ID:

dsi_26542

 Coordinate:

3l:11490808-11490966 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.9 -38.8 -38.8

Flybase annnotation

five_prime_UTR [3l_11490719_11490807_+]; exon [3l_11490719_11490807_+]; exon [3l_11490967_11491730_+]; five_prime_UTR [3l_11490967_11491065_+]; intron [3l_11490808_11490966_+]

No Repeatable elements found

mature
  1. dsi_32080  2r:17115118-17115132 +
  2. dsi_32090  2r:17115341-17115355 -
  3. dsi_26542  3l:11490903-11490917 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAGACAAAAAAGCGAATTCAAGGTGAAGTAATTGGCTTCAAAATAACAGGTAATAGCAGTTGATTGCCAAATCGGCTTGCTCATTTGCTCGAGTGGCTGACTAACTTCAAATTGTGCGTGCAAATCGAGCACAGAAGTGCCCAAATCAGAAGGTTGCGTCAGGAGGGAATTATTGATTTTATTCGTCATTTGTTTTCGGTCGCCACAGCTACTCGACTTTGTTTTTGTTGAGGCGGAGCTGCCTGAGTCACCACCACA
**************************************************((((.(((((((((((....))))))).))))...))))....(((((.((((.(((((....(((((.((.....)).))))))))))((...((((....)))))).......((((((...((((.......))))...)))))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................................GACTTTGTTTTTGTTGAGGCGGAGCT.................. 26 0 1 4.00 4 4 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGTTTTTGTTGAGGCGGAGCT.................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.......TAAAAGCGAATTCAAGGTGAAGTAAT.................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................TTTTTGTTGAGGCGGAGCT.................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................AGGTGAAGTAATTGGCTT............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................TCAGCACGTTGCGTCAGG............................................................................................... 18 2 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................................................................................TCAGAAGGTTGCGTGA................................................................................................. 16 1 3 0.67 2 0 0 1 0 0 0 1 0
.................................................................................................................................................ATCAGAAGGTTGCGT................................................................................................... 15 0 3 0.33 1 0 0 0 0 0 0 1 0
...............................................................................................................................................ATATCAGAAGGTTGCGT................................................................................................... 17 1 3 0.33 1 0 0 1 0 0 0 0 0
.............................................................................................................................................CCAAATCGGAAGGTTGC..................................................................................................... 17 1 7 0.29 2 0 0 2 0 0 0 0 0
................................................................................................................................................TATCAGAAGGTTGCG.................................................................................................... 15 1 7 0.29 2 0 0 0 0 0 0 0 2
..................................................................................................................................................TCGGAAGGTTGCGTC.................................................................................................. 15 1 10 0.10 1 0 0 1 0 0 0 0 0
......................................................................................TGCTCGAGAGGCTTACT............................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 0 1
...............................................................................................................................................AAATCGGAAGGTTGCGTT.................................................................................................. 18 2 12 0.08 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TTATATTCGTCATTTGAT................................................................ 18 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

ACTCTGTTTTTTCGCTTAAGTTCCACTTCATTAACCGAAGTTTTATTGTCCATTATCGTCAACTAACGGTTTAGCCGAACGAGTAAACGAGCTCACCGACTGATTGAAGTTTAACACGCACGTTTAGCTCGTGTCTTCACGGGTTTAGTCTTCCAACGCAGTCCTCCCTTAATAACTAAAATAAGCAGTAAACAAAAGCCAGCGGTGTCGATGAGCTGAAACAAAAACAACTCCGCCTCGACGGACTCAGTGGTGGTGT
**************************************************((((.(((((((((((....))))))).))))...))))....(((((.((((.(((((....(((((.((.....)).))))))))))((...((((....)))))).......((((((...((((.......))))...)))))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
........................ACTCCATTGACCGAAGT.......................................................................................................................................................................................................................... 17 2 9 0.11 1 1 0
..........................TCCATTAACCGAAGT.......................................................................................................................................................................................................................... 15 1 11 0.09 1 1 0
.....................................................................................................................GCATGTTTAGCTCGT............................................................................................................................... 15 1 12 0.08 1 1 0
............................................................................................................................................GGGTTTAGCGATCCAACGCA................................................................................................... 20 3 14 0.07 1 1 0
...................................CGAAGTTTCATTGTC................................................................................................................................................................................................................. 15 1 18 0.06 1 0 1
.........................CTACATTGACCGAAGT.......................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0
....................................................................................................................................................................................................AGCCAGCGGTGTCGTG............................................... 16 2 20 0.05 1 0 1
................................................................................................................................................TTAGTCTTCGAACGTAG.................................................................................................. 17 2 20 0.05 1 1 0

Generated: 04/24/2015 at 10:25 AM