ID:

dsi_26474

 Coordinate:

x:10498322-10498471 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.6

Flybase annnotation

exon [x_10498472_10498690_+]; five_prime_UTR [x_10498472_10498598_+]; intron [x_10498125_10498471_+]

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+
mature
  1. x:10174186-10174205 +
  2. dsi_26474  x:10498447-10498466 +
  3. x:12126492-12126511 +
  4. x:13094490-13094509 -
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGTGACAAATGCATAGAGAATTAAACAAAAATAATACAAGTGCGCAGCCTTGCTGTAAAATTATTTAAATAGACTGCTAAATCATATGCAGCCGACACCTGGCAGCCGTCTCGCTCTGTCGCGCATGTGTTTGTTTTTGTTTGCCAACTGTTTCTCATCTTGCCTCTCTCCCCCTCTCTCCCCCTCTCTCTCTCTTTAGCACTCTCTGTTGCAGCGCCAGCACATCCCGTTTCCCAATTGGATCCAGCC
*************************************************************************************************************************************..............................................................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 O001
Testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................................................................TCTCTCCCCCTCTCTCTCTC....................................................... 20 0 4 9.00 36 36 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTCTCTCCCCCTCTCTCTCTC....................................................... 21 0 2 2.00 4 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTCTCCCCCTCTCTCCCC.................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTCTCCCCCTCTCTCTCTCTTT.................................................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.....................................................................................................................................GTTTTTGTTTGCCAACTG................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................CCTCTCTCCCCCTCTCTCT.......................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................CAACTGTTTCTCATCTTGCCT.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................TTTGCCAACTGTTTCTCATCTT........................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................CTCTCTCCCCCTCTCTCCCC.................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGCCACTCTCTGTTGCAGCGCCAGCACAA........................ 29 3 1 1.00 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................GCCTCTCTCCCCCTCTCTCCCC.................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GAATAGAGAGTTAAACAAAAA.......................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TCCCAATTGGATCCAGCC 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTGTTGCAGCGCCAGCA........................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................TGCCACTCTCTGTTGCAGCGCCA.............................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................GTCTTGCTCTGTCGCCCA............................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1
..............TAGAGAGTTAAACAA............................................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
........AACGAATAGAGAGTTAAAC............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................TCTCTCCCCCTCTCTCGT......................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTCTCCCCCTCTCTCGT................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCCACTGTTTACGTATCTCTTAATTTGTTTTTATTATGTTCACGCGTCGGAACGACATTTTAATAAATTTATCTGACGATTTAGTATACGTCGGCTGTGGACCGTCGGCAGAGCGAGACAGCGCGTACACAAACAAAAACAAACGGTTGACAAAGAGTAGAACGGAGAGAGGGGGAGAGAGGGGGAGAGAGAGAGAAATCGTGAGAGACAACGTCGCGGTCGTGTAGGGCAAAGGGTTAACCTAGGTCGG
*******************************************************..............................................................************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 M023
head
 O001
Testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................GGGGAGAGAGGGGGAGAGA............................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................CGTCGGCTGTGGACCGTCGGCAGAGCGA...................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................GGCTGTGGCCCGTCCGCA............................................................................................................................................ 18 2 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................GGGGAGAGAGGGGGAGAGAG........................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................GAGAGAGAGAAATCGTGA.............................................. 18 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................TCGCGGTCGTGTTGGGGAA.................. 19 2 3 0.33 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................GTCGTGGAGGGCAAAG................ 16 1 7 0.14 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TCGTGTTGGGCATAGG............... 16 2 20 0.10 2 0 0 0 0 0 2 0
................................................................AAATTTAGCTGATGATT......................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 0 2 0
.........................................................................TGAGGATTTAGTACACATC.............................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................CAAAGGGTTAATCTA...... 15 1 15 0.07 1 0 1 0 0 0 0 0
......................................................................................................................................................................................GGGAGAGAGAGAGAAA.................................................... 16 0 18 0.06 1 0 1 0 0 0 0 0
..GACTGTTTACGTGTCTCTCA.................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:10498272-10498521 + dsi_26474 CGGTG-ACAAATGCATAGAGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGCGC-----------------------AGCCTTGC------------------------TGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTGCCTCTCTCCCCCT--C-----T--CTC--CC--CCTCTC--------TCTCTCTTTAGCACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGTTTCCCAA------TTGGATC--------CAG---------------------------------------------------------------------CC
droSec2 scaffold_15:1752742-1752995 + CGGTG-ACAAATGCATAGAGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGCGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTGCCTCTCTCCCCCTCT-CTTCCA--A------TCTCCCTC--------TCTCTCTTTAGCACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGTTTCCCAA------TTGGATC--------CAG---------------------------------------------------------------------CC
dm3 chrX:11048873-11049116 + TGGTG-ACAAATGCATAGAGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGCGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTCCCTCT-----------CTTCCA--C------TCTCCCTC--------TCTCTCTTTAGCACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGTTTCCCAA------TTGGACC--------CAG---------------------------------------------------------------------CC
droEre2 scaffold_4690:4081848-4082070 - CGGAG-ACAAATGCACAGGGTATTA--------------------AACAA-----------------AAATAA--------TACAAGTGTGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCCA-CCTC---------------------CCCCTC------T--------------------CACACTCTG----------------------TTGCAGCGC-CAGCACATCCAGAATCCCAA------TTGGACC--------CAG---------------------------------------------------------------------CC
droYak3 X:11077963-11078203 - CAGTG-ACAAATGCACAGGGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGTGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTCCACC-----------------T--CCCTCTC------TCCC-C----TCTTTCTTTCACACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGATTCCCAA------TTGGACA--------CAG---------------------------------------------------------------------CC
droEug1 scf7180000409631:180136-180401 + CGGTG-ACGAATGCACAGGGAATAA--------------------AACAA-----------------A---AA--------GACAAGTGCAC-----------------------AGCCTTGCA-----TTG-CCATAAACAAATAAAGTAAAATGATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGCCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTCTTTCTCTATCCCA------CCA--CTC------TCTCTC-A-C----TCTGTCTTCCCCCCCTTCTC----------------------ATATAGCGC-CAGCACATCCCGATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------CC
droBia1 scf7180000301345:796184-796421 - CGGTG-ACGAATGCACGG---------------------------------------------------------------CACAACTG-GC-----------------------AGCCTTGCA-----GCGCCCATAAACAAATAAAGTAAATTCATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGGCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTC-------TCCCCCT--C-----T--CTC--TC------TCTCTC----TCTTTCTCTCGC-----CTC----------------------TCGCAGCGC-CAGCACATCCCGATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------AC
droTak1 scf7180000415909:14220-14454 + CGGTG-ACACA--CACAGGGAA--A--------------------AACAA---------AAAA----TAATAA--------GAAAAGT--GC-----------------------AACCTTGCA-----GCG-CCATAAACAAATAAAGTAAAATTATTTAAATAGACTGCTAAATCATCT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTCCCGTC-----------------T--CCCTCCC------T--------------------------CGC----------------------ACGCAGCG--CAGCACATCCCGATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------GC
droEle1 scf7180000491193:690243-690487 - CGGTG-ACGAATGCACAGGAAA---------------------------------------------AAAACA--------CACAAGTGTGC-----------------------AGCCTTGCCTTGCAGCG-CCATAAACAAA--AAGTAAAATTATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCGGCCGT--------------------CTCGCTCTGTCGCGCG----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTCCCCTCT-------------------CTC--TC------TCGT--CCCT---ATC-------CTCTCTC----------------------ATGCAGCGC-CAGCACATCCCGATTCCCAA------TTGGACA--------CGA---------------------------------------------------------------------CC
droRho1 scf7180000779986:30630-30870 + CGGTG-ACGAATGCACAGGAA------------------------------------------------AAAA--------CACAAGTGTGC-----------------------AGCCTTGCCTTGCAACG-CCATAAACAAATAAAGTAAAATTATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCG----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTCCCCTC-----------------T--CCC--T--------G-A--CCCT---CTC-------CTCTCTC----------------------ACGCAGCGC-CAGCACATCCCCATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------CT
droFic1 scf7180000453882:1011059-1011300 + CGGTG-ACGAATGCACAGGAAA-------------------------------------------------AA--------AACAAGTGTGC-----------------------AGCCTTGCA-----TTG-CCATAAACAAATTAAGTAAAGTTATTTAAATAGACTGCGAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGCCGCGCG----------TGTGTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCCCACCTCC-----------CTTC----CTC--C----------------------------AACTCTCTC----------------------ACGCAGCTC-CAGCACATCCCGATTCCCAA------TTGGACCAGGAAACCCAA---------------------------------------------------------------------CA
droKik1 scf7180000302393:76795-77029 - CAGTG-CAGAGTGCATG-----------------------------------------------------------------------------------------------------------------CG-CTATAAACAAAT-----AAAATCATTTAAATAGACAT-ATAATCATTC---------------------------GC-GACGCTGGCAGCGAAGCCGGCAGCGCA--------------------GTCGACACCTTGCAACCGT--------CACCGTCT--GTCTCGCTTCTTCGCGAG----------T--GCTTTTGTTTT-------TGTTTGTTTGCTAACT---------------------------------TTTTC--ATTTCGCCA-TCTCCCC------TT--C--CTC--T----CACTC--------TCTCTCATCAG-------------------------------------CC--TCCCACATCCTCACTTGGAA------TTGGACC----------------------------------------------------------------------------------
droAna3 scaffold_13248:2593336-2593625 + CGAAA-ATGAGAGACCAGAAA---T--------------------GACTG-----------------AAATGCAACAAACAG---------------------CCACAGCCACCCACCCACACA-----CTG-GCATAAACAAATGAAA------TATTTAAATAGAATAAATAATCATAA---------------------------GCGGACGCTGGCTGT-----------------------------------G-TGACACCTTGCGTCCAT--------CTCTCTCTCTCTCTCTCTTTGTTGCAAATGCGTGTTTGT--GTTTTTGTTTT-------TGTT----TGCTGTTGCTGTTGCTGTTGCTGCCTATCTGTCCACCTACTGTTTCTCATCTG-CCTCT-----------CTTC-TCTCTC--TC------TCTC--CC-----CTCTCC--------------------------------------GCCC-CCCCA------------------------------------CAA---------------------------------------------------------------------TC
droBip1 scf7180000396429:383706-383963 - ATA---AC---TGA---------------------------------CTA-----------------AAATGCAACA----AACACCCACCC-----------------------ACCCACACA-----CAG-CCATAAACAAATGAAA------TATTTAAATAGAATAAATAATCATAA---------------------------GCG-ACGCTG-CTG--------------CT--------------------G-TGACACCTTGCCTTGCGTCCGCAATCGCCCT----CTCTCTCTTTGTTGCAAATGCGTGT-TGT--GTTTTTGTTTT-------TGTT----TGTTG-------------------CTATCAGTCCACCTACCGTTTCTCATCTG-CCTCT-----------CTTC-T--C----TC------T----------------------------C----------------------CTCCCTAAC-CAGCAAATCC--------AATTGGAATTGG-------------A---------------------------------------------------------------------CC
dp5 XL_group1e:3378658-3378836 - CGGTG---------------------------------------------------------------------------------------------------------------------------------CATAAACAAATGAAA------TATTTAAATAGAC---ATAATCATTC---------------------------GTTGACGCTGACTGCGACGTCGACTGCACA--------------------G-TGACACCTTGCAATCTGCCCGAAACC---------------CCTTGCCGTTTG----------T--G-------TTT-------TGTT----TGCCAACT---------------------------------GTTTCATTTCTC-------------------------------------------------------------------------------------------CGCAGCAG-TT--GCATCTCATTTGGAAT------TTGAATT--------CAA---------------------------------------------------------------------AT
droPer2 scaffold_17:315912-316091 - CGGTG---------------------------------------------------------------------------------------------------------------------------------CATAAACAAATGAAA------TATTTAAATAGAC---ATAATCATTC---------------------------GTTGACGCTGACTGCGACGTCGACTGCACA--------------------G-TGACACCTTGCAATCTGCCCGAAACC---------------CCTTGCCGTTTG----------T--GTGTTT-------------GTT----TTCCAACT---------------------------------GTTTCATTTCTC-------------------------------------------------------------------------------------------CGCAGCAG-TT--GCATCTCGTTTGGAAT------TTGAATT--------CAA---------------------------------------------------------------------AT
droWil2 scf2_1100000004515:1308697-1308977 + AAGTTGAAGTACACACAGAG--TTATGTTTTATTTTTAATTTTCCAAAAAAAAAAAGGAAAGA----AAACGA--------TATAAGA--ACAACTACAATAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------AAGAAGACCAACATATTGCCTCTTGTT-GTAGACATTGCTCTCAC--------CCCT--------CTCTCTCTCT------------------------------------------------------------------------------------------------------CT-----------CTCTCT--C------TCTCCTTC--------ACTCACTCTGTCTCTCTCTATTTTGGTGCAAAGAATTCATATAAGAGGCAG-ATAATTTTACCAATTTCCAA------C---------------AGTCTTTGCTTGCCTCTCTTA-GTGTTTAG--------------------TTCGAT---------------CA
droVir3 scaffold_12723:5046490-5046649 - CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------CTCTCTCTGTCTC-------------------TTTGTCTCACTCTCTAG------AACTTACT---------------------------------CTCTCTCCCTC--TCTCT----CTCT--C-----T--CTC--TC--TCTCTC--------TCTCTCTTTCTC----------------------------------------------------TCTCTATG------CTTGTCT--------CTG----------------TCGACTGTTTGGACAAGTTATCATGAAGATGTTTCGACTCATTGAAACAAAGGCC
droMoj3 scaffold_6500:8744414-8744582 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACTACTAACTTTTCA---------------------------GTA-----------------------------------------------TCCGTTGCCTATCAGAAGA--------------------TTCTCTCTCTCTCTC-----------T--CTCTCTGTCTCTCT----CTCT----CGCTCTCT---------------------------------CTCTCTCTCCCTCTCTCT----CTCT--C-----T--CTC--TCTCTCTCTC--------TCTCTATCTATCTCTCTCTC----------------------TCGTAATGCACAGCTATTCCCAATTTTCA------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:10863824-10864057 - CAGCA-GCAGCCTTTCAAACAA------------------------ACAA---------CAATCGCC---TGC--------TGCTGTTG-CT-----------------------GCTGTTGCT-----GCTGCTGTTGCAGGAACAGGCGAATTCATCAAAGTGACCCTCAACTTCGTGCCCCAACCCTGCCTCCCCCAAAACGAATTCA-----------------------------------------------ACTT--GCCCCCCAACTGT--------------------CTCTCGCTGTCT---C----------T--GTCTCTGTCTC-------TGTC----T-----CT---------------------------------GTCTCTCTCTCT------------C---------T--CTC--TCTCTCTCTC--------TCTCTATTCAACTCTGTCTG----------------------T----------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGTG-ACAAATGCATAGAGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGCGC-----------------------AGCCTTGC------------------------TGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTGCCTCTCTCCCCCT--C-----T--CTC--CC--CCTCTC--------TCTCTCTTTAGCACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGTTTCCCAA------TTGGATC--------CAG---------------------------------------------------------------------CCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--C-----T--CTC--CC--CCTCTC--------TCTCTC.................................................................................................................................................................2049.0036000003600000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CT--C-----T--CTC--CC--CCTCTC--------TCTCTC.................................................................................................................................................................2122.00400002200000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCCCCCT--C-----T--CTC--CC--C....................................................................................................................................................................................1912.00200000200000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C-----T--CTC--CC--CCTCTC--------TCTCTCTTT..............................................................................................................................................................2212.00200001100000000000
............................................................................................................................................................................................................................................................................................................................................GTTTT-------TGTT----TGCCAACT---------------------------------G..................................................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CCT--C-----T--CTC--CC--CCTCTC--------TCT....................................................................................................................................................................1911.00100000100000000000
...................................................................................................................................................................................................................................................................................................................................................................CAACT---------------------------------GTTTCTCATCTTGCCT...................................................................................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................TT----TGCCAACT---------------------------------GTTTCTCATCTT.......................................................................................................................................................................................................................2211.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCCCCCT--C-----T--CTC--CC--C....................................................................................................................................................................................2011.00100000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTCTCCCCCT--C-----T--CTC--CC--C....................................................................................................................................................................................2211.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAA------TTGGATC--------CAG---------------------------------------------------------------------CC1811.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG----------------------TTGCAGCGC-CAGCA..............................................................................................................1811.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--C-----T--CTC--CC--CCTCTC--------TCGT...................................................................................................................................................................18200.05100000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCCCCCT--C-----T--CTC--GT--.....................................................................................................................................................................................18200.05100000100000000000
droSec2
CGGTG-ACAAATGCATAGAGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGCGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTGCCTCTCTCCCCCTCT-CTTCCA--A------TCTCCCTC--------TCTCTCTTTAGCACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGTTTCCCAA------TTGGATC--------CAG---------------------------------------------------------------------CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTG----------------------TTGCAGCGC-CAGCA..............................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................GACACCTGGCAGCCGT--------------------CTCGCTCTG..........................................................................................................................................................................................................................................................................................................................2511.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA--A------TCTCCCTC--------TCTCTCTTT..............................................................................................................................................................2311.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTG----------------------TTGCAGCGC-CAGCAC.............................................................................................................2211.0010100
dm3
TGGTG-ACAAATGCATAGAGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGCGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTCCCTCT-----------CTTCCA--C------TCTCCCTC--------TCTCTCTTTAGCACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGTTTCCCAA------TTGGACC--------CAG---------------------------------------------------------------------CCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCCCTCT-----------CTTCCA--C------T......................................................................................................................................................................................22137.00370000000000000000000000000000000000000001000000000000000000000000000000000000000000000002000000010000100022011200000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000053002123020000000000010000000000000000000000000000000000000000010000000000000000001000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................TCTCATCTTCCCTCT-----------CTTCCA--C------.......................................................................................................................................................................................22111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010030000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000210000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTCATCTTCCCTCT-----------CTTCCA--..............................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTCATCTTCCCTCT-----------CTTCCA--C------T......................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCCTCT-----------CTTCCA--C------TCT....................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA--C------TCTCCCTC--------TCTCTCTTTA.............................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCCAA------TTGGACC--------CAG---------------------------------------------------------------------C.2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTCTG----------------------TTGCAGCGC-CAGC...............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTCCCAA------TTGGACC--------CAG---------------------------------------------------------------------C.2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTT-------TGTT----TGCCAACT---------------------------------GTTTCTC............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCCCTCT-----------CTTCCA--C------TCT....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCTCT-----------CTTCCA--C------TCTCC..................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTCCCAA------TTGGACC--------CAG---------------------------------------------------------------------CC2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGC.........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................AGCCGT--------------------CTCGCTCTGTCGCGC....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG----------------------TTGCAGCGC-CAGCAC.............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGC-CAGCACATCCCGTTTCCCAA------TT.......................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTC--------TCTCTCTTTAGCACTCT......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCCTCT-----------CTTCCA--C------TCC....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCCCTCT-----------CTTCCA--..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................T--GTGTTTGTTTT-------TGTT----TGCCG.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCTG----------------------TTGCAGCGC-CAG................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA--C------TCTCCCTC--------TCTCTCT................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CCAACT---------------------------------GTTTCTCATCTTCCCTT..................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTG----------------------TTGCAGCGC-CAGCA..............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCCCTCT-----------CTTCCA--C------TC.....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................C------TCTCCCTC--------TCTCTCTTTAGC...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGTTTCCCAA------TTGG.....................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TCGCTCTGTCGCGCA----------T--GTGTT.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA--C------TCTCCCTC--------TCTCTCTTT..............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCCCTCT-----------CTTCCA--C------.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCCAA------TTGGACC--------C.........................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCTTCCCTCT-----------CTTCCA--C------T......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTC................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTCATCTTCCCTCT-----------CTTCC.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTG----------------------TTGCAGCGC-CAGCACA............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................TGCCAACT---------------------------------GTTTCTCATCTTC......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTCTG----------------------TTGCAGCGC-CAG................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CGCGCA----------T--GTGTTTGTTTT-------TGTT----TGC.........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T-----------CTTCCA--C------TCTCCCTC--------TCTCTCTTTA.............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGGAG-ACAAATGCACAGGGTATTA--------------------AACAA-----------------AAATAA--------TACAAGTGTGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCCA-CCTC---------------------CCCCTC------T--------------------CACACTCTG----------------------TTGCAGCGC-CAGCACATCCAGAATCCCAA------TTGGACC--------CAG---------------------------------------------------------------------CCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CAGTG-ACAAATGCACAGGGAATTA--------------------AACAA-----------------AAATAA--------TACAAGTGTGC-----------------------AGCCTTGC------------------------AGTAAAATTATTTAAATAGACTGCTAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTCCACC-----------------T--CCCTCTC------TCCC-C----TCTTTCTTTCACACTCTCTG----------------------TTGCAGCGC-CAGCACATCCCGATTCCCAA------TTGGACA--------CAG---------------------------------------------------------------------CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................TT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTT.......................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................TGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------.........................................................................................................................................................................................................................................................................................................2611.00101000000000
.........................................................................................................................................................................................................................................................................CCTGGCAGCCGT--------------------CTCGCTCTGTCGCG.....................................................................................................................................................................................................................................................................................................................2611.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................TT----TGCCAACT---------------------------------GTTTCTCATCT........................................................................................................................................................................................................................2111.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CACC-----------------T--CCCTCTC------TCCC-C----TCTTTC.................................................................................................................................................................2311.00101000000000
droEug1
CGGTG-ACGAATGCACAGGGAATAA--------------------AACAA-----------------A---AA--------GACAAGTGCAC-----------------------AGCCTTGCA-----TTG-CCATAAACAAATAAAGTAAAATGATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGCCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTTCTTTCTCTATCCCA------CCA--CTC------TCTCTC-A-C----TCTGTCTTCCCCCCCTTCTC----------------------ATATAGCGC-CAGCACATCCCGATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droBia1
CGGTG-ACGAATGCACGG---------------------------------------------------------------CACAACTG-GC-----------------------AGCCTTGCA-----GCGCCCATAAACAAATAAAGTAAATTCATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGGCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTC-------TCCCCCT--C-----T--CTC--TC------TCTCTC----TCTTTCTCTCGC-----CTC----------------------TCGCAGCGC-CAGCACATCCCGATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------ACSizeHit CountTotal NormTotal
No Reads
droTak1
CGGTG-ACACA--CACAGGGAA--A--------------------AACAA---------AAAA----TAATAA--------GAAAAGT--GC-----------------------AACCTTGCA-----GCG-CCATAAACAAATAAAGTAAAATTATTTAAATAGACTGCTAAATCATCT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCA----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTCCCGTC-----------------T--CCCTCCC------T--------------------------CGC----------------------ACGCAGCG--CAGCACATCCCGATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------GCSizeHit CountTotal NormTotal
No Reads
droEle1
CGGTG-ACGAATGCACAGGAAA---------------------------------------------AAAACA--------CACAAGTGTGC-----------------------AGCCTTGCCTTGCAGCG-CCATAAACAAA--AAGTAAAATTATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCGGCCGT--------------------CTCGCTCTGTCGCGCG----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTCCCCTCT-------------------CTC--TC------TCGT--CCCT---ATC-------CTCTCTC----------------------ATGCAGCGC-CAGCACATCCCGATTCCCAA------TTGGACA--------CGA---------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droRho1
CGGTG-ACGAATGCACAGGAA------------------------------------------------AAAA--------CACAAGTGTGC-----------------------AGCCTTGCCTTGCAACG-CCATAAACAAATAAAGTAAAATTATTTAAATAGACTGCAAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGTCGCGCG----------T--GTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCTCCCCTC-----------------T--CCC--T--------G-A--CCCT---CTC-------CTCTCTC----------------------ACGCAGCGC-CAGCACATCCCCATTCCCAA------TTGGACC--------CGA---------------------------------------------------------------------CTSizeHit CountTotal NormTotal
No Reads
droFic1
CGGTG-ACGAATGCACAGGAAA-------------------------------------------------AA--------AACAAGTGTGC-----------------------AGCCTTGCA-----TTG-CCATAAACAAATTAAGTAAAGTTATTTAAATAGACTGCGAAATCATAT---------------------------GCA-----------------------------------------------GCCGACACCTGGCAGCCGT--------------------CTCGCTCTGCCGCGCG----------TGTGTGTTTGTTTT-------TGTT----TGCCAACT---------------------------------GTTTCTCATCCCACCTCC-----------CTTC----CTC--C----------------------------AACTCTCTC----------------------ACGCAGCTC-CAGCACATCCCGATTCCCAA------TTGGACCAGGAAACCCAA---------------------------------------------------------------------CASizeHit CountTotal NormTotal
No Reads
droKik1
CAGTG-CAGAGTGCATG-----------------------------------------------------------------------------------------------------------------CG-CTATAAACAAAT-----AAAATCATTTAAATAGACAT-ATAATCATTC---------------------------GC-GACGCTGGCAGCGAAGCCGGCAGCGCA--------------------GTCGACACCTTGCAACCGT--------CACCGTCT--GTCTCGCTTCTTCGCGAG----------T--GCTTTTGTTTT-------TGTTTGTTTGCTAACT---------------------------------TTTTC--ATTTCGCCA-TCTCCCC------TT--C--CTC--T----CACTC--------TCTCTCATCAG-------------------------------------CC--TCCCACATCCTCACTTGGAA------TTGGACC----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CGAAA-ATGAGAGACCAGAAA---T--------------------GACTG-----------------AAATGCAACAAACAG---------------------CCACAGCCACCCACCCACACA-----CTG-GCATAAACAAATGAAA------TATTTAAATAGAATAAATAATCATAA---------------------------GCGGACGCTGGCTGT-----------------------------------G-TGACACCTTGCGTCCAT--------CTCTCTCTCTCTCTCTCTTTGTTGCAAATGCGTGTTTGT--GTTTTTGTTTT-------TGTT----TGCTGTTGCTGTTGCTGTTGCTGCCTATCTGTCCACCTACTGTTTCTCATCTG-CCTCT-----------CTTC-TCTCTC--TC------TCTC--CC-----CTCTCC--------------------------------------GCCC-CCCCA------------------------------------CAA---------------------------------------------------------------------TCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................CGCTGGCTGT-----------------------------------G-TGACACCTTG..............................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................GCTGTTGCTGTTGCTGTTGCTGCC...................................................................................................................................................................................................................................................24130.081000001
droBip1
ATA---AC---TGA---------------------------------CTA-----------------AAATGCAACA----AACACCCACCC-----------------------ACCCACACA-----CAG-CCATAAACAAATGAAA------TATTTAAATAGAATAAATAATCATAA---------------------------GCG-ACGCTG-CTG--------------CT--------------------G-TGACACCTTGCCTTGCGTCCGCAATCGCCCT----CTCTCTCTTTGTTGCAAATGCGTGT-TGT--GTTTTTGTTTT-------TGTT----TGTTG-------------------CTATCAGTCCACCTACCGTTTCTCATCTG-CCTCT-----------CTTC-T--C----TC------T----------------------------C----------------------CTCCCTAAC-CAGCAAATCC--------AATTGGAATTGG-------------A---------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
dp5
CGGTG---------------------------------------------------------------------------------------------------------------------------------CATAAACAAATGAAA------TATTTAAATAGAC---ATAATCATTC---------------------------GTTGACGCTGACTGCGACGTCGACTGCACA--------------------G-TGACACCTTGCAATCTGCCCGAAACC---------------CCTTGCCGTTTG----------T--G-------TTT-------TGTT----TGCCAACT---------------------------------GTTTCATTTCTC-------------------------------------------------------------------------------------------CGCAGCAG-TT--GCATCTCATTTGGAAT------TTGAATT--------CAA---------------------------------------------------------------------ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................TGCCGTTTG----------T--G-------TTT-------TGTT----TG..........................................................................................................................................................................................................................................................................2013.0030300000000
................................................................................................................................................................................................................................................................................................................................................T-------TGTT----TGCCAACT---------------------------------GTTTCATT...........................................................................................................................................................................................................................2112.0020000000020
......................................................................................................................................................................................................................GCTGACTGCGACGTCGACTGC.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................G-------TTT-------TGTT----TGCCAACT---------------------------------GTTT...............................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCATTTGGAAT------TTGAATT--------..........................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................TTT-------TGTT----TGCCAACT---------------------------------GTTTCATT...........................................................................................................................................................................................................................2311.0010100000000
...................................................................................................................................................................................................................................TCGACTGCACA--------------------G-TGACACCTT...............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................T---------------------------------GTTTCATTTCTC-------------------------------------------------------------------------------------------CGCAGCAG-T..................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................ATCTGCCCGAAACC---------------CCTTGCC........................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
CGGTG---------------------------------------------------------------------------------------------------------------------------------CATAAACAAATGAAA------TATTTAAATAGAC---ATAATCATTC---------------------------GTTGACGCTGACTGCGACGTCGACTGCACA--------------------G-TGACACCTTGCAATCTGCCCGAAACC---------------CCTTGCCGTTTG----------T--GTGTTT-------------GTT----TTCCAACT---------------------------------GTTTCATTTCTC-------------------------------------------------------------------------------------------CGCAGCAG-TT--GCATCTCGTTTGGAAT------TTGAATT--------CAA---------------------------------------------------------------------ATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTC-------------------------------------------------------------------------------------------CGCAGCAG-TT--GCATCTCGTTTG...................................................................................................2912.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TT--GCATCTCGTTTGGAAT------TTGAATT--------C.........................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GCATCTCGTTTGGAAT------TTGAATT--------..........................................................................2411.001000001
.................................................................................................................................................................................ATTC---------------------------GTTGACGCTGACTGCG............................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................ATTC---------------------------GTTGACGCTGACTGCGACGTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................C---ATAATCATTC---------------------------GTTGACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
AAGTTGAAGTACACACAGAG--TTATGTTTTATTTTTAATTTTCCAAAAAAAAAAAGGAAAGA----AAACGA--------TATAAGA--ACAACTACAATAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------AAGAAGACCAACATATTGCCTCTTGTT-GTAGACATTGCTCTCAC--------CCCT--------CTCTCTCTCT------------------------------------------------------------------------------------------------------CT-----------CTCTCT--C------TCTCCTTC--------ACTCACTCTGTCTCTCTCTATTTTGGTGCAAAGAATTCATATAAGAGGCAG-ATAATTTTACCAATTTCCAA------C---------------AGTCTTTGCTTGCCTCTCTTA-GTGTTTAG--------------------TTCGAT---------------CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................AAAAAAAAAGGAAAGA----AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
...........................................................................................................................................................................................................................................................................................................CTCTCTCT------------------------------------------------------------------------------------------------------CT-----------CTCTCT--C------TCTC...................................................................................................................................................................................21200.05101000
droVir3
CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------CTCTCTCTGTCTC-------------------TTTGTCTCACTCTCTAG------AACTTACT---------------------------------CTCTCTCCCTC--TCTCT----CTCT--C-----T--CTC--TC--TCTCTC--------TCTCTCTTTCTC----------------------------------------------------TCTCTATG------CTTGTCT--------CTG----------------TCGACTGTTTGGACAAGTTATCATGAAGATGTTTCGACTCATTGAAACAAAGGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
A------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACTACTAACTTTTCA---------------------------GTA-----------------------------------------------TCCGTTGCCTATCAGAAGA--------------------TTCTCTCTCTCTCTC-----------T--CTCTCTGTCTCTCT----CTCT----CGCTCTCT---------------------------------CTCTCTCTCCCTCTCTCT----CTCT--C-----T--CTC--TCTCTCTCTC--------TCTCTATCTATCTCTCTCTC----------------------TCGTAATGCACAGCTATTCCCAATTTTCA------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAGCA-GCAGCCTTTCAAACAA------------------------ACAA---------CAATCGCC---TGC--------TGCTGTTG-CT-----------------------GCTGTTGCT-----GCTGCTGTTGCAGGAACAGGCGAATTCATCAAAGTGACCCTCAACTTCGTGCCCCAACCCTGCCTCCCCCAAAACGAATTCA-----------------------------------------------ACTT--GCCCCCCAACTGT--------------------CTCTCGCTGTCT---C----------T--GTCTCTGTCTC-------TGTC----T-----CT---------------------------------GTCTCTCTCTCT------------C---------T--CTC--TCTCTCTCTC--------TCTCTATTCAACTCTGTCTG----------------------T----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:02 PM