ID:

dsi_26442

 Coordinate:

2r:21299127-21299404 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.1 -12.6

Flybase annnotation

five_prime_UTR [2r_21299209_21299960_+]; exon [2r_21299209_21299960_+]

No Repeatable elements found

Sense Strand Reads

------------------------------------------------------------------------------------------------------------------------------------######################################################################################################################################################################################################################################################
AATAGCTGAAAAAAAACGTTAAGGAAACAATAGAAGCCTATTCTTACCAGGTCTGTATTTACAGTTACCTAGCTAAGTGACTAAAATGCAAGTGGCATCTCCTAGCAGTCATACGTAGCTGCGCATTCCGTCATTAGCTTTTTTACTTTTGACGACGACGGATGTTTCCTTTCGTGTCCGCGCATCCTTAGTTCACTAAATTCTGCCGCATGCTTTTCTCACTACCACCGAAGCTCACACATCGCATACCCATACACAGGCACGGAAAAAAGTTAAAATCGGAAAGGTTCCTGTGAAAAGCAGCAGTTAAACTCATCGGAAGTTGTAGTTTTTCCAGGAAGCAACGGTGCTTTTTTCCCTTAGTTTCCGAAACATTTT
*******************************************************************************************************.....((...(((............(((((..((........))..))))))))...))************************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................ACTTTTGACGACGACGGA........................................................................................................................................................................................................................ 18 0 1 16.00 16 0 16 0 0 0 0 0 0 0 0
..............................................................................................................................................TTACTTTTGACGACGACGGAT....................................................................................................................................................................................................................... 21 0 1 9.00 9 8 0 0 1 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGATGTTTCC................................................................................................................................................................................................................. 25 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0
...............................................................................................................................................TACTTTTGACGACGACGGATG...................................................................................................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CTTTTGACGACGACGGATGTT.................................................................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGATGT..................................................................................................................................................................................................................... 21 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
........................................................................................................................................................CGACGACGGATGTTTCCT................................................................................................................................................................................................................ 18 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGG........................................................................................................................................................................................................................ 18 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGAT....................................................................................................................................................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGATGTTTC.................................................................................................................................................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................AGCAGTCATACGTAGCTG................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................TTTTACTTTTGACGACGACGG......................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTGACGACGACGGATGTTTCCTT............................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGATG...................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................CGACGACGGATGTTTCCTT............................................................................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAAGTTAAAATCGGAAAGGTT......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTTCCTTTCGTGTCCGCGCAT................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTTGACGACGACGGATGTT.................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACGACGACGGATGTTTCCTTTT............................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CAGGCACGGAAAAAAGTTAA...................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCTCACTACCACCGAAGCTCA............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACTTTTGACGACGACGGA........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AAAGCAGCAGTTAAACTCAT.............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTGACGACGACGGATGTTTA.................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................CGTAGCTGCGCATTCCGTCA..................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACTTTTGACGACGACGGATT...................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACGACGACGGATGTTTCCTTT.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTTGACGACGACGGATGTTTCCTT............................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TTGACGACGACGGATGTTTT.................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTTGACGACGACGGATGTTA................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGACGACGACGGATGTTTCCT................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAAATTCTGCCGCATGCTTTT................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACTTTTGACGACGACGGTTT...................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTTGACGACGACGGATGTTT................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AAAAAGTTAAAATCGGAAAGG........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACTTTTGACGACGACGGATGTTT................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTACTTTTGACGACGACGG......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTTGACGACGACGGATGTTT................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTGACGACGACGGATGTTTCC................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGACGACGACGGATGTTTTT................................................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................CATCAGAAGTTGTAGTTTTTT............................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTATTCCAGGAAGCAACGCTG............................. 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TCGGAAGTTCAAGTCTTTCC........................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................GGTTCCTGTGAGATGCA............................................................................ 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AATAGCAGCGGTGAAACTCA............................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
...................TAAGGAAATAATAGA........................................................................................................................................................................................................................................................................................................................................................ 15 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
........................................................................................CAATTGGCATCTCTTAGCAA.............................................................................................................................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GGAAGTTGGAGTATGTCCAG......................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0
..................CTAAGGAAATAATAGAAG...................................................................................................................................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................TGTAGTTTTTCCCGG........................................ 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0
.........................AATAATAGAAGCCTA.................................................................................................................................................................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATAGCAGCGGTGAAACTCA............................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................CTACGGAAAAAAGTTAAA..................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................TCATACGTAGCAGAGC.............................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................GCATCCGTAGCTCACT..................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTATCGACTTTTTTTTGCAATTCCTTTGTTATCTTCGGATAAGAATGGTCCAGACATAAATGTCAATGGATCGATTCACTGATTTTACGTTCACCGTAGAGGATCGTCAGTATGCATCGACGCGTAAGGCAGTAATCGAAAAAATGAAAACTGCTGCTGCCTACAAAGGAAAGCACAGGCGCGTAGGAATCAAGTGATTTAAGACGGCGTACGAAAAGAGTGATGGTGGCTTCGAGTGTGTAGCGTATGGGTATGTGTCCGTGCCTTTTTTCAATTTTAGCCTTTCCAAGGACACTTTTCGTCGTCAATTTGAGTAGCCTTCAACATCAAAAAGGTCCTTCGTTGCCACGAAAAAAGGGAATCAAAGGCTTTGTAAAA
************************************************************************************************************************************************************************************************************************.....((...(((............(((((..((........))..))))))))...))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
.....................................................................................................................................................ACTGCTGCTGCCTACAAAGGA................................................................................................................................................................................................................ 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GGCGCGTAGGAATCAAGTGAT.................................................................................................................................................................................... 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTAGGAATCAAGTGATT................................................................................................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGCGCGTAGGAATCAAGT....................................................................................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTGCTGCTGCCTACAAAGGAA............................................................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GATTTAAGACGGCGTACGAAA.................................................................................................................................................................. 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGCTGCTGCCTACAAAGGAAA.............................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AACTGCTGCTGCCTACAAAG.................................................................................................................................................................................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATCGACGCGTAAGGCAGTAAT.................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ACTGCTGCTGCCTACAAAGGG................................................................................................................................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ACAGGCGCGTAGGAATCAAG........................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGCGCGTAGGAATCAAG........................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGGCTTCGAGTGTGTAGT...................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GCTGCTGCCTACAAAGGAAA.............................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AGGCGCGTAGGGATCAAGTGG..................................................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCATCGACGCGTAAGGCAGTA.................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTAGACGGCGTACGAAAAGA............................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TACGAAAAGAGTGATGGTGGC.................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GAAAAAAGGGAATCAAAGGCT........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGCGCGTAGGAATCAAGTG...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CACAGGCGCGTAGGAATCAA......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTAAGGCAGTAATCGAAAAAA.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAGCACAGGCGCGTAGGAATC........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AACAGGCGCGTAGGAATCAA......................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGCTGCTGCCTACAAAGGAA............................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTAGGCGCGTAGGAATCAAGT....................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ACAGGCGCGTAGGAATCAA......................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAGGCGCGTAGGAATCAAG........................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GGCAGTATGCATCGACGCGTA............................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTAAGACGGCGTACGAAAA................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTTCGACGCGTAAGGCAGTAA................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AGGCGCGTAGGAATCAAGT....................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGCGCGTAGGGATCAAGTGAT.................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTAGGAATCAAGTGGTT................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TATGGTGGCTTCGAGTGTGTA........................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CCCAGGCGCGTAGGAATCAAG........................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TCGACGCGTAAGGCAGTAATC................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GTCAATTTGAGTAGCCTT......................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CGTCGTCAATTTGAGTAGTCT.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AATGAAAACTGCTGCTGCCTAC...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTGATCGCGGCTTCGAGGGTG.......................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AAACAGGCGCGTAGGAATCAAGT....................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCTGCTGCTGCCTACAAAGGA................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CGCGTAGGAATCAAGTGATTTAAGA.............................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GAGTGTGTAGTGTATGGGTAT............................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGGATAAGAATGGTCCAGAC................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAGCACAGGCGCGTAGGAAT............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACCGTAGAGAATCGTCAGTAT......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGCTGCTGCCTACAAAGGGAA.............................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGCACAGGCGCGTAGGAATC........................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GCTGCTGCCTACAAAGGCAAG............................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAGAGTGATGGTGGCTTC................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGCCTACAAAGGAAAGCACAGGC...................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................ATCGACGCGTAAGGCAGTAA................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GCGTAGGAATCAAGTGATTTA................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TAAAAAAACTGCTGCTGCCTACAAA................................................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTGTGTAGTGTATGGGTATGT.......................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GGCGCGTAGGAGTCAAGTGAT.................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAAGAGTGGTGGTGGCTTCG................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GAAAGCACAGGCGCGTAGGAA............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGAAAACTGCTGCTGCCTAC...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CACAGGCGCGTAGGAATCAAG........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GAAAACTGCTGCTGCCTACA..................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTTTAAGACGGCGTACGAAAA................................................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTAGTGATGGTGGCTTCGAGT............................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TCTGCACAGGCGCGTAGGAA............................................................................................................................................................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGGAAGAGTGATGGTGGCTTC................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTAGCCTTTGCAAGGA...................................................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTAAGACGGCGTACGGGTAG................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................CACTGATCTTACATTTACCGT......................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
.................CAATTCCTTTGTTATTCTC...................................................................................................................................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
............TTTTGTCATTCCTTTGTTAT.......................................................................................................................................................................................................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................AAGGAAAACTGCTGC............................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................AATGGTGCAGACATA................................................................................................................................................................................................................................................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TCAGTATGCAGCGATGAGT............................................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................TTTAAGACGGCGTACGGGTA................................................................................................................................................................. 20 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GAGGCCTATGGCAGTAAT.................................................................................................................................................................................................................................................. 18 3 18 0.11 2 0 0 0 0 0 2 0 0 0 0 0 0
..........................TGTTGTCTTCGGACAAGAAG............................................................................................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................AAAAAAAAGGAATCGAAGGCTT....... 22 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................CTTCGAAAAGGACCTTCGT................................... 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................................................................................................AAAAAGTGATAGTGGCTT.................................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................TGAAAACTGCTGCTGGA......................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................CCTTTAACATATAAAAGGTCC........................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1
..................CATTCCTTTGTTATC......................................................................................................................................................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................TCGGTATGCATCGATGGGT............................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTAAGACGGCGTACGGGTAG................................................................................................................................................................ 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GACGGCGTTCGAAAA................................................................................................................................................................. 15 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................GCTTCGAGTGTGCAGA...................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................AAGTGAAAACTGCTGCC............................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGATGGTGGCGTCG................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................AAATGGAAAACTGCTGC............................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:21299077-21299454 + dsi_26442 AATAGCTGAAAAAAAACGTT--AA--GGAAACA--A---TAGAAG----CCTAT----------TCTTACCA--------------------------------------------------------------------------GGTCT--GTATTTACAGTTACCTAGCTA------AGTGAC---------------------------------TAAAATGCA--AGTGGCATCTCC------TAGCAGTCATAC-GT-AGCTGCGCATTCCGTCATTAGCTTTTTTACTTTTGACGACGACGGATGTTTCC-TT-----------TCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCCATACACAGG-CACGG----AA---AAAAGTTAA-AATCGGA-AAGG-TTCCTGTGAAA---AGCAGCAGTTA-AACTCA----------------TCGGAAGTTGTAG------TTTTTCC---------------------------AGGAAGCAACGGTGCTTTTTTC-CCT-TAGTTT--CCGA-AACATTTT
droSec2 scaffold_23:693079-693455 + AATAGCTGAAA-AAAACGTT--AG--GGAAACA--A---TAGAAG----CCTAT----------TCTTACTA--------------------------------------------------------------------------GGTCT--GTATTTACAGTTACCCAGCTA------AGTGAC---------------------------------TAAAATGCA--AGTGGCATCACT------TAGCAGTCATAC-GT-AACTGCGCATTCCGTCAATAGCTTTTTTACTTTTGACGACGACGGATGTTTCC-TT-----------TCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CACATACCCATACACAGG-CACGA----AA---AAAAGTTAA-AATCGGA-AAGG-TTCCTGTGAAA---AGCAGCAGTTA-AACTCA----------------TCAGAAGTTGTAG------TTTTTCC---------------------------AGGAAGCAACGGTGCTTTTTTC-CCT-TAGTTT--CCGA-AACATTTT
dm3 chr2R:20836038-20836420 + AATAGCTGAAA-AAAACGTT--AG--GAAAACA--A---TAGAAG----CCTAT----------TCTTACAA--------------------------------------------------------------------------GGTCTT-GAAATTACAGTTACCCAGTTA------AGTGGC---------------------------------TAAACTGCA--AGTGGCATCTCC------TAGCAGTCATAC-GT-AACTGCGCATCCCGTCATTAGCTTTTTTACTTTCGACGGCGACGGACGTTTCT-TT-------TCATCCGTGTCCGCGC---------ATC----CTTAGTTGA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCTATACACAGG-CAGAG----AA---AAAAAATAA-AATCGGA-AAGG-TTCCTGTGAAA---AGCAGCAGTTA-AACACA----------------TCAGAAGTTGTAG------TTTTTCC-------------------------C-AGGACGTAACGGTGCTTTTTTC-CCT-TAGTTT--CCGA-AGCATTTA
droEre2 scaffold_4845:22208883-22209268 + AATACTTGGAAAAAAACGTT--AG--GAAAACA--A---TAGAAG----TCCAA----------TCTTACTA--------------------------------------------------------------------------TGTCTT-GTAATTTCAGTTATCCAGCCA------ACTGGC---------------------------------GTAACTGCA--AGTGGCACCTCC------AAGCAATCATAC-GT-AACTGCGCATTCCGCCATTAGCTTTTTTACTTTCAACGGCGACGGATGTTTCT-TT-------TCATTCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCGGCATGCTTCTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCCATACACAGC-CACGG----AA---AAAAGTTAA-AGTCAGAGGAGG-TTCCTGTGAAA---AGCGGCACTTT-AACACA----------------TCAGGAGTTGTAG------TTCTTTC-------------------------C-AGGAAGCAACTGTGCTTTTTTCCCCT-TAGTTT--CCTA-AACATTTT
droYak3 2R:20799727-20800110 + AACAGGTGGAA-AAAACGTT--AG--GAAAACA--G---TAGAAG----CCCAT----------TCTTACGA--------------------------------------------------------------------------AGTCTT-TTAATTAAAATCCTCCATCTA------ACTGAC---------------------------------GTTACTGCA--AGTGGCACCTCC------TTGCTATAATAC-GT-AACTGCGCATTCCGCCATTAGCTTTTCTACTTTCGACGGCGACGGATGTTTCT-TT-------TCATTCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCAGTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCCATACACAGC-CACGG----AA---AAAAGTTAA-AGTCCAA-AAGG-TTCCTGTGAAA---AGCGGCAGTTT-AACACA----------------TCAGGAATTGTAG------TTTTTTC-------------------------C-AAGAAGGAACTGTGCTTTTTTCACCT-TAGTTT--CCGA-TACATTTT
droEug1 scf7180000409464:1486214-1486604 - AGT----GGAA-AATACTTG--AA--AAAAACA--A-------CGTTTTTTTTTATTTTATTATATTTCTTAGGATT--TTGAGTTT------------------------AGTAACCCAAGTTTTCCGAAC-----------------------------------------G------TATAAC---------------------------------GTAACGGTA--AGTGGCAAATTCACATCCAGAAAATCCTAC-GT-AGCTGCGCATTCCGTCATTAGTTTTTAT-CTTTCTGCAAGAGCGGACGTTTCTCTT-------CAGTTCGTGTCCGCGC---------AA----------------------------------------------------AAAGATTTAGCCGCATGCTGTTCTTGCTACCACCA-------AGCTT---------------------------------------------------------------GTACATAGAT-TGCATACCCATGCACAAC-CACCGCGA-AA---AAAATTTAA-AGTTCGA-GAAA-TTTAAGTGAAA---AACGCTAGTTT-TAGAAA------------------AG--------G------ATTTTCT-------------------------G-CGGTAGCAAGTGTGCTTTTTTTCTTA-TAATTT--CCAATAACATTTT
droBia1 scf7180000301754:5805634-5806014 + TA--GCGGGAA-TGTGCCTTTAGG--AATGG----CTG-CCAAGT----CCTAT----------T-TTACCA--------------------------------------------------------------------------GCACTTCGTA--------TACCCA-----------GTAAT---------------------------------GTAGCGGCA--AGTGGCACATCC------TGGCAATCCTAC-GA-AACTGCGCATTCCGTCATTAGCTTTCTTCCCTTCGGCGGCGACGGACGTTCTCCTTCCGTTTTCCGTTCGTGTCCGCGC---------ATC----CTTGGTTCA--------------------------------------CTGAATTCTGCCGCACGCTTTTCTCGCAACCACCA-------A------------------------------------------------------------------AGATTATACTT-CGCATACCCATACACAGC-CGCGGAAAG---GAAAAAGTTAA-AACCCGA----G-TTGCAGTGAAG---AAAAACAGTTT-CCAACA----------------ACGGGACTTGCAG------TCTCTCC-------------------------C-GGAAGACCGCTGAGCTTCTTTCCTTA-TAATTT--GCGAAAACATTTT
droTak1 scf7180000415805:383677-384035 - G------GGAA-AATCCCTTTTAA--AATGT----CTG-CCAAGG----ACTAC----------TC-TACCAGGACT--CGGAGT-T------------------------GGCCATCCAAGTTTTTCAAAC-----------------------------------------C------CGCAAC---------------------------------GTAGCGGCA--A--------TCC------TCGCCAGCCTAC-GT-AACTGCGCATTCCGTCATTAGCTTTTTTCCCTTCGACGGCGACGGACGCTTTC-C-----------TTCGTGTCCGCGC---------ATC----CTTGCTTCA--------------------------------------CTGAATTCTGCCGCACGCTTTTCTCGCTACCACCG-------A------------------------------------------------------------------AGTTTATACAT-CGCATACCCATACACAGG-CGCGGAGAA---GAAAAAGTTAA-AACCCGA-CACA-TTCAAGTGAAA---A-TAACAGTTT-TCCACA----------------ACGGGACTTG-------------------------------------------------CACCTGTGCTTTTT-CCTTA-TAATTT--GCAA-GACATTTT
droEle1 scf7180000491107:347751-348134 - TAC--CGGGAA-AATCTATTTTAA--AACCGGA--A---TCAACG----CC-AT----------TGTTCCTG-A----------------------------------------------------------ACTTA------------------------AGCTATTCATGTATTATTCAA-AAA---------------------------------GTAACGGTC--AGTGGCATATCCTTAACGCGGTAGTCCTTG-AT-A------CCTGTCGTCATTAGCTTTTTCCCCTTCGACGGCGACGGACGTTTTCCTT-------CCGTTGGTGTCCGCGC---------ATC----TTTTGTTCA--------------------------------------CTTAATCCTGTCGCACGCTTTTCACGCTACCACCG-------A------------------------------------------------------------------AGTTTACGCAT-CGCATACCCATACACAGC-TACAAA-AA---TAAAAAGTCAA-AGCGCGA-TAAA-TTCAAGTGAAA---AGCGACATTTTTAGGCCA----------------ACACAACTTGCAG------TTTTTC----------------------------CAGAATCAATTGTGCTTTTTTCCTTA-TAATTT--GCGAGAACAGTTT
droRho1 scf7180000762736:26683-27060 + AAT--GTGAAA-TTATTCTT-TAG--AACGA----C---TTCAAC----GCCAT----------TTTTCCGC-AT---------------------------------------------------------ATTTA------------------------AGTTGTTCATGTTCATTTCAA-AAA---------------------------------GTAACGGGA--GAAGGCACATCC------TCGTAGTCCTTC-GT-AACTG------CCGTCATTAGCTTTTTTCCCTTCGACAGCGACGGTCCTTTTCCTT-------CCGTTCGGGTCCGCGC---------ATC----TTTTGTTCA--------------------------------------CTTAACTCTGTCGCACGCTTTTCTCGCTATTAGCA-------A------------------------------------------------------------------AGTTAACGCAT-CGCATACCCATACACAGC-TTCGGAATA---TAAAAAGTTAA-AACTCGA-TAAA-TTCAAGTACAA---ACGGACATTTGAATGCCA----------------ACGGAACTTGCAG------TTTTTTC---------------------------CAAAAGCAATTGTGCTTTTTTC-TTA-TAATTT--GCAAAAACATTTT
droFic1 scf7180000453858:660106-660480 - TTTACTGGGAA-AAATCAT------------------------CG----CCTAT----------A-TTACGAGGA---------------------------------------------------------ATTTAAATTTTCTAAGTCT--GCTC-----------------------TTTGAC----------------------------------AGATGGCA--AAAAGCATGAAC------TCCTAATCCTGC-GT-AACTGCGCATCCCGTCATTAGCTTTTCTTCTTTCGGCGGCGACGGACGTATCC-TT-------CTTTCTGTGTCCGCGC---------ATCAAACATCCGTTAA--------------------------------------CTTGATACTGCCACACGCTTTTCCTGCCACCACCG-------A------------------------------------------------------------------AGTTTATATAC-CGCATACCCATACACATC-GTCAAAAAA---TGAAAAACTAA-ATCTCGA-AAAA-TTCTAGTGAAA---AAGAGCCATTT-GACTAC----------------ACACAGCTTGCGG------TTATTCC-------------------------C-CAAAGGCAGTTGTGCTTCTTTCCTTA-TAATTT--GCGCAAGCGTTTT
droKik1 scf7180000302366:977335-977725 + AC---GTGGAA-AACTTGTT--GC--GAAAATA--T---AAACTG----CCTCTATCTGAATAATTTTACAA--------------------------------------------------------------------------GGACT--GCCT-------------------------------------GCAGCGACAGACAGCTTCGAATTC-GTAACGGCT--CGTG-----T--------------GCACATCCT-GGCTGCGCATTCCGTCATTAGCTTTTTTTCTTTCGACGGCGGCGGACGCTTTCCTT-------TCGCGCCGGTCCGCGC---------ATC----ATTAGTTG-----------------------------------------AAATTCTGCCGCACGCTTTTCTCGCAACCACCG-------AAA----------------------------------------------------------------AGTTTATACAT-CACATACCAATACATAAA-AATA----------------TAA-AACAAAA-GGAATAAAAAGTGAAA---CGTAGCATTTC-TACGTAAGAGCACCGGCAGCTAACGGGACTTGCCG------TTCTTCT-------------------------TCGAAAAGCCCCTCTGCTTTTTTCTTTA-TAATTTCGCCGAAAACATTTT
droAna3 scaffold_13266:12126121-12126480 + AATT----------------TTACGCGG----A--G---TAGAG----------------------CTCTGAGGTCC--TTGAGGTAATCCGTAAGTAACTTTCCAGGAAGAAGCAC--CCAAAA------------------------------------------------------------------------------------TTCAAAATC-CTAACAG--TGCTCC-----G--------------GCGCAG-CT-AACAGCACATTCCGCCATTAGCTTTTTTTCCTTTGGCGGGGGCGGACGCGCTT-TT--------------TGTCCGTGCATTCCGCAGAAC----TT---------------------------------------------------TTTCGCACACGCTTTCCTCGCCATTGCCACA-CAAGA------------------------------------------------------------------AGTTTC--CAC-CGCATACCAACACACTAC-CAGGA----AAATCCAGCGTCTA-AGCCGC---AGA-ATGCTGTGAAA---ATC-----TTA-AAGCTA----------------ACGGGATCTG--G------TTCTTCT-------------------------G-AAAAGACTGCAGTGCTTTTTATCGTTTTATTTT--CTGAG--AACTCT
droBip1 scf7180000396547:352170-352538 - ATAT---------TATATTTTCAAGCGAAGATGTCCTAA-GAG----T---------------------------CCCCGTAAGGGAATACGTAAGGCACCTTCCAGGAAGGACCAC--CAAT--------------------------------------------------------------------------------------TTCAAAATC-CTAACGC--CACACC-----A--------------CCGCAG-CT-AACGGCACATTCCGCCATTAGCTTTTTTTCCTTTGGCGGAGGCGGACGTGTTT--------------TTGTGTCCGCGCATTCCGCAGAAC----T---------------------------------------------------TTTTCGCACACGCTTTCCTCGCAATCACCACCTAAAGA------------------------------------------------------------------AGTTTC--CAC-CACATACCAACACACTAC-CAGGA----AAATTCGGCGTCTA-AACCGC---AGA-ATGCAGTGAAA---ATC-----TTA-AAGCTA----------------TCGGGATCTG--G------TTCTTCT-------------------------C-CAAAAACTGCAGTGCTTTTTATCGTTTTGTTTT--TCTA-AGAACTCT
dp5 3:1939220-1939642 + AAAA---------ATAGTTTTCAA--AAT-----TCTGG-CAG----T---------------------------C--------------ATTAAGTTGCAATCATAGAAAGTCCAT--TAATTTTTTAAAC-----------------------------------------T------TACAACGGAAACCTACTGT-------------------G---------TACTCT-----G--------------CTGCCA-CTGCGCTGCGCATTCCTTCATTAGCTTTTTTT-CTTCGGCGGCAACGGACGCTCCT-TT-------TC-TCTGTTGCCGCAC---------AGC----ATT---------------------------------------------------CGTTCGCACGCTTTTCTCGCTACCACCA-------CAAATATA----------CATACAATACATAACCGTTTATACATATAATAGAAATAAGAAGAGGAGAAGATAACTAAG-AACATACCAATACATAAATCATAT----AG---AAAAGTTTAATAAGAAA-GAAT-TTCGAGTGAAA---AAGTACATATA-TACTCA----------------GTAGAAACCGCAGTGGTTTTTTCTCT-------------------------T-TGGAAGT-ATTCTGCTTTTTTAAATA-TAATTT-GCCGAGAATATTTA
droPer2 scaffold_2:2112185-2112613 + TC------AAA-AATAATTTTCAA--AAT-----TCTGG-CAG----T---------------------------C--------------ATTAAGTTGCAATCATAGAAAGTCCAT--AAATTTTTTAAAC-----------------------------------------T------TACAACGGAAACCTACTGT-------------------G---------TACTCT-----G--------------CTGCCA-CTGCGCTGCGCATTCCTTCATTAGCTTTTTTT-CTTCGGCGGCAACGGACGCTCCT-TT-------TC-TCTGTTGCCGCAC---------AGC----ATT---------------------------------------------------CGTTCGCACGCTTTTCTCGCTACCACCA-------CAAATATA----------CATACAATACATAACCGTTTATACATATAATAGAAATAAGAAGAGGAGAAGATAACTAAG-CACATACCAATACATAAATCATAT----AG---AAAAGTTTAATAAGAAA-GAAT-TTCGAGTGAAA---AAGTACATATGTATA--T---AC-TCA-------GTAGAAACCGCAGTGGTTTTTTCTCT-------------------------T-TGGAAGT-ATTCTGCTTTTTTAAATA-TAATTT-GCCGAGAATATTTA
droWil2 scf2_1100000004510:1419206-1419387 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCATTCCTTTAGTAGCTTTTTTCGCTTCGACGGCAACGGACACGCTC-T---------------TGCTTGCAC---------ATT----CTTGCTTAATTTCGTCTTTTTTGCTCTCTCTCTCTCTCGCTGTCTCGCCACTTTCCGCCGCACGCCAT---------------------------------------------------------------------------------------------------------------TAACCAC-CACAA----AA---ACAGAACAG-AACAGAA-AGGC-AGGAAAGGAAA---AGCAAC---------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:17227490-17227753 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GGCTGCGCATTCCGTTAGTTGCTTTTTTCACTTCGGCGGCGGCAGTCGTTTCC-TC-------TC-------GCCGCGC---------AGC----GAACGCC-------------------------------------------ATTTTAGCCGCACGCAT-TATTGCTACCACCA-------AAA------AATAAAATAAATCTTA------------------------------------------GGCCGACACATGCACATACCAATACATCACTTATAT----AG---AC-AGTGTAAAAT-------G-TGAAAAAAGAAAATC------------------------------------------------------------CCTTCATCTCTTGCAGCCTAAAAGTG-GGCAAACTTTTTCGCTTTTTAAATTA-TACGTT-GCCGGGCATAATTC
droMoj3 scaffold_6496:10778097-10778205 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GGCTGCGCATTCCGTTAGTTGCTTTTTTCACTTCAGCGGCGGCAGTCGCTCTC-TT-------TC-------GCCGCGC---------AGC----AAACGCC-------------------------------------------ATTTCAGCCGCACAT-ATTATTGCTACCACCA-------A------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:16746312-16746577 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GGTTGCGCATTCCGTTAGTCGCTTTTTTCACTTCAGCGGCGGCGGTCGCTCTCCTT-------T---TTCTCGCCGCGC---------ATC----ATTCGTTA-------------------------------------------TTATAGCCGCACACTT-TATTGCTACCACCA-------AAAATAAAAAATAAAATAAATCTAA------------------------------------------GGCCGACACATGCACATACCAATAGATCATTCATAT----AG---AC-AGTGTAAATT-------G-TGAAAAA--------------------------------------------------------------------GCTTTAACGGTTGCAGCCTAAAAGT--AGGCAACACTTCTGCTTTTTAACTTA-TACGTT-GCCGGACCTAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATAGCTGAAAAAAAACGTT--AA--GGAAACA--A---TAGAAG----CCTAT----------TCTTACCA--------------------------------------------------------------------------GGTCT--GTATTTACAGTTACCTAGCTA------AGTGAC---------------------------------TAAAATGCA--AGTGGCATCTCC------TAGCAGTCATAC-GT-AGCTGCGCATTCCGTCATTAGCTTTTTTACTTTTGACGACGACGGATGTTTCC-TT-----------TCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCCATACACAGG-CACGG----AA---AAAAGTTAA-AATCGGA-AAGG-TTCCTGTGAAA---AGCAGCAGTTA-AACTCA----------------TCGGAAGTTGTAG------TTTTTCC---------------------------AGGAAGCAACGGTGCTTTTTTC-CCT-TAGTTT--CCGA-AACATTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................18116.0016160000000000000000
..................................................................................................................................................................................................................................................................................................TTACTTTTGACGACGACGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2119.00901000000000008000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATGTTTCC-..............................................................................................................................................................................................................................................................................................................................................................................................................................2516.00660000000000000000
...................................................................................................................................................................................................................................................................................................TACTTTTGACGACGACGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2115.00500000000000005000
.....................................................................................................................................................................................................................................................................................................CTTTTGACGACGACGGATGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00400000000000004000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00430000000000001000
............................................................................................................................................................................................................................................................................................................CGACGACGGATGTTTCC-T.............................................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00330000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATGTTTC................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000000000000000
.........................................................................................................................................................................................................................................................AGCAGTCATAC-GT-AGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
................................................................................................................................................................................................................................................................................................TTTTACTTTTGACGACGACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
........................................................................................................................................................................................................................................................................................................TTGACGACGACGGATGTTTCC-TT-----------.................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
............................................................................................................................................................................................................................................................................................................CGACGACGGATGTTTCC-TT-----------.................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAA-AATCGGA-AAGG-TT...................................................................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................TTTCC-TT-----------TCGTGTCCGCGC---------AT..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................TTTTGACGACGACGGATGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...........................................................................................................................................................................................................................................................................................................ACGACGACGGATGTTTCC-TT-----------TT...............................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG-CACGG----AA---AAAAGTTAA-..................................................................................................................................................................2011.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCACTACCACCG-------A------------------------------------------------------------------AGCTCA...................................................................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................TACTTTTGACGACGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AGCAGCAGTTA-AACTCA----------------T....................................................................................................2011.00100000000000001000
........................................................................................................................................................................................................................................................................................................TTGACGACGACGGATGTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................C-GT-AGCTGCGCATTCCGTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................TACTTTTGACGACGACGGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................ACGACGACGGATGTTTCC-TT-----------T................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................TTTTGACGACGACGGATGTTTCC-TT-----------.................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
........................................................................................................................................................................................................................................................................................................TTGACGACGACGGATGTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
......................................................................................................................................................................................................................................................................................................TTTTGACGACGACGGATGTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................TGACGACGACGGATGTTTCC-T.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTCTGCCGCATGCTTTT................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................TTTGACGACGACGGATGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AAAAGTTAA-AATCGGA-AAGG-.....................................................................................................................................................2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
.................................................................................................................................................................................................................................................................................................TTTACTTTTGACGACGACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
......................................................................................................................................................................................................................................................................................................TTTTGACGACGACGGATGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................TTGACGACGACGGATGTTTCC-..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................TGACGACGACGGATGTTTTT-..............................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000000000001000
droSec2
AATAGCTGAAA-AAAACGTT--AG--GGAAACA--A---TAGAAG----CCTAT----------TCTTACTA--------------------------------------------------------------------------GGTCT--GTATTTACAGTTACCCAGCTA------AGTGAC---------------------------------TAAAATGCA--AGTGGCATCACT------TAGCAGTCATAC-GT-AACTGCGCATTCCGTCAATAGCTTTTTTACTTTTGACGACGACGGATGTTTCC-TT-----------TCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CACATACCCATACACAGG-CACGA----AA---AAAAGTTAA-AATCGGA-AAGG-TTCCTGTGAAA---AGCAGCAGTTA-AACTCA----------------TCAGAAGTTGTAG------TTTTTCC---------------------------AGGAAGCAACGGTGCTTTTTTC-CCT-TAGTTT--CCGA-AACATTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------TTTTTCC---------------------------AGGAAGCAACGGTG..................................2311.0010001
................................................................................................................................................................................................................................................................ATAC-GT-AACTGCGCATTCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
....................................................................................................................................................................................................................................................................................................ACTTTTGACGACGACGGATGTTTCC-TT-----------.................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
dm3
AATAGCTGAAA-AAAACGTT--AG--GAAAACA--A---TAGAAG----CCTAT----------TCTTACAA--------------------------------------------------------------------------GGTCTT-GAAATTACAGTTACCCAGTTA------AGTGGC---------------------------------TAAACTGCA--AGTGGCATCTCC------TAGCAGTCATAC-GT-AACTGCGCATCCCGTCATTAGCTTTTTTACTTTCGACGGCGACGGACGTTTCT-TT-------TCATCCGTGTCCGCGC---------ATC----CTTAGTTGA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCTATACACAGG-CAGAG----AA---AAAAAATAA-AATCGGA-AAGG-TTCCTGTGAAA---AGCAGCAGTTA-AACACA----------------TCAGAAGTTGTAG------TTTTTCC-------------------------C-AGGACGTAACGGTGCTTTTTTC-CCT-TAGTTT--CCGA-AGCATTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATAA-AATCGGA-AAGG-T....................................................................................................................................................21112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000020000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010100000000000100000000000000000100000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000
............................................................................................................................................................................................................................................................................................................CGGCGACGGACGTTTCT-T.............................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................AGTCATAC-GT-AACTGCGCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GACGTTTCT-TT-------TCATCCGTGTCCG........................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACGTTTCT-TT-------TCATCCGTGTCCG........................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGACGTTTCT-T.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A------AGTGGC---------------------------------TAAACTGCA--AGTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGC..........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTCGACGGCGACGGACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTA-AACACA----------------TCAGAAGTTGTAG------T.................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TTACTTTCGACGGCGACGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................CGGCGACGGACGTTTCT-TT-------TCATCCG..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CTTTTTTACTTTCGACGGCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GACGTTTCT-TT-------TCATCCG..............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................AACTGCA--AGTGGCATCTCC------TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCG-------A------------------------------------------------------------------AGCTCACACA...............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCC-------------------------C-AGGACGTAACGG....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................TACTTTCGACGGCGACGGACGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................................................................................................................................................................................................................CGTTTCT-TT-------TCATCCGTGTCCG........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGACGTTTCT-TT-------T....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTA-AACACA----------------TCAGAAG..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------TCAGAAGTTGTAG------TTTTTC............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AGCAGCAGTTA-AACACA----------------TC...................................................................................................2111.0010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................T----------TCTTACAA--------------------------------------------------------------------------GGTCTT-GAAATTACAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCATCTCC------TAGCAGTCATAC-GT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTTTTCTCACTACCACC....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TCT-TT-------TCATCCGTGTCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ACTTTCGACGGCGACGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CTTTCGACGGCGACGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TTCCTGTGAAA---AGCAGCAGT..............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................GGCGACGGACGTTTCT-T.............................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA---AGCAGCAGTTA-AA.........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTTCGACGGCGACGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................ATTAGCTTTTTTACTTTCGACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGG-CAGAG----AA---AAAAAAGGG-..................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
droEre2
AATACTTGGAAAAAAACGTT--AG--GAAAACA--A---TAGAAG----TCCAA----------TCTTACTA--------------------------------------------------------------------------TGTCTT-GTAATTTCAGTTATCCAGCCA------ACTGGC---------------------------------GTAACTGCA--AGTGGCACCTCC------AAGCAATCATAC-GT-AACTGCGCATTCCGCCATTAGCTTTTTTACTTTCAACGGCGACGGATGTTTCT-TT-------TCATTCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCGGCATGCTTCTCTCACTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCCATACACAGC-CACGG----AA---AAAAGTTAA-AGTCAGAGGAGG-TTCCTGTGAAA---AGCGGCACTTT-AACACA----------------TCAGGAGTTGTAG------TTCTTTC-------------------------C-AGGAAGCAACTGTGCTTTTTTCCCCT-TAGTTT--CCTA-AACATTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................ACTTTCAACGGCGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
....................................................................................................................................................................................................................................................................................................ACTTTCAACGGCGACGGATGTTTCT-TT-------.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
droYak3
AACAGGTGGAA-AAAACGTT--AG--GAAAACA--G---TAGAAG----CCCAT----------TCTTACGA--------------------------------------------------------------------------AGTCTT-TTAATTAAAATCCTCCATCTA------ACTGAC---------------------------------GTTACTGCA--AGTGGCACCTCC------TTGCTATAATAC-GT-AACTGCGCATTCCGCCATTAGCTTTTCTACTTTCGACGGCGACGGATGTTTCT-TT-------TCATTCGTGTCCGCGC---------ATC----CTTAGTTCA--------------------------------------CTAAATTCTGCCGCATGCTTTTCTCAGTACCACCG-------A------------------------------------------------------------------AGCTCACACAT-CGCATACCCATACACAGC-CACGG----AA---AAAAGTTAA-AGTCCAA-AAGG-TTCCTGTGAAA---AGCGGCAGTTT-AACACA----------------TCAGGAATTGTAG------TTTTTTC-------------------------C-AAGAAGGAACTGTGCTTTTTTCACCT-TAGTTT--CCGA-TACATTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................TTCTACTTTCGACGGCGACGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................................................................................................................................................................................................................................GACGGCGACGGATGTTTC................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000
droEug1
AGT----GGAA-AATACTTG--AA--AAAAACA--A-------CGTTTTTTTTTATTTTATTATATTTCTTAGGATT--TTGAGTTT------------------------AGTAACCCAAGTTTTCCGAAC-----------------------------------------G------TATAAC---------------------------------GTAACGGTA--AGTGGCAAATTCACATCCAGAAAATCCTAC-GT-AGCTGCGCATTCCGTCATTAGTTTTTAT-CTTTCTGCAAGAGCGGACGTTTCTCTT-------CAGTTCGTGTCCGCGC---------AA----------------------------------------------------AAAGATTTAGCCGCATGCTGTTCTTGCTACCACCA-------AGCTT---------------------------------------------------------------GTACATAGAT-TGCATACCCATGCACAAC-CACCGCGA-AA---AAAATTTAA-AGTTCGA-GAAA-TTTAAGTGAAA---AACGCTAGTTT-TAGAAA------------------AG--------G------ATTTTCT-------------------------G-CGGTAGCAAGTGTGCTTTTTTTCTTA-TAATTT--CCAATAACATTTTSizeHit CountTotal NormTotal
No Reads
droBia1
TA--GCGGGAA-TGTGCCTTTAGG--AATGG----CTG-CCAAGT----CCTAT----------T-TTACCA--------------------------------------------------------------------------GCACTTCGTA--------TACCCA-----------GTAAT---------------------------------GTAGCGGCA--AGTGGCACATCC------TGGCAATCCTAC-GA-AACTGCGCATTCCGTCATTAGCTTTCTTCCCTTCGGCGGCGACGGACGTTCTCCTTCCGTTTTCCGTTCGTGTCCGCGC---------ATC----CTTGGTTCA--------------------------------------CTGAATTCTGCCGCACGCTTTTCTCGCAACCACCA-------A------------------------------------------------------------------AGATTATACTT-CGCATACCCATACACAGC-CGCGGAAAG---GAAAAAGTTAA-AACCCGA----G-TTGCAGTGAAG---AAAAACAGTTT-CCAACA----------------ACGGGACTTGCAG------TCTCTCC-------------------------C-GGAAGACCGCTGAGCTTCTTTCCTTA-TAATTT--GCGAAAACATTTTSizeHit CountTotal NormTotal
No Reads
droTak1
G------GGAA-AATCCCTTTTAA--AATGT----CTG-CCAAGG----ACTAC----------TC-TACCAGGACT--CGGAGT-T------------------------GGCCATCCAAGTTTTTCAAAC-----------------------------------------C------CGCAAC---------------------------------GTAGCGGCA--A--------TCC------TCGCCAGCCTAC-GT-AACTGCGCATTCCGTCATTAGCTTTTTTCCCTTCGACGGCGACGGACGCTTTC-C-----------TTCGTGTCCGCGC---------ATC----CTTGCTTCA--------------------------------------CTGAATTCTGCCGCACGCTTTTCTCGCTACCACCG-------A------------------------------------------------------------------AGTTTATACAT-CGCATACCCATACACAGG-CGCGGAGAA---GAAAAAGTTAA-AACCCGA-CACA-TTCAAGTGAAA---A-TAACAGTTT-TCCACA----------------ACGGGACTTG-------------------------------------------------CACCTGTGCTTTTT-CCTTA-TAATTT--GCAA-GACATTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TAC--CGGGAA-AATCTATTTTAA--AACCGGA--A---TCAACG----CC-AT----------TGTTCCTG-A----------------------------------------------------------ACTTA------------------------AGCTATTCATGTATTATTCAA-AAA---------------------------------GTAACGGTC--AGTGGCATATCCTTAACGCGGTAGTCCTTG-AT-A------CCTGTCGTCATTAGCTTTTTCCCCTTCGACGGCGACGGACGTTTTCCTT-------CCGTTGGTGTCCGCGC---------ATC----TTTTGTTCA--------------------------------------CTTAATCCTGTCGCACGCTTTTCACGCTACCACCG-------A------------------------------------------------------------------AGTTTACGCAT-CGCATACCCATACACAGC-TACAAA-AA---TAAAAAGTCAA-AGCGCGA-TAAA-TTCAAGTGAAA---AGCGACATTTTTAGGCCA----------------ACACAACTTGCAG------TTTTTC----------------------------CAGAATCAATTGTGCTTTTTTCCTTA-TAATTT--GCGAGAACAGTTTSizeHit CountTotal NormTotal
No Reads
droRho1
AAT--GTGAAA-TTATTCTT-TAG--AACGA----C---TTCAAC----GCCAT----------TTTTCCGC-AT---------------------------------------------------------ATTTA------------------------AGTTGTTCATGTTCATTTCAA-AAA---------------------------------GTAACGGGA--GAAGGCACATCC------TCGTAGTCCTTC-GT-AACTG------CCGTCATTAGCTTTTTTCCCTTCGACAGCGACGGTCCTTTTCCTT-------CCGTTCGGGTCCGCGC---------ATC----TTTTGTTCA--------------------------------------CTTAACTCTGTCGCACGCTTTTCTCGCTATTAGCA-------A------------------------------------------------------------------AGTTAACGCAT-CGCATACCCATACACAGC-TTCGGAATA---TAAAAAGTTAA-AACTCGA-TAAA-TTCAAGTACAA---ACGGACATTTGAATGCCA----------------ACGGAACTTGCAG------TTTTTTC---------------------------CAAAAGCAATTGTGCTTTTTTC-TTA-TAATTT--GCAAAAACATTTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTACTGGGAA-AAATCAT------------------------CG----CCTAT----------A-TTACGAGGA---------------------------------------------------------ATTTAAATTTTCTAAGTCT--GCTC-----------------------TTTGAC----------------------------------AGATGGCA--AAAAGCATGAAC------TCCTAATCCTGC-GT-AACTGCGCATCCCGTCATTAGCTTTTCTTCTTTCGGCGGCGACGGACGTATCC-TT-------CTTTCTGTGTCCGCGC---------ATCAAACATCCGTTAA--------------------------------------CTTGATACTGCCACACGCTTTTCCTGCCACCACCG-------A------------------------------------------------------------------AGTTTATATAC-CGCATACCCATACACATC-GTCAAAAAA---TGAAAAACTAA-ATCTCGA-AAAA-TTCTAGTGAAA---AAGAGCCATTT-GACTAC----------------ACACAGCTTGCGG------TTATTCC-------------------------C-CAAAGGCAGTTGTGCTTCTTTCCTTA-TAATTT--GCGCAAGCGTTTTSizeHit CountTotal NormTotal
No Reads
droKik1
AC---GTGGAA-AACTTGTT--GC--GAAAATA--T---AAACTG----CCTCTATCTGAATAATTTTACAA--------------------------------------------------------------------------GGACT--GCCT-------------------------------------GCAGCGACAGACAGCTTCGAATTC-GTAACGGCT--CGTG-----T--------------GCACATCCT-GGCTGCGCATTCCGTCATTAGCTTTTTTTCTTTCGACGGCGGCGGACGCTTTCCTT-------TCGCGCCGGTCCGCGC---------ATC----ATTAGTTG-----------------------------------------AAATTCTGCCGCACGCTTTTCTCGCAACCACCG-------AAA----------------------------------------------------------------AGTTTATACAT-CACATACCAATACATAAA-AATA----------------TAA-AACAAAA-GGAATAAAAAGTGAAA---CGTAGCATTTC-TACGTAAGAGCACCGGCAGCTAACGGGACTTGCCG------TTCTTCT-------------------------TCGAAAAGCCCCTCTGCTTTTTTCTTTA-TAATTTCGCCGAAAACATTTTSizeHit CountTotal NormTotal
No Reads
droAna3
AATT----------------TTACGCGG----A--G---TAGAG----------------------CTCTGAGGTCC--TTGAGGTAATCCGTAAGTAACTTTCCAGGAAGAAGCAC--CCAAAA------------------------------------------------------------------------------------TTCAAAATC-CTAACAG--TGCTCC-----G--------------GCGCAG-CT-AACAGCACATTCCGCCATTAGCTTTTTTTCCTTTGGCGGGGGCGGACGCGCTT-TT--------------TGTCCGTGCATTCCGCAGAAC----TT---------------------------------------------------TTTCGCACACGCTTTCCTCGCCATTGCCACA-CAAGA------------------------------------------------------------------AGTTTC--CAC-CGCATACCAACACACTAC-CAGGA----AAATCCAGCGTCTA-AGCCGC---AGA-ATGCTGTGAAA---ATC-----TTA-AAGCTA----------------ACGGGATCTG--G------TTCTTCT-------------------------G-AAAAGACTGCAGTGCTTTTTATCGTTTTATTTT--CTGAG--AACTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGATCTG--G------TTCTTCT-------------------------G-................................................1820.501100000
droBip1
ATAT---------TATATTTTCAAGCGAAGATGTCCTAA-GAG----T---------------------------CCCCGTAAGGGAATACGTAAGGCACCTTCCAGGAAGGACCAC--CAAT--------------------------------------------------------------------------------------TTCAAAATC-CTAACGC--CACACC-----A--------------CCGCAG-CT-AACGGCACATTCCGCCATTAGCTTTTTTTCCTTTGGCGGAGGCGGACGTGTTT--------------TTGTGTCCGCGCATTCCGCAGAAC----T---------------------------------------------------TTTTCGCACACGCTTTCCTCGCAATCACCACCTAAAGA------------------------------------------------------------------AGTTTC--CAC-CACATACCAACACACTAC-CAGGA----AAATTCGGCGTCTA-AACCGC---AGA-ATGCAGTGAAA---ATC-----TTA-AAGCTA----------------TCGGGATCTG--G------TTCTTCT-------------------------C-CAAAAACTGCAGTGCTTTTTATCGTTTTGTTTT--TCTA-AGAACTCTSizeHit CountTotal NormTotal
No Reads
dp5
AAAA---------ATAGTTTTCAA--AAT-----TCTGG-CAG----T---------------------------C--------------ATTAAGTTGCAATCATAGAAAGTCCAT--TAATTTTTTAAAC-----------------------------------------T------TACAACGGAAACCTACTGT-------------------G---------TACTCT-----G--------------CTGCCA-CTGCGCTGCGCATTCCTTCATTAGCTTTTTTT-CTTCGGCGGCAACGGACGCTCCT-TT-------TC-TCTGTTGCCGCAC---------AGC----ATT---------------------------------------------------CGTTCGCACGCTTTTCTCGCTACCACCA-------CAAATATA----------CATACAATACATAACCGTTTATACATATAATAGAAATAAGAAGAGGAGAAGATAACTAAG-AACATACCAATACATAAATCATAT----AG---AAAAGTTTAATAAGAAA-GAAT-TTCGAGTGAAA---AAGTACATATA-TACTCA----------------GTAGAAACCGCAGTGGTTTTTTCTCT-------------------------T-TGGAAGT-ATTCTGCTTTTTTAAATA-TAATTT-GCCGAGAATATTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAACCGTTTATACATATAATAGA........................................................................................................................................................................................................................................2711.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TACTCA----------------GTAGAAACCGCAGT.......................................................................................2111.0010010000000
............................................................................................................................................................................................................................................................................................................CGGCAACGGACGCTCCT-TT-------TC-TCTG..............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAAGAGGAGAAGATAACTAAG-A............................................................................................................................................................................................................2511.0010010000000
.........................................................................................................................................................................................................................................................................................................................TCCT-TT-------TC-TCTGTTGCCGCAC---------............................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
droPer2
TC------AAA-AATAATTTTCAA--AAT-----TCTGG-CAG----T---------------------------C--------------ATTAAGTTGCAATCATAGAAAGTCCAT--AAATTTTTTAAAC-----------------------------------------T------TACAACGGAAACCTACTGT-------------------G---------TACTCT-----G--------------CTGCCA-CTGCGCTGCGCATTCCTTCATTAGCTTTTTTT-CTTCGGCGGCAACGGACGCTCCT-TT-------TC-TCTGTTGCCGCAC---------AGC----ATT---------------------------------------------------CGTTCGCACGCTTTTCTCGCTACCACCA-------CAAATATA----------CATACAATACATAACCGTTTATACATATAATAGAAATAAGAAGAGGAGAAGATAACTAAG-CACATACCAATACATAAATCATAT----AG---AAAAGTTTAATAAGAAA-GAAT-TTCGAGTGAAA---AAGTACATATGTATA--T---AC-TCA-------GTAGAAACCGCAGTGGTTTTTTCTCT-------------------------T-TGGAAGT-ATTCTGCTTTTTTAAATA-TAATTT-GCCGAGAATATTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCA-------GTAGAAACCGCAGTGGC....................................................................................2111.001001000
droWil2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCATTCCTTTAGTAGCTTTTTTCGCTTCGACGGCAACGGACACGCTC-T---------------TGCTTGCAC---------ATT----CTTGCTTAATTTCGTCTTTTTTGCTCTCTCTCTCTCTCGCTGTCTCGCCACTTTCCGCCGCACGCCAT---------------------------------------------------------------------------------------------------------------TAACCAC-CACAA----AA---ACAGAACAG-AACAGAA-AGGC-AGGAAAGGAAA---AGCAAC---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................ACGGACACGCTC-T---------------TGCTTG........................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
...............................................................................................................................................................................................................................................................................................TTTTTCGCTTCGACGGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
droVir3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GGCTGCGCATTCCGTTAGTTGCTTTTTTCACTTCGGCGGCGGCAGTCGTTTCC-TC-------TC-------GCCGCGC---------AGC----GAACGCC-------------------------------------------ATTTTAGCCGCACGCAT-TATTGCTACCACCA-------AAA------AATAAAATAAATCTTA------------------------------------------GGCCGACACATGCACATACCAATACATCACTTATAT----AG---AC-AGTGTAAAAT-------G-TGAAAAAAGAAAATC------------------------------------------------------------CCTTCATCTCTTGCAGCCTAAAAGTG-GGCAAACTTTTTCGCTTTTTAAATTA-TACGTT-GCCGGGCATAATTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................TTTTTCACTTCGGCGGCGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
.................................................................................................................................................................................................................................................................................................TTTCACTTCGGCGGCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CTTTTTTCACTTCGGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GGCTGCGCATTCCGTTAGTTGCTTTTTTCACTTCAGCGGCGGCAGTCGCTCTC-TT-------TC-------GCCGCGC---------AGC----AAACGCC-------------------------------------------ATTTCAGCCGCACAT-ATTATTGCTACCACCA-------A------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................TT-------TC-------GCCGCGC---------AGC----AAACGCC-------------------------------------------...................................................................................................................................................................................................................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................................................................TTTTCACTTCAGCGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.....................................................................................................................................................................................................................................................................................................ACTTCAGCGGCGGCAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
droGri2
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GGTTGCGCATTCCGTTAGTCGCTTTTTTCACTTCAGCGGCGGCGGTCGCTCTCCTT-------T---TTCTCGCCGCGC---------ATC----ATTCGTTA-------------------------------------------TTATAGCCGCACACTT-TATTGCTACCACCA-------AAAATAAAAAATAAAATAAATCTAA------------------------------------------GGCCGACACATGCACATACCAATAGATCATTCATAT----AG---AC-AGTGTAAATT-------G-TGAAAAA--------------------------------------------------------------------GCTTTAACGGTTGCAGCCTAAAAGT--AGGCAACACTTCTGCTTTTTAACTTA-TACGTT-GCCGGACCTAATTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:06 PM