ID:

dsi_26521

 Coordinate:

3l:7227549-7227698 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7227123_7227548_-]; CDS [3l_7227123_7227548_-]; intron [3l_7227549_7228470_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGTGCGTTTGGGCTTGCCGGTAACATTTCATTAGCGATTTGTCATCGCTGTAATTAACAGTGTTGCTAAAGGTAGTTACACTGAACAAAACGATACATGTTAAAGGTATTTTATATACTTTAATTTGTAACTTTCTTTTGAAATTTAAATGTGCGATCATATAAGTTCTTTCACTGACACTCGAAATCCATTTTTACAGGTGAAGAAGCGCCAGCAGCGCGTTCTCATGATCCTGGACAGCAAGAACAT
**************************************************........((((((.((((....)))).))))))..(((((.((((((.(((((((.(((.....)))))))))).))))....))))))).((((((.(((......))).))))))................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
..............................................................................................................................................................................................................................TTCTCATGATCCTGGACAGCAAGAACA. 27 0 1 2.00 2 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................AGCAGCGCGTTCTCATGATCCTGGA............ 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................CATGATCCTGGACAGCAAGAAC.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCTCATGATCCTGGACATCAAGAAC.. 25 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................GCGTTCTCATGATCCTGGA............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGTGAAGAAGCGCCAGCAGCGCGTT.......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCGTTCTCATGATCCTGGAC........... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................CATGATACTGGACAGCAAGAA... 21 1 1 1.00 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................AGCGCGTTCTCATGATCCTGGACAGC........ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................AGGTGAAGAAGCGCCAGCAGCG.............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCTCATGATCGTGGA............ 15 1 5 0.20 1 0 0 0 0 0 0 1 0
...............TGCCGGTACCATTACAT.......................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................CATCATTCTGAACAGCAAGA.... 20 3 18 0.06 1 0 0 0 0 0 0 0 1
....................................................................................AACAAAACGATGCAT....................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................CTCGGTTTCATGATCCTGG............. 19 3 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CACACGCAAACCCGAACGGCCATTGTAAAGTAATCGCTAAACAGTAGCGACATTAATTGTCACAACGATTTCCATCAATGTGACTTGTTTTGCTATGTACAATTTCCATAAAATATATGAAATTAAACATTGAAAGAAAACTTTAAATTTACACGCTAGTATATTCAAGAAAGTGACTGTGAGCTTTAGGTAAAAATGTCCACTTCTTCGCGGTCGTCGCGCAAGAGTACTAGGACCTGTCGTTCTTGTA
**************************************************........((((((.((((....)))).))))))..(((((.((((((.(((((((.(((.....)))))))))).))))....))))))).((((((.(((......))).))))))................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................TTAAACATTGAAAGA................................................................................................................. 15 0 6 1.50 9 8 0 0 1 0 0 0 0
............................................................................................................................................................................................................................GCATGAGTCCTAGGACTTG........... 19 3 12 1.42 17 0 3 13 0 0 1 0 0
...............................................................................................TGTACAATTTCCATAAAATAT...................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAATGGCCACTGCTTCAC....................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................AAAATGTCCCCTTCTTTG........................................ 18 2 8 0.13 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................ATGTCAACTTGTTCGCCGTC................................... 20 3 12 0.08 1 0 0 0 1 0 0 0 0
.......................................................................................................................AATTTAAACATTGAAAGA................................................................................................................. 18 1 12 0.08 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................AGCTTTAGGTAAGAAT..................................................... 16 1 14 0.07 1 0 0 0 0 0 0 1 0
............................................................................................................................................................TAGTATGTTCTAGAAAG............................................................................. 17 2 16 0.06 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCGGCAAGAGTCCTAGGAC.............. 19 3 18 0.06 1 0 0 0 0 0 1 0 0
........................................................................CAACAATGTGACTTTTCTTG.............................................................................................................................................................. 20 3 19 0.05 1 0 0 1 0 0 0 0 0
..................................................................................ACTTGTTTTGCTTTGTGC...................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................AGGACATGTCGTACTTG.. 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 11:05 PM