ID:

dsi_2652

 Coordinate:

2l:8945173-8945466 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.0 -2.4

Flybase annnotation

exon [2l_8945467_8945964_-]; CDS [2l_8945467_8945818_-]; exon [2l_8944764_8945172_-]; CDS [2l_8944764_8945172_-]; intron [2l_8945173_8945466_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCACCGAGGGGCACGCCCCCTCCACCACTGGGAGTCGCAATGACGAAGGTTTGTCCGCCCCACGGGGCCTATATACATATGTATGTTGTTATACCAATCTGCTGGCAAGCAGATCACCCGAATTACAGAGGAATTCCGGTTTTACACGCAAAATTGTGAAATCCATATTATATTTGGTATTCATCATACGCTCTTGTTGCCATTTTCACTTTTAATTTTAATCTAACTGGTGTCCGGCTTTGTCACTAACTCAACTTTGCTTTCTAACTCCGCACCGCACATTTCAATGCACGCAAAATGCATATCCCCACATCCACACCCTGTGCCGGTCACTGTATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGCATCCTG
**********************************************************************************************************************************************************************..........(((((..((...........)).)))))....................************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
......................................................................................................................................................................ATATTATATTTGGTA..................................................................................................................................................................................................................... 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTCACTTTTAATTTTAAT.......................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................TGAGGAAGGTTCGTCCGCTC............................................................................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................TCTCTGTATCTAGCCTA.............................................. 17 2 9 0.33 3 0 0 2 0 0 0 0 1 0
....................................................................................................................................................................CCATATTATATTTGGGATCCT................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................TGACACGCAAAATTGTGA......................................................................................................................................................................................................................................... 18 1 4 0.25 1 0 0 0 0 0 1 0 0 0
..........................................TGAGGAAGGTTCGTCCGC.............................................................................................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................AGGACTGCAGCATCGG...................... 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................................CGGGTAACTGTATCGAGG................................................. 18 3 20 0.15 3 0 0 2 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................................................................................AGCAGTGGGAGCGTCCT. 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0
.....................................................................................................TGGTAGCAAGCACATCACC.................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGGTGGCTCCCCGTGCGGGGGAGGTGGTGACCCTCAGCGTTACTGCTTCCAAACAGGCGGGGTGCCCCGGATATATGTATACATACAACAATATGGTTAGACGACCGTTCGTCTAGTGGGCTTAATGTCTCCTTAAGGCCAAAATGTGCGTTTTAACACTTTAGGTATAATATAAACCATAAGTAGTATGCGAGAACAACGGTAAAAGTGAAAATTAAAATTAGATTGACCACAGGCCGAAACAGTGATTGAGTTGAAACGAAAGATTGAGGCGTGGCGTGTAAAGTTACGTGCGTTTTACGTATAGGGGTGTAGGTGTGGGACACGGCCAGTGACATAGATCCGATGGAATGTCTCCTGTCGTCGTAGCCACGGTCGCCACCCTCGTAGGAC
**************************************************************************************************************************************************************************..........(((((..((...........)).)))))....................********************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902008
ovaries
 M053
female body
 M024
male body		 M023
head
 M025
embryo
 SRR902009
testis
 GSM343915
embryo
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCCT........ 16 1 7 45.29 317 200 77 39 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................AACCACTGTCGCCACCCT........ 18 2 8 6.13 49 7 10 8 20 2 0 0 0 0 0 0 2 0
.................................................................................................................................................................................................................................................................................................................................................................................GCCACTGTCGCCACCCT........ 17 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................GCCACTGTCGCCACCCTA....... 18 2 6 2.17 13 8 0 0 0 0 0 0 0 1 2 2 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCC......... 15 1 12 1.50 18 18 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................AAACCACTGTCGCCACCCT........ 19 3 20 1.10 22 2 4 1 11 3 0 0 0 0 0 0 0 1
...................................................................................................................................................TGCGGTTTAACAGTTTAGGTACAAT.............................................................................................................................................................................................................................. 25 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................ATTGAGGCGTGGCGTGTA.............................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................CCACAAAGGCGGGGTGCCGCGG................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............GCGGGGGAGGTGGTGA........................................................................................................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCCTCGT..... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TACCATAAGTAGTCTGCGAGAT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TAAGTGGTACGCGGGAACAA.................................................................................................................................................................................................. 20 3 7 0.43 3 0 0 0 0 0 0 0 2 1 0 0 0 0
......................................................................................................................................................................................AGTGGTATGCGGGAACAA.................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................GAAACCACTGTCGCCACCCT........ 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCCTTGTCG... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAAATGTGCGTTTGAAGA........................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGTAGCGTGTAAAGTGACGA..................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTAAGGCTTTAGGGATAATA............................................................................................................................................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................AGGTGGCGACTCTCAGC................................................................................................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCCTAG...... 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................AACCACTGTCGCCACCC......... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................ATAAGTAGGCTGCGAGA...................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................CCGAAGCAGTGATGGAG............................................................................................................................................ 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................CCCACTGTCGCCACCCT........ 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCCTTGAA.... 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................ACCACTGTCGCCACCCTC....... 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................TAACCACTGTCGCCACCCTA....... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CAGACCGAAGCAGTGACTG.............................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................CCGAAGGGGCGGGGTGCCC...................................................................................................................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................AAACGATAGATGGAGGC........................................................................................................................ 17 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GGCATTGATCGGATGGAA.......................................... 18 3 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......CGCCCCGTGCGCGGGAGGG................................................................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCGCCACCCTCCG..... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................TCCTGTCATGGTAGCC...................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:8945123-8945516 - dsi_2652 CGCCACCGAGGGGCACG------------------------------------------------CCCCC---------TCCACCACTGGGAGTCGCAATGACGAAGGTTTGTCCGCCCCACGGGG---------------------------C-------------------------------------CTATATACATATGTATGTTGT---------TATA----CCAATCT------------------G-CTGGCAAGCAG-----ATCACCCGAATTACAGAGGAATTCCGGTTTT-----------------------------------------------------ACACGCAAAATTGTGAAAT-CCATATTATA---TTTGGTAT------T--CA----------------------------------------------------------------------------T-CA-TACGCTCTTGTTGCCATTTT---CACT--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTC--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATATC-C-----------------CCACATCC-AC--AC----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGGGAGCATCCTG
droSec2 scaffold_3:4711238-4711635 - CGCCACCGAGGGGCACG------------------------------------------------CCCCC---------TCCACCACTGGGAGTCGCAATGACGAAGGTTTGTCCGCCCCACGGGG---------------------------C-------------------------------------CTATATACATATGTATGTTGT---------TATA----CCAATCT------------------G-CTGGCAAG--GATGTCACCACCCGAATTACAAAGGAATTCCGGTTTT-----------------------------------------------------ACACGCCAAATTGTCAAATTCCATAGTATA---TTCGGTAT------T--CA----------------------------------------------------------------------------T-CA-TGCCTTCTTGTTGCCATTTT---CACT--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTC--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATATC-C-----------------CCACATCC-AC--AC----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGGGAGCATTCTG
dm3 chr2L:9252301-9252684 - CGCCATCGAGGGCCACG------------------------------------------------CCCCC---------TCCGCCACTGGAAGTCGCAATGACGAAGGTTTGTTGG-------------------------------------C-------------------------------------CTAT----ATATGTATGCTGT---------TATA----CCAATCT------------------G-CTGGCAAG--GATGTCATCACCCGAATTACAAATGAATACCGGTTTT-----------------------------------------------------ACATGCCAAATTGGCAAATTCCATTGTATA---TTCGGTAT------T--CA----------------------------------------------------------------------------T-CA-TACCCTCTTGTTGCCATTTT---CACT--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATATA------------------CCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGGGAGCATCCTG
droEre2 scaffold_4929:9857535-9857738 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCCATTTT---CACG--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATCTC-C------------CACACCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTCT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGCGAGCATCGCG
droYak3 2L:11919779-11919993 - CATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-CTCTGGTTGCCATTTT---CACT--------TTTGATTTGAAT-CTAACTGGTGTACGGCTAT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------C--ATGCACTCA--AAA-------------TGCATACC-C------------CACATCCACGTCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGCGGAAGCATACTG
droEug1 scf7180000406904:259262-259737 - CACCACCGACGGACGCG------------------------------------------------CACCC---------TCAGCCACTGGGAGTCGCAATGACGAAGGTTTGTTCGCCTTTCAAGG---------------------------C-----------------------------------------------ATGTATGTAGT---------ATTA----GCAAC-TATTATTTATAACCCAAATGTATAGCAAA--AATGTTACGT----------------------------TAAACAGCCTTTCAGT-----GGATTTTGGAAAGTATGCGCAG-----CCTT-----------------------------------------CCAAAGGAATTTCCCTTGTTAAACAAAATTTCAGTTGAAAAACTTAGATTTCCAAGTTTAAGAAAGGCCTTTGTATTACATATTACATTTAAACCCACCTTGATTTGATGCT--GCTCT--------TTTAATTTTACT-CTAAATGGTGTCCGGCTTT--GTG--ACTAACTT---AACTTTGCTTTCTAA-CT-CCTCACCGCACAT-TT------C------------------------------A--TTCAACTCA--AAA-------------TGCACCAC-C---------------ACCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGTACCTATCTAGGCTACCTTACAGAGGACAGCAGCATCGGAA------------CCAGCGGCAGTAGCATTCTG
droBia1 scf7180000302408:3964185-3964384 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTCATTTTGC-TACT--------TTT-ATATTACT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTA---AACTCTGCTTTCTAA-CT-CCGCACCGCACAC-TC------T------------------------------A--ATCCACTCA--AAA-------------CGCACCGC-C-----------------CACCATCC-AC--AC----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGGG------------CCAGCGGCGGCAGCATCCTG
droTak1 scf7180000415702:265384-265645 + ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAT-TAGTGTTATACCCTTCGGTCTCCGAAGT--CA----------------------------------------------------------------------------G-CCAACCCGTTTTGATCTCATTTTGC-TGCT--------CTTATTATTACT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------T------------------------------A--AACCACTCA--AAACAAAAAAACCAAATGCACCAC-C--------------------CATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGGG------------CCAGCGGCGGCAGCATCCTG
droEle1 scf7180000491186:2187291-2187508 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTACATTTT--GCCCT--------TTAAATTGTATT-TTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--CTGCATTCAAAAAA-------------TGCACCAC-CACCACCCATATGCGCATCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGGG------------CCAGCGGCGGCAGTCTCCTG
droRho1 scf7180000778060:29652-29858 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTCTCATTTT--GCCCT--------TTTAATTTTTCT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-TCGCACCGCACAT-TT------C------------------------------A--CTGCACTGC--AAA-------------TGCACCAC-C------------GATATCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGTTACCTTACAGAGGACAGCAGCATTGGAG------------CCAGCGGCGGCAGCCTCCTG
droFic1 scf7180000453122:2653-2845 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT--------TTTAATTTAACT-CTTACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CC-CCGCATCGCACAT-TT------C------------------------------A--CTGAATACGTAAAA-------------CGCACCACCC------------CACAACCACATCC-AC--GT----------------CCTGTGCC-------GGT--CACTCT----ATCTAGGCTACCTTACAGAGGACAGCAGCCTCGGAG------------CGAGCGGCGGCAGCATCCTG
droKik1 scf7180000302679:1124730-1125085 - TACCACCGATGGACATG------------------------------------------------CCGCCGTAGCCACCACCGCCGTTGGAAGTCGCTATGATGAAGGTAGGTACAG---------GATTGAGTAAGCCA--------------------------------------------------------------GCTCTGGAATTTCTGTTTTTTAA----CCACTCT------------------G-G--------------------------------------------------------------------GGAAG---------AGGAAAAGGGCGGTAAC--------------TTAA-------------CCTTTGGCCAGCAAAGGCA-------------------------------------------------------------------------------------------------CATCCA---TGCC--------TTTAATTTTACTTTTAACTGGTGTCCGGCTTC--GTG--ACTAACTC---AACTTTGCTTTCTAA-CA-CCGCAC-----ACAC-------------------ACACATCGCACTTTTC---ATAC--------------------------TGCACCAC-C-------------------ATTACC-ACAAAT----------------CCCGCGCC-------GGT--CACTGTA-C-ATCTAGGCTACCTTACAGAGGACAGCAGCCTCGGGG------------CTAGCGGTGGCAGTAGCCTG
droAna3 scaffold_12943:592470-592813 - CACAACAGGCGG-TACG-----------------------------------------------------------------GGTACAGGCAATCGCAATGACGAAGGTTTGTACGA---------AATTT-GTAACTCCTTCGAAAGAAGGA-----------------------------------------TATTCATATG--GGTTGC---------TTTATGGTCCAGTCT------------------T-TTGGTGTT-------------------------GAAATTATGGTTTT------------------------------------------------------------------------TTCATTTTATA-------ATAT------T--CA----------------------------------------------------------------------------T-----------TAACTGCTTTTTT---GTCT--------TTTACTTTAAAT-CTAACTGGTATTCGGTTCT--TTG--ACTAACTT---ATCTTTGCTTTCTAA-CCCCCACATCGCTCACACT------C------------------------------A--CTGCACCC--------------------------------------------GTCCACGATC-AC--TT----------------CCCCTGTC---GCC---C--AAATGTATC-ATCTAGGCTACCTTACAGAGGACAGCAGCCTGGGAG------------CGAGCGGCAGTAGCATGCTT
droBip1 scf7180000396535:136818-137109 + CACAACAGGCGG-TACG-----------------------------------------------------------------GGTACAGGCAATCGCAATGACGAAGGTTTGTATGG---------ATT----------------------------------------------------------------------------------------------TT----CTAATTA------------------T-TTTGGAAG--GA---------------------GG------------------------------------------------AGGTACAG-----CTTCATAGGT----TTATG----------------------------------------------------------------------------------------------------------------------------------ATAATTAT---TGCATAAATGGCT----TTATATT-TTCACTGGTTCTTGGCTCT--TTG--ACTAACTT---ATCTTTGCTTTCTAA-CCCCCACATTGCACACACT------C------------------------------A--CTGCACCC-----------------------------------------TGCA--CCCATCC-AT--CC----------------CCTGTCGC-------CCC--AAATGTATC-ATCTAGGCTACCTTACAGAGGACAGCAGCCTGGGAG------------CCAGCGGCAGCAGCATGCTA
dp5 4_group5:1574259-1574429 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATT-CTAACTGGTGCGCGGATCT--CT----CTAACTT---AAATTTGCTTTCTAA-CC-TTTCATCACACAT-TC------C------------------------------A--TTGCACAAA--TAA---------------CATCA--------------------CCACA-CA-AT--AT----------------GCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGTAGCCTGGGAG------------CCAGCGGCGGCAGCATGCTG
droPer2 scaffold_5:5983006-5983176 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATT-CTAACTGGTGCGCGGATCT--CT----CTAACTT---AAATTTGCTTTCTAA-CC-TTTCATCACACAT-TC------C------------------------------A--TTGCACAAA--TAA---------------CATCA--------------------CCACA-CA-AC--AT----------------GCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGTAGCCTGGGAG------------CCAGCGGCGGCAGCATGCTG
droWil2 scf2_1100000004521:264752-264937 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTGCGGTTTACGGTA--ACTAACGCTATAATTTTCCCCCCTAAATCACCACATTCCCCCT-CT------C------------------------------A--CTGCAC--------------------------CAT-C---------------CTTCACATCCACC--AT-CCTTATGTTTTGATCCCTGGCTC---GCTTGGT--GACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGTTTGGGGGGAC---------TCAGCTCGGCCAGCACTCTG
droVir3 scaffold_12963:659836-659968 - CATCCTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----GCACGCAC----------------------------------------------------ACA-------------TGCACACG-T-----------------ACACCCAT-AC--AT----------------TTGCTGTTG--GTCTGGCCACACTCT----ATTTAGGCTACCTTACAGAGGACAGCAGCCTGGGCGGTGCCATCAGCAGCAACAGCGTAAGCACCATA
droMoj3 scaffold_6500:12191392-12191745 - TACAACAAATGGCGGCGACGTCGCCGGCGGCAGCAGCACCAACTGCG----------CAG-----------CTGTAACCGCAGCGGCCAGCAGTCGCAATGACGAAGGTATTTGTTT---------GT-------------------------------------------------------------------------TTGTTTGTTGTTTTTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGTCAATATTTT---TGGC--------TTTGCTTCT---------TGGTGGCGCGGTCT--CTAACCTCTGCTC--TAATCTTCTA----------CTAATTCTAACAT-TTTTGTCATCATTTACACACACATACAT--------GCAC--ATGCGCGCA--CACACA------------TACA-A-C------------CACATCCACATCT-AC--GTCA--------------CATTTGCTGGT----GCA--CACTCT----ATTTAGGCTACCTTACAGAGGACAGCAGCCTGGGCGGCGCCGTCAGCTGCAGCAGCGCCAGCACCCTG
droGri2 scaffold_15126:2949754-2950229 + CACAACCACCGGCAACG---------GGGGCAGCAACAGCAATTGCAATATAAAGAACAGCAGCGCACTC------ACAGCATCGAGCAACAGTCGCAATGATGAAGGTAATTTCCATTCTCAT-----------------------------CATTCATTCAGAAAGTGCACCCAACTTGATATTGATATTGATATTCGTCTGTCTGTCGA---------TGTC----AAGCTTT------------------A-CTGACA--------------CTCGATCAA-A-------AATGCTCTCCTTAGCCTATATTCAGTTATGTTAAAG---------GAGAATTGAGCAGTCGG--------------CTAGTT---------------CCGACTGCGG-----------------------------------------------------------------------------------------------TGATTGTATTTAT---TGCA--------TTTATTTATATT-CTCTTTGGTGACGCGTTCT--CTA--CTCTGCTT---TAC--TGCTTCTTCT-CT-CTAATCCCCACAT-TA------TCATCTACTCACACAC---------------G--TCGCACT-T--AAA-------------CACACACT-C-----------------GCACACAT-AT--AC----------------CACTTGCTGGCATCTGGTCACACTAC----ATTCAGGCTACCTTACAGAGGACAGCTGCTTGAGCG---------------------GGGGCGCTATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGCCACCGAGGGGCACG------------------------------------------------CCCCC---------TCCACCACTGGGAGTCGCAATGACGAAGGTTTGTCCGCCCCACGGGG---------------------------C-------------------------------------CTATATACATATGTATGTTGT---------TATA----CCAATCT------------------G-CTGGCAAGCAG-----ATCACCCGAATTACAGAGGAATTCCGGTTTT-----------------------------------------------------ACACGCAAAATTGTGAAAT-CCATATTATA---TTTGGTAT------T--CA----------------------------------------------------------------------------T-CA-TACGCTCTTGTTGCCATTTT---CACT--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTC--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATATC-C-----------------CCACATCC-AC--AC----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGGGAGCATCCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................ATATTATA---TTTGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1512.00200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---CACT--------TTTAATTTTAAT-.......................................................................................................................................................................................................................................................................................................1911.00100001000000000000
droSec2
CGCCACCGAGGGGCACG------------------------------------------------CCCCC---------TCCACCACTGGGAGTCGCAATGACGAAGGTTTGTCCGCCCCACGGGG---------------------------C-------------------------------------CTATATACATATGTATGTTGT---------TATA----CCAATCT------------------G-CTGGCAAG--GATGTCACCACCCGAATTACAAAGGAATTCCGGTTTT-----------------------------------------------------ACACGCCAAATTGTCAAATTCCATAGTATA---TTCGGTAT------T--CA----------------------------------------------------------------------------T-CA-TGCCTTCTTGTTGCCATTTT---CACT--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTC--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATATC-C-----------------CCACATCC-AC--AC----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGGGAGCATTCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CGCCATCGAGGGCCACG------------------------------------------------CCCCC---------TCCGCCACTGGAAGTCGCAATGACGAAGGTTTGTTGG-------------------------------------C-------------------------------------CTAT----ATATGTATGCTGT---------TATA----CCAATCT------------------G-CTGGCAAG--GATGTCATCACCCGAATTACAAATGAATACCGGTTTT-----------------------------------------------------ACATGCCAAATTGGCAAATTCCATTGTATA---TTCGGTAT------T--CA----------------------------------------------------------------------------T-CA-TACCCTCTTGTTGCCATTTT---CACT--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATATA------------------CCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGGGAGCATCCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCGGTG------------CCAGCGGT............2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTACAGAGGACAGCAGCATCGGT.................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACAGCAGCATCGGTG------------CCAGC...............2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACAGCAGCATCGG..................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCGGTG------------CCAGCGGTGG..........2112.0020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACAGCAGCATCGGTG------------....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAGGACAGCAGCATCGG..................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-------GGT--CACTGT----ATCTAG..............................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGGAAGTCGCAATGACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAGCAGCATCGGTG------------C...................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTACAGAGGACAGCAGCATCGG..................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-CTAACTGGTGTCCGGCTTT--GTG--ACT..........................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCGGTG------------CCAGCGGTGG..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCGGTG------------CCAGCGGTGGGAGC......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACAGCAGCATCGGTG------------CC..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................................................................TCCGCCACTGGAAGTCGCAATGACGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTTACAGAGGACAGC..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGACGAAGGTTTGTTGG-------------------------------------C-------------------------------------CTAT----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CG------------------------------------------------CCCCC---------TCCGCCACTGGAAGTCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCAGCATCGGTG------------CCAGCGG.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTACAGAGGACAGCA.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCGGTG------------CCAGCGGTGGGAGCA.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACAGAGGACAGCAGCA......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCGGTG------------CCAGCGGTGGGAGC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCATCGGTG------------CCAGCGG.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................GTTTGTTGG-------------------------------------C-------------------------------------CTAT----ATATGTATGCTGT---------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGGTG------------CCAGCGGTGGGGT.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CCAGCGGTGGGAGCATCC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGAGGACAGCAGCATCGGTG------------CCA.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CCAGCGGTGGGAGCATCCT.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAGCAGCATCGGTG------------CC..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGGACAGCAGCATCGGTG------------CCAGC...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TATA---TTCGGTAT------T--CA----------------------------------------------------------------------------T-CA-TA.....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................CCC---------TCCGCCACTGGAAGTCGCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCGGTG------------CCAGCGGG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGGCAAATTCCATTGTATA---TTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAGGACAGCAGCATCGGT.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAGCAGCATCGGTG------------CCAGC...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACAGAGGACAGCAGCATCGGT.................................2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTACCTTACAGAGGACA............................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCGGTG------------CCAGCGGTGGGAGC......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACAGCAGCATCGGT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGGTG------------CCAGCGGTGGGAG.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGGACAGCAGCATCGGTG------------CCA.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCGGTG------------CCAGCGGTGGGAG.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GTCATCACCCGAATTACACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTTAAT-CTAACTT................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCCATTTT---CACG--------TTTAATTTTAAT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--ATGCACGCA--AAA-------------TGCATCTC-C------------CACACCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTCT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGTGCGAGCATCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACAGAGGACAGCAGCATC....................................2111.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGACAGCAGCATCGGTG------------....................2111.0011000000
droYak3
CATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-CTCTGGTTGCCATTTT---CACT--------TTTGATTTGAAT-CTAACTGGTGTACGGCTAT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------C--ATGCACTCA--AAA-------------TGCATACC-C------------CACATCCACGTCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGTG------------CCAGCGGCGGAAGCATACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC-C------------CACATCCACGTCC-AC--AT----------------CCTG..............................................................................................2511.00101000000000
droEug1
CACCACCGACGGACGCG------------------------------------------------CACCC---------TCAGCCACTGGGAGTCGCAATGACGAAGGTTTGTTCGCCTTTCAAGG---------------------------C-----------------------------------------------ATGTATGTAGT---------ATTA----GCAAC-TATTATTTATAACCCAAATGTATAGCAAA--AATGTTACGT----------------------------TAAACAGCCTTTCAGT-----GGATTTTGGAAAGTATGCGCAG-----CCTT-----------------------------------------CCAAAGGAATTTCCCTTGTTAAACAAAATTTCAGTTGAAAAACTTAGATTTCCAAGTTTAAGAAAGGCCTTTGTATTACATATTACATTTAAACCCACCTTGATTTGATGCT--GCTCT--------TTTAATTTTACT-CTAAATGGTGTCCGGCTTT--GTG--ACTAACTT---AACTTTGCTTTCTAA-CT-CCTCACCGCACAT-TT------C------------------------------A--TTCAACTCA--AAA-------------TGCACCAC-C---------------ACCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGTACCTATCTAGGCTACCTTACAGAGGACAGCAGCATCGGAA------------CCAGCGGCAGTAGCATTCTGSizeHit CountTotal NormTotal
No Reads
droBia1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTCATTTTGC-TACT--------TTT-ATATTACT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTA---AACTCTGCTTTCTAA-CT-CCGCACCGCACAC-TC------T------------------------------A--ATCCACTCA--AAA-------------CGCACCGC-C-----------------CACCATCC-AC--AC----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGGG------------CCAGCGGCGGCAGCATCCTGSizeHit CountTotal NormTotal
No Reads
droTak1
ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAT-TAGTGTTATACCCTTCGGTCTCCGAAGT--CA----------------------------------------------------------------------------G-CCAACCCGTTTTGATCTCATTTTGC-TGCT--------CTTATTATTACT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------T------------------------------A--AACCACTCA--AAACAAAAAAACCAAATGCACCAC-C--------------------CATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGGG------------CCAGCGGCGGCAGCATCCTGSizeHit CountTotal NormTotal
No Reads
droEle1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTACATTTT--GCCCT--------TTAAATTGTATT-TTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-CCGCACCGCACAT-TT------C------------------------------A--CTGCATTCAAAAAA-------------TGCACCAC-CACCACCCATATGCGCATCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGCATCGGGG------------CCAGCGGCGGCAGTCTCCTGSizeHit CountTotal NormTotal
No Reads
droRho1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTCTCATTTT--GCCCT--------TTTAATTTTTCT-CTAACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CT-TCGCACCGCACAT-TT------C------------------------------A--CTGCACTGC--AAA-------------TGCACCAC-C------------GATATCCACATCC-AC--AT----------------CCTGTGCC-------GGT--CACTGT----ATCTAGGTTACCTTACAGAGGACAGCAGCATTGGAG------------CCAGCGGCGGCAGCCTCCTGSizeHit CountTotal NormTotal
No Reads
droFic1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT--------TTTAATTTAACT-CTTACTGGTGTCCGGCTTT--GTG--ACTAACTC---AACTTTGCTTTCTAA-CC-CCGCATCGCACAT-TT------C------------------------------A--CTGAATACGTAAAA-------------CGCACCACCC------------CACAACCACATCC-AC--GT----------------CCTGTGCC-------GGT--CACTCT----ATCTAGGCTACCTTACAGAGGACAGCAGCCTCGGAG------------CGAGCGGCGGCAGCATCCTGSizeHit CountTotal NormTotal
No Reads
droKik1
TACCACCGATGGACATG------------------------------------------------CCGCCGTAGCCACCACCGCCGTTGGAAGTCGCTATGATGAAGGTAGGTACAG---------GATTGAGTAAGCCA--------------------------------------------------------------GCTCTGGAATTTCTGTTTTTTAA----CCACTCT------------------G-G--------------------------------------------------------------------GGAAG---------AGGAAAAGGGCGGTAAC--------------TTAA-------------CCTTTGGCCAGCAAAGGCA-------------------------------------------------------------------------------------------------CATCCA---TGCC--------TTTAATTTTACTTTTAACTGGTGTCCGGCTTC--GTG--ACTAACTC---AACTTTGCTTTCTAA-CA-CCGCAC-----ACAC-------------------ACACATCGCACTTTTC---ATAC--------------------------TGCACCAC-C-------------------ATTACC-ACAAAT----------------CCCGCGCC-------GGT--CACTGTA-C-ATCTAGGCTACCTTACAGAGGACAGCAGCCTCGGGG------------CTAGCGGTGGCAGTAGCCTGSizeHit CountTotal NormTotal
No Reads
droAna3
CACAACAGGCGG-TACG-----------------------------------------------------------------GGTACAGGCAATCGCAATGACGAAGGTTTGTACGA---------AATTT-GTAACTCCTTCGAAAGAAGGA-----------------------------------------TATTCATATG--GGTTGC---------TTTATGGTCCAGTCT------------------T-TTGGTGTT-------------------------GAAATTATGGTTTT------------------------------------------------------------------------TTCATTTTATA-------ATAT------T--CA----------------------------------------------------------------------------T-----------TAACTGCTTTTTT---GTCT--------TTTACTTTAAAT-CTAACTGGTATTCGGTTCT--TTG--ACTAACTT---ATCTTTGCTTTCTAA-CCCCCACATCGCTCACACT------C------------------------------A--CTGCACCC--------------------------------------------GTCCACGATC-AC--TT----------------CCCCTGTC---GCC---C--AAATGTATC-ATCTAGGCTACCTTACAGAGGACAGCAGCCTGGGAG------------CGAGCGGCAGTAGCATGCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............CG-----------------------------------------------------------------GGTACAGGCAATCGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
CACAACAGGCGG-TACG-----------------------------------------------------------------GGTACAGGCAATCGCAATGACGAAGGTTTGTATGG---------ATT----------------------------------------------------------------------------------------------TT----CTAATTA------------------T-TTTGGAAG--GA---------------------GG------------------------------------------------AGGTACAG-----CTTCATAGGT----TTATG----------------------------------------------------------------------------------------------------------------------------------ATAATTAT---TGCATAAATGGCT----TTATATT-TTCACTGGTTCTTGGCTCT--TTG--ACTAACTT---ATCTTTGCTTTCTAA-CCCCCACATTGCACACACT------C------------------------------A--CTGCACCC-----------------------------------------TGCA--CCCATCC-AT--CC----------------CCTGTCGC-------CCC--AAATGTATC-ATCTAGGCTACCTTACAGAGGACAGCAGCCTGGGAG------------CCAGCGGCAGCAGCATGCTASizeHit CountTotal NormTotal
No Reads
dp5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATT-CTAACTGGTGCGCGGATCT--CT----CTAACTT---AAATTTGCTTTCTAA-CC-TTTCATCACACAT-TC------C------------------------------A--TTGCACAAA--TAA---------------CATCA--------------------CCACA-CA-AT--AT----------------GCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGTAGCCTGGGAG------------CCAGCGGCGGCAGCATGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTACAGAGGACAGTAGCCTGGGAG------------CCAGCGGCG...........3611.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGACAGTAGCCTGGGAG------------C...................2211.0010000000001
droPer2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATT-CTAACTGGTGCGCGGATCT--CT----CTAACTT---AAATTTGCTTTCTAA-CC-TTTCATCACACAT-TC------C------------------------------A--TTGCACAAA--TAA---------------CATCA--------------------CCACA-CA-AC--AT----------------GCTGTGCC-------GGT--CACTGT----ATCTAGGCTACCTTACAGAGGACAGTAGCCTGGGAG------------CCAGCGGCGGCAGCATGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTGCGGTTTACGGTA--ACTAACGCTATAATTTTCCCCCCTAAATCACCACATTCCCCCT-CT------C------------------------------A--CTGCAC--------------------------CAT-C---------------CTTCACATCCACC--AT-CCTTATGTTTTGATCCCTGGCTC---GCTTGGT--GACTGT----ATCTAGGCTACCTTACAGAGGACAGCAGTTTGGGGGGAC---------TCAGCTCGGCCAGCACTCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGGTTTACGGTA--ACTAACGC.....................................................................................................................................................................................................................................................................2411.00100010
droVir3
CATCCTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----GCACGCAC----------------------------------------------------ACA-------------TGCACACG-T-----------------ACACCCAT-AC--AT----------------TTGCTGTTG--GTCTGGCCACACTCT----ATTTAGGCTACCTTACAGAGGACAGCAGCCTGGGCGGTGCCATCAGCAGCAACAGCGTAAGCACCATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGGGCGGTGCCATCAGC.....................2111.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGCAACAGCGTAA........2011.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACCTTACAGAGGACA............................................1911.001000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--GTCTGGCCACACTCT----ATTTAG..............................................................2311.001000000000000000000000000000000000000000000000000100000000000000
droMoj3
TACAACAAATGGCGGCGACGTCGCCGGCGGCAGCAGCACCAACTGCG----------CAG-----------CTGTAACCGCAGCGGCCAGCAGTCGCAATGACGAAGGTATTTGTTT---------GT-------------------------------------------------------------------------TTGTTTGTTGTTTTTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGTCAATATTTT---TGGC--------TTTGCTTCT---------TGGTGGCGCGGTCT--CTAACCTCTGCTC--TAATCTTCTA----------CTAATTCTAACAT-TTTTGTCATCATTTACACACACATACAT--------GCAC--ATGCGCGCA--CACACA------------TACA-A-C------------CACATCCACATCT-AC--GTCA--------------CATTTGCTGGT----GCA--CACTCT----ATTTAGGCTACCTTACAGAGGACAGCAGCCTGGGCGGCGCCGTCAGCTGCAGCAGCGCCAGCACCCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................CGCAGCGGCCAGCAGTCGCAATGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGGCGGCGCCGTCAGC.....................2011.001100000
droGri2
CACAACCACCGGCAACG---------GGGGCAGCAACAGCAATTGCAATATAAAGAACAGCAGCGCACTC------ACAGCATCGAGCAACAGTCGCAATGATGAAGGTAATTTCCATTCTCAT-----------------------------CATTCATTCAGAAAGTGCACCCAACTTGATATTGATATTGATATTCGTCTGTCTGTCGA---------TGTC----AAGCTTT------------------A-CTGACA--------------CTCGATCAA-A-------AATGCTCTCCTTAGCCTATATTCAGTTATGTTAAAG---------GAGAATTGAGCAGTCGG--------------CTAGTT---------------CCGACTGCGG-----------------------------------------------------------------------------------------------TGATTGTATTTAT---TGCA--------TTTATTTATATT-CTCTTTGGTGACGCGTTCT--CTA--CTCTGCTT---TAC--TGCTTCTTCT-CT-CTAATCCCCACAT-TA------TCATCTACTCACACAC---------------G--TCGCACT-T--AAA-------------CACACACT-C-----------------GCACACAT-AT--AC----------------CACTTGCTGGCATCTGGTCACACTAC----ATTCAGGCTACCTTACAGAGGACAGCTGCTTGAGCG---------------------GGGGCGCTATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................CGTCTGTCTGTCGA---------TGTC----AAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110

Generated: 05/19/2015 at 01:44 AM