATCACTC-----------C-------------CAAAATCC-------------------------------------AATC---CAACCACGTGTGTGTTGTACAGAGTCGAGTCATCCTCACCGTCATCGCTG---GGGGCGCCGCCACCACC---CGCTAACA
dp5 4_group2:110562-110858 + TGCTC---------------ATTTTGCTCATATTTATA-TCAAATTGAACTACT--TTTTGATCTCGTTT-------TACATTTCT--CTCCCCCGTTT---T--ACGTACGTATAAATACCAT--CATTACG----------------TCTACATAATACATAATACTCGTA------T--ATCT--ATG----------------------TTTAATTCCACTTGTGCATTTCGGCCAATGTAAATAATC-TGCGCCACTTC--AA-------TCCAATCAC---------AAAATTCA---CCAACACAAAATTCCAACAA----------------------------------------AAACTTCAACAAC-------GGTTACAGAGTTGAGACATCTTCACCGTCATCGCGG---GGGGGGGCGCCAACACCCAACGCTAATA
droPer2 scaffold_8:3783888-3784180 - TGCTC---------------ATTTTGCTCATATTTATA-TCAAATTGAACTACT--TTTTGATCTCGTTT-------TACATTTCT--CTCCCCCGTTT---T--ACGTACGTATAAATACCAT--CATTACG----------------TCTACATAATACATAATACTCGTA------T--ATCT--ATG----------------------TTTAATTCCACTTGTGCATTTCGGCCAATGTAAATAATC-TGCGCCACTTCAATCCAATCACTTCACCAAC---------ACAAAATT---C-------------CAACAAAA-------------------------------------ACTT---CAACAAC-------GGTTACAGAGTTGAGACATCTTCACCGTCATCGCGG---GGGGGGGCGCCAACACCCAACGCTAATA
droWil2 scf2_1100000004851:134236-134447 + CAATTTTCACAGTACTAAATGGTTTAA------------------TGA-TAT-T--TTTTGGTTTTATTTCATCATAATTATTTTC--CTCTCTTTAT----TATACTATA--------ACTAC--GATAAAT--------------------------------------------------------------------------------TTTAAATATGTGTATGCATATTTGACAATGTAAATAATC-A-----------------------------C---------ACAA---------------------------TC---------------------------------------AC---GAACAAT-------GTGTACAGAGTTGAATCATCTTCACCGTCATCGGGACTTGGGACGCCAAC---ATC---TGCTAATA
droVir3 scaffold_13246:173627-173853 + TATT----------------------------------------------------TTTTGATTTCGTTT-------TGCATTTTT--CTTCCCCTTGTAAT-ATATGTAA--------ATTAC--CATTGTC----------------TTTACAC------------------AC--AT----ACATATGTATTATATAATGACATCAATAATTTAAATTATTTAAATTATACTTGTTAATGTAAATAACT-TGCGCCGCATA--CTCT--------TCCCAC----------------------------------------------------------------------------------A---TAATTGT-------GTGTAAAGAGTTGAGTCATCTTCTCCGTCATCGCTG---ACGGCGCAAAC---TTC---CGATAACA
droMoj3 scaffold_6500:212832-213080 + GGTAC-----AGAAGT----ATTCTAATTA--------TAC-GTTTTAATTACT--TTTTGTTTTTGTTT-------TACATTTCT--CTCCCCCTGT-AAA-ATATGAAA--------ACTTA--CATTGCCTGAC------------AC---AC------------------AC--AT--ACACATTTGTATTTTATAATGACATATAAAATTTAAATTAATTAAATTATACTCGTTAATGTAAATAACT-TGCGCCACATT--T------------------------------------------------------------------------------------------------------------GT-------GCATAAAGAGTTGAGTCATCTTCGCCGTCATCGTCG---CTGTCGGCGCAAACTTC---CGATAACA
droGri2 scaffold_15252:17069580-17069848 - TATAT-----ATAT-GT-GTGTTCTCATTC--------TGA-GTTTTAATTACA--ATTTGATTTCGTTT-------TGCATTTCT--CTCCCCTTGT-AAT-ATATGTAA------AAACTGT--CACTACC----------------TCTACAC--------------------ACTTACGTACATATGTATTATAAATTGGCATCAATAATTAAAATTAATTTA--TATACTTCTTAATGTAAATAATTTTGCGCCGTATA--CTCACCACAT-----------------AC---------------------------------------------------------------------AAA---AAATTGT-------GTGTAAAGAGTTGAGTCATCTTCACCGTCATCGCTG---ACGGCGCAAAC---TTC---CGATAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TATTT-----TTTACTTATTGTTTTGTATA------------------ATTT-TTCTTAAAATCTTATTT-------AACATATAT--CTGTCCTATT----T--ACAAAA--------ACCAC--C--TGTC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CGT---TTTGTGAATTTTTGCCAATGTATATAATT-TTCGCTATTTA--TTCGACAACTCTACTCTC---------ACAATCCA---T-------------CAACAACA-------------------------------------AAAA---CAACAAC-------TTGAACAGAGTTGAGTCGCCTTCACCGTCATCGCTA---GGGACACCGCA---ACC---CGCTAATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................TTGAACAGAGTTGAGTCGCCT..............................................2114.00400200000002000000
............................................................................................................................................................................................................................................................................................................................................................................AAA---CAACAAC-------TTGAACAGAGTTGAGT...................................................2613.00300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCGCCTTCACCGTCA.....................................2113.00300000000003000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTTCACCGTCATCGC.................................2013.00300300000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGTTGAGTCGCCT..............................................1712.00200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................AA---CAACAAC-------TTGAACAGAGTTGAGT...................................................2512.00200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGAGTTGAGTCGCCTT.............................................2112.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................AAA---CAACAAC-------TTGAACAGAGT........................................................2112.00200100000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGAGTTGAGTCGCCTTCACC.........................................2512.00200100000001000000
.......................................................................................................................................................................................................................................................................A--TTCGACAACTCTACTCTC---------ACAATCCA---...................................................................................................................................................2711.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTA---GGGACACCGCA---ACC---........2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGCCTTCACCGTCATCGCT................................2411.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACAGAGTTGAGTCGCCTTC............................................2111.00100000000001000000
..TTT-----TTTACTTATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AC-------TTGAACAGAGTTGAGT...................................................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACAGAGTTGAGTCGCCTTCACCGT.......................................2511.00100000000001000000
...........................................................................................................AAAA--------ACCAC--C--TGTC----------------TCTCATT.......................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................TTGAACAGAGTTGAGTCGCCTTCACC.........................................2611.00100000000000100000
..................................................................................................................................................................................................................................................................TATTTA--TTCGACAACTCTACT..........................................................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACAGAGTTGAGTCGCCTTCACCG........................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGCTA---GGGACACCGCA---..............2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGCCTTCACCGTCATCGCTG---TC..........................2711.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTTGAGTCGCCTTCACC.........................................2111.00100000000001000000
...............................................................................................................................................................................................................................................AATGTATATAATT-TTCGCTAT..............................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................AAC-------TTGAACAGAGTTGA.....................................................1711.00100000000001000000
..............................................................................ACATATAT--CTGTCCTATT----T--AC........................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AACAAC-------TTGAACAGAG.........................................................1611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................AAAA---CAACAAC-------TTGAACAGAG.........................................................2111.00100000000001000000
...................................................................................................................................TC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CG........................................................................................................................................................................................................................................2511.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGCCTTCACCGTCATCGCTA---............................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGCTA---GGGACACCGCA---ACC---C.......2511.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------TTGAACAGAGTTGAGTCGC................................................2611.00100000000001000000
..................................................................................................................................................................................................................................GTGAATTTTTGCCAAT.................................................................................................................................................................................................................1611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCGTCATCGCTA---GGGAC.......................2111.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTCGCCTTCACCGTC......................................1911.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTGAGTCGCCTTCACCG........................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................T-------------CAACAACA-------------------------------------AAAA---CAAC.............................................................................1790.11100000000001000000
droSec2
TATTT-----TTTACTAATTGATTTGTATA------------------ATTT-TTCTTAAAATCTTATTT-------AACATATAT--CTTTCCTATT----T--ACAAAA--------ACCAC--C--TGTC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CGT---TTTGTGAATTTTTGCCAATGTATATAATT-TTCGCTATTTA--TTCGACAACTCTACTCTC---------ACAATCCA---T-------------CAACAACA-------------------------------------AAAA---CAACAAC-------TTG--AAGAGTTGAGTCGCCTTCACCGTCATCGCTA---GGGACACCGCA---ACC---CGCTAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................TCGACAACTCTACTCTC---------TGT...........................................................................................................................................................2050.2010001
dm3
TCTTT-----TGTACTTATTATTTTGTAAA--------ATT-TGTAGAAATT-TTCTTAAAATCTTATTT-------TACTTTTAT--CTTTCCTATT----T--ATAAAA--------ACCAC--A--TGTC----------------TCTCATTAATGT-----A------CCCTATA--------------------A----------------CAT---TTTTTGAATTTTTGGCAATGTATATAATT-TTTGCTATTTA--TTCGACAACTCTACTCTC---------ACAAACCA---T-------------CAACAACA-------------------------------------AAAA---CAACAAC-------TTGAACAGAGTTGAGTCGCCTTCACCGTCATCGCTA---GGGACACCGCA---ACC---CGCTAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCGTCATCGCTA---GGGA........................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGTCGCCTTCACCGTC......................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAAA--------ATT-TGTAGAAATT-TT............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTTTGAATTTTTGGCAATGTATATAA.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCTA---GGGACACCGCA---ACC---C.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCGTCATCGCTA---GGGACACCGCA---..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTTGAGTCGCCTTCACCG........................................2211.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................T----T--ATAAAA--------ACCAC--A--TGTC----------------TCT...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGTTGAGTCGCCTTCAC..........................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCTTT-----GGTACTCATTATTTTGTAAG--------A--AAAATTAATTT-T--TTTGTATCTCATTT-------TACATTTGC--CTTTCCTGTT----T--ATGAAA--------ACCAC--CA--------------------------------T-----A------CCCACTT--------------------A----------------CAT---TTTGTGAATTTTTGCCAATGTATATAATA-TTTGCTATTTA--TTCGACAACTCTACTCTC---------ACAAATCA---T-------------CAACAACC-------------------------------------AAAA---CAACCAC-------TTGAACAGAGTTGAGTCGCCTTCATCGTCATCGCTA---GGGACTCCGCA---ACC---CGCTAATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCTTT-----GGTACTCATTATT-------------------AGTAGAAC---T--TTTTGTTCTCATTT-------TATATTTAT--CTTTCTTGTT----T--ACACAC--------ACAACATT--AGTT----------------TCTCATTAATGT-----A------CCCAATA--------------------A----------------CA----TATGTGAATTTTTGCCAATGTATATAATA-TTCGCTATTTA--TTCGATAACTCTACTCTC---------ACAAATCA---T-------------CAACAACC-------------------------------------AATA---CAACCAC-------TTGAACAGAGTTGAGTCGTCTTCACCGTCATCGCTA---GGGGCTCCGCA---ACC---CGCTAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TCCGT-----AGTACTCATTATTTTGTTTT--------ATT-AATTGAATTG-T--TTTTGATCTTATTT-------TACATTTTT--CTCTCCTATT----T--ACGAAC--------ATCAC--CATTGTC----------------TCTCCATAATAT-----A------CTCCCTT--------------------A----------------TTT---GCTGTGAATTATTGCCAATGTATATAATC-TTCGCCATTTA--CACGACATTTCA-------T-----ATTGAAATCATCTT-------------TAATATCC-------------------------------------A--A---CAACAAC-------CTGTACAGAGTTGAGTCATCCTCACCGTCATCACTA---GGGGCTCCGCA---ACT---CGCTAATASizeHit CountTotal NormTotal
No Reads
droBia1
TCTTT-----GGTACTCATTATATTGTTCA--------TTTAAATTGAATTG-T--TTTTGATCTTGTTT-------TACATTTTT--CTCTCCTATT----T--ACAAAC--------ATCTA--CATTGTC-----------------CTCCATATACT-----A------CCCATTT--------------------A----------------ATT---GCTGTGAATTTTTGCCCATGTAAATAATC-TTCGACACTTA--CACGACA-CACTACTCTTAT-----ACTTAAATCATCTT-------------CAACATCC-------------------------------------AAAC---GAACAAC-------CTGTACAGAGTTGAGTCATCCTCCCCGTCATCGCTA---GGGGCGCCGCC---ACC---CGCTAATGSizeHit CountTotal NormTotal
No Reads
droTak1
TCTTTT----GGTATTAATTATTTTGTTGA--------TTTAAATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCTCTTGTT----T--ACGAAC--------ATCAC--CATTGTC----------------CCTCCATAATCT-----A------CCCATTT--------------------A----------------ATT---GCCGTGAATTTCTGTCAATGTAAATAATC-TCCGCCACTTA--CACGACATCACTACACTTAC-----ACCCAAATCATCTT-------------CGACAACC-------------------------------------AAAC---CAACAAC-------CTGTACAGAGTTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGCC---ACC---CGCTAATASizeHit CountTotal NormTotal
No Reads
droEle1
TCTTT-----GGTACTTATTATTTTGTTTA--------CTC-AGTTTAATTA-T--TTTTGATCTCGTTT-------TACATTCTTCTCTCTCCTATT----T--ACGAACAT------ATCAT--CATTGTT----------------TCTTCATAATCT-----A------CACAATT--------------------A----------------ATT---TCTGTGAATTTTTGCCAATGTAAATAATC-TTCGCTACCTT--CACAACAACACAATAC---C-----ACCCAAATCATCTT-------------TAACAACC-------------------------------------AAAA---CAACAAC-------GTATACAGAGTTGAGTCATCCTCACCGTCATCGCTA---GGGCCGCCGGA---ACC---TGCTAATASizeHit CountTotal NormTotal
No Reads
droRho1
TCTTT-----GGTATCCATTATTTTGTTTA--------ATT-AATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCTCCTGTT----T--ACGAACAA------ATCAC--CATTGTT----------------TCTTCATAATCA-----A------CCCATTT--------------------A----------------ATT---GCTGTGAATTTTTGCCAATGTAAATAATC-TCCGCCACATA--CACAACAACACTACCA---C-----ACCCAAACCATCTT-------------TAACAACC-------------------------------------AAAA---CAACAAC-------GTGTACAGAGCTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGGA---ACC---CGCTAATASizeHit CountTotal NormTotal
No Reads
droFic1
TCTGT-----GGTACTCATTATTTTGTTTG--------ATT-AATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCCCCTGTT----T---TGAACTT------GTCAC--AATTGCC----------------TCTCCATAAATT-----A------CACACTT--------------------A----------------ATT---GACGGGAATTTTCGCCAATGTAAATAATC-TTCGTTACTCA--CACAACACTTCCTTTA---C-----A-CCAAACTATTTT-------------CAACAACT-------------------------------------GAAA---CAACAAC-------GTGTACAGAGTTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGCC---ACC---CGCTAATASizeHit CountTotal NormTotal
No Reads
droKik1
TGTCT-----GTCATTGACTGTT--GTTA---------TTTGAATTGAATTG-T--TTTTGATCTCGTTT-------TACATTTTT--CTCCCCTATT----T--ACGAACAT------AT--A--CATCATCGAACATATATATCTCCTCCTCA-----T-----A------CCCATCC--------ATG----------------------TCT-ATT---GCTGTGAATTTTTGCCAATGTAAATAATC-AACGCTAATTA--CATGACAACACCACCACC--ATCACA------CCTTCTT-------------CGACAACAAATACAACCATAAACAAAATCGAAATCGAAAATAATAAAAA---CTGCAAC-------GTGTACAGGGTTGAGTCATCCTCACCGTCATCGCTA---GGGGCGCCGCC---ACC---TGCTAATASizeHit CountTotal NormTotal
No Reads
droAna3
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATAATCCTGCGCCACCCA--CTCGACAACATTTCCATC--ATCACTC-----------C-------------CAAAATCA-------------------------------------AATC---CAACCACGTGTGTGTTGTACAGAGTCGAGTCATCCTCACCGTCATCGCTG---GGGGCGCCGCCACCACC---CGCTAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATAT-----CTAACTCCTCGTT-----------------T-AAATGAACTG-T-GTTCTGATCTCGTTT------ACCCATTTCT--CTCCCCTGTT----G---CCAACAT------ATCTC--CATTATC----------------TCC-CATTATC-------------------T--------------------A----------------ATT---G----------------CTGTAAATAATC-TGCGCCACTCA--CTCGACAACATCTC-ATC--ATCACTC-----------C-------------CAAAATCC-------------------------------------AATC---CAACCACGTGTGTGTTGTACAGAGTCGAGTCATCCTCACCGTCATCGCTG---GGGGCGCCGCCACCACC---CGCTAACASizeHit CountTotal NormTotal
No Reads
dp5
TGCTC---------------ATTTTGCTCATATTTATA-TCAAATTGAACTACT--TTTTGATCTCGTTT-------TACATTTCT--CTCCCCCGTTT---T--ACGTACGTATAAATACCAT--CATTACG----------------TCTACATAATACATAATACTCGTA------T--ATCT--ATG----------------------TTTAATTCCACTTGTGCATTTCGGCCAATGTAAATAATC-TGCGCCACTTC--AA-------TCCAATCAC---------AAAATTCA---CCAACACAAAATTCCAACAA----------------------------------------AAACTTCAACAAC-------GGTTACAGAGTTGAGACATCTTCACCGTCATCGCGG---GGGGGGGCGCCAACACCCAACGCTAATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGCTC---------------ATTTTGCTCATATTTATA-TCAAATTGAACTACT--TTTTGATCTCGTTT-------TACATTTCT--CTCCCCCGTTT---T--ACGTACGTATAAATACCAT--CATTACG----------------TCTACATAATACATAATACTCGTA------T--ATCT--ATG----------------------TTTAATTCCACTTGTGCATTTCGGCCAATGTAAATAATC-TGCGCCACTTCAATCCAATCACTTCACCAAC---------ACAAAATT---C-------------CAACAAAA-------------------------------------ACTT---CAACAAC-------GGTTACAGAGTTGAGACATCTTCACCGTCATCGCGG---GGGGGGGCGCCAACACCCAACGCTAATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAATTTTCACAGTACTAAATGGTTTAA------------------TGA-TAT-T--TTTTGGTTTTATTTCATCATAATTATTTTC--CTCTCTTTAT----TATACTATA--------ACTAC--GATAAAT--------------------------------------------------------------------------------TTTAAATATGTGTATGCATATTTGACAATGTAAATAATC-A-----------------------------C---------ACAA---------------------------TC---------------------------------------AC---GAACAAT-------GTGTACAGAGTTGAATCATCTTCACCGTCATCGGGACTTGGGACGCCAAC---ATC---TGCTAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGGGACTTGGGACGCCAAC---..............1920.50110000
droVir3
TATT----------------------------------------------------TTTTGATTTCGTTT-------TGCATTTTT--CTTCCCCTTGTAAT-ATATGTAA--------ATTAC--CATTGTC----------------TTTACAC------------------AC--AT----ACATATGTATTATATAATGACATCAATAATTTAAATTATTTAAATTATACTTGTTAATGTAAATAACT-TGCGCCGCATA--CTCT--------TCCCAC----------------------------------------------------------------------------------A---TAATTGT-------GTGTAAAGAGTTGAGTCATCTTCTCCGTCATCGCTG---ACGGCGCAAAC---TTC---CGATAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GGTAC-----AGAAGT----ATTCTAATTA--------TAC-GTTTTAATTACT--TTTTGTTTTTGTTT-------TACATTTCT--CTCCCCCTGT-AAA-ATATGAAA--------ACTTA--CATTGCCTGAC------------AC---AC------------------AC--AT--ACACATTTGTATTTTATAATGACATATAAAATTTAAATTAATTAAATTATACTCGTTAATGTAAATAACT-TGCGCCACATT--T------------------------------------------------------------------------------------------------------------GT-------GCATAAAGAGTTGAGTCATCTTCGCCGTCATCGTCG---CTGTCGGCGCAAACTTC---CGATAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TATAT-----ATAT-GT-GTGTTCTCATTC--------TGA-GTTTTAATTACA--ATTTGATTTCGTTT-------TGCATTTCT--CTCCCCTTGT-AAT-ATATGTAA------AAACTGT--CACTACC----------------TCTACAC--------------------ACTTACGTACATATGTATTATAAATTGGCATCAATAATTAAAATTAATTTA--TATACTTCTTAATGTAAATAATTTTGCGCCGTATA--CTCACCACAT-----------------AC---------------------------------------------------------------------AAA---AAATTGT-------GTGTAAAGAGTTGAGTCATCTTCACCGTCATCGCTG---ACGGCGCAAAC---TTC---CGATAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:28 PM