ID:

dsi_26427

 Coordinate:

2l:18920846-18920995 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.1 -6.7 -6.7

Flybase annnotation

intron [2l_18921032_18921101_-]; CDS [2l_18920996_18921031_-]; exon [2l_18920996_18921031_-]; intron [2l_18920680_18920995_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

--------------####################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAAAAATCGAAAAGTTTGGCGAGAACCAAACGCGACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAAAGATCTTTCTTTTCTGAATCGAGAAAATTGAAATATCCCCATTGGCTGACATGGTACTTCAAAATTTTAAATTTTAATTTTAGAAAAATAGGTCAAGAATCAACAAAGAAATACGAAAATATAGCTTGAGTTAGCACCACAAAAATTGGATCATTGATGAACTAAATTTGTGTTT
***************************************************************************************((((((....((((.(((((((....(((.((.....))))).........))))))).))))...))))))..........................***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902008
ovaries
 M024
male body		 M053
female body
.........................................CCACTCTCGGTAAGTGCCTTG............................................................................................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................ATAGGTCAAGAATCAACAAAGAA................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................AACGCGACAGTTTCCACTC........................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTGGAACCTTGATGAACAAAATT....... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................TCTGAATCGAGAAAATTGAAATATCCC........................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAATATAGCTTGAGT............................................ 15 0 5 1.00 5 0 0 5 0 0 0 0 0 0
............................................................................................................................................................................................................................TTGGATCATTGATGAACT............ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................ATCCCCATTGGCTGACCTG.......................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TTGGAACCTTGATGAACAAAATTTG..... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................TTAAAGATCTTACCCTTCTGAA............................................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................AGAATACAGCTTGAGTTA.......................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
........ACAAAGTTTGGCGAGAACC............................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................AAATATAGCTTGAGTT........................................... 16 0 5 0.20 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................AAAGAAATACGAAAA........................................................ 15 0 10 0.10 1 0 0 1 0 0 0 0 0 0
..............TTTGGGGTGAACCAAACG.......................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 1
...............................ACGACAGTTTCCGCTATCG........................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
..............TTTGGCGAGAGCCAA............................................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAATATAGCTTGAGC............................................ 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................CACGAAAGTCGGATCATTG................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
.....CTCGAAAAGTTTGGCGT.................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................TCGGGAAGTGCCTTGA........................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATTTTTAGCTTTTCAAACCGCTCTTGGTTTGCGCTGTCAAAGGTGAGAGCCATTCACGGAACAACGTTTACAATTTCTAGAAAGAAAAGACTTAGCTCTTTTAACTTTATAGGGGTAACCGACTGTACCATGAAGTTTTAAAATTTAAAATTAAAATCTTTTTATCCAGTTCTTAGTTGTTTCTTTATGCTTTTATATCGAACTCAATCGTGGTGTTTTTAACCTAGTAACTACTTGATTTAAACACAAA
*****************************************************************((((((....((((.(((((((....(((.((.....))))).........))))))).))))...))))))..........................*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................TCGAACTCAATCTTG...................................... 15 1 10 8.00 80 79 0 0 1 0 0 0
.....................................................................................................................................................................................................TCGAACTCAATCTTGGGGTTG................................ 21 3 1 7.00 7 7 0 0 0 0 0 0
.....................................................................................................................................................................................................TCGAACTCAATCTTGG..................................... 16 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................GTGTACAGTTTCTAGAAGGAAA................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TCGAACTCAATCTTGGGGT.................................. 19 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGCTTTCAGCCTAGTAAC................... 19 3 20 0.40 8 0 8 0 0 0 0 0
......................................................................................................................................................................................................CGAACTCAATCTTGGGGTTG................................ 20 3 4 0.25 1 0 0 1 0 0 0 0
..........................................................................................................................................CAAAATTTAAAATTAAAAT............................................................................................. 19 1 12 0.08 1 0 0 0 0 1 0 0
............................................................................................................................................................................TTAGTTGCTTCTTTAT.............................................................. 16 1 14 0.07 1 0 0 0 0 0 1 0
.................................................................................AAGAAAAGACTTAAC.......................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1
.......................................................................................................................................................................AGTTCTAAGTTGTTT.................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18920796-18921045 - dsi_26427 TAAAAATCGAAAAGT----TTGGCG---AGAACCAAACGC---GACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAAAGA-------TCTTTCTTT---------------TCT-GAAT--C-GAGAAAATTGAAAT-ATCCCCATTGGC---TGACATGGTACTTCAAAAT-TTT--------------------AAAT------TT-TAATT------------------TT--A------------------------------------------GAAA------------------------------------------------------------------------AATAGGTCAAGAATCA-----------------------------------------------------------------------A-CAAAG------------A-A-------------------------------ATACG-AAA--ATAT--------AGCTTGAGTTAGC---------------A--------CCACAAAAAT-TGGATCATTGATG----------------AACTAAAT-TTGTGTTT
droSec2 scaffold_7:3001775-3001988 - TAAAAATCGAAAAGT----TTGGCG---AGAACCAAACGC---GACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAAAGA-------TCTTTCTTT---------------TCT-GAAT--C-GAGACAATTGAAAT-ATCCCCATTGGC---TGACATGGTACTTCAAAAT-TTT--------------------AAAT------TT-TAATT------------------TT--A------------------------------------------GAAA------------------------------------------------------------------------AATAGGTCTAGGATCA-----------------------------------------------------------------------A-CAAAG------------A-A-------------------------------ATACG-A--------------------------------------------A--------CCACA------------------G----------------AACTAAAT-TTGCGTTG
dm3 chr2L:19385469-19385719 - TTTAAATCTAAAAGT----TTGGGG---AGAACCAAACGT---GACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAACGA-------TCTTTCTTT---------------TCT-GAAT--C-GAGAAAATTGAAAT-ATTCCCATTGGC---TGACATGGTACTTCAAAAT-TTTG-------------------AAAT------TT-AAATT------------------TT--A------------------------------------------GAAA------------------------------------------------------------------------AATATGTCTAGAATCA-----------------------------------------------------------------------A-CAAAG------------G-A-------------------------------ATACA-AAT--ATAT--------AGCTTAGTTTAGC---------------A--------CCGCAAAACT-AAGATCAATGCTG----------------AATTAAAT-TTTTGTTG
droEre2 scaffold_4845:4909230-4909467 + TTAAAATCCTAAAGT----TTGGCC---AGAACCAAACGC---GACAGTTTTCACTCTCGGTAAGTGCCTTGTTGCAAATGTTGAAGA-------TCTTTCATT---------------TCC-GAAT--C-GAGAAAATTGAAAT-TTCCCCATTGGC---TGACATGGTACTTCAAAAT-TTT--------------------AAAT------TA-TAACT------------------GT--A------------------------------------------GA-----------------------TAAATA-T-CATA-GATCACTGGGT-----------------------AAAAATATTTCTAAAATCA-----------------------------------------------------------------------A-CAAAA----------------------------------------------CTGCA-AAT--ATAT--------AATTTATTTTAAC-------------------------------------------------------------------------TTAT-CTA
droYak3 2R:5883257-5883530 - TTAAAATCTTTAAGT----TTGGCG---AGAACCAAACGC---GACAGTTTTCACTCGCGGTAAGTGCCTTGTTGCAAATGCT-AAGA-------ACTTTCTTT---------------TCC-GAAT--C-GAGAAACTTGAAAT-TTCCCCATTGGC---TGACATGGTACTTACAAAT-TTT--------------------AAAT------TT-TAATTAAAAAAAAA------------------------------------------------------------------------------------------------GTCATTGGGT-----------------------AAAAATATGTCTATAATCA-----------------------------------------------------------------------A-CAAAA------------AAA-------------------------------ATGCG-AATGCATAT--------AATTTATTTTAGT-----GCAG--TCAAA--------CCTCA---------A---------TCAAACTGAATTTAAAAACTAAAT-TGTTGTGG
droEug1 scf7180000409463:1701538-1701721 - TAT-AATATT-ATTTACACTCAAA--GTAGATTCAAACGC---GACAGTTTTCACTCTCGGTAAGTGCCTGGTGGCAAATGTTAAAGA-------TTTTTCTTT---------------TTT-GATT--A-CAAAAAATTGAAAT-TTCCCCATTGGC---TGGCATGGCACTTCAAAAT-TC--------------------CAA-T--------C-----GAAATTAATTCGAA----------------------------------------------------------------T----------------------------------------------------------------------------TA------AT-----------------------------AATA------------------------------A--------------------T-------------------------------TTAT------------------------------------------------------------------------------------------------------------GAAAT
droBia1 scf7180000302422:4253192-4253420 + ATTTAATATACATTT----TTGTTT---AGACCCAAACGC---GACAATTTCCACTCTCGGTAAGTGCCCTGTGGCAAATGTTAAAGA-------TCTTTCTTT---------------TTT-TAAT--C-ACAAAAATTGAAAT-TTCCCCATTGGC---TGACATGGCACTTTAAAGT-TG--------------------TTA-T--------A-----AAAATTAAATCAAT----------------------------------------------------------------TGGTTGTA-CTGT--AGT-T-GGTT-AGACACTGGGC-----------------------AAAA-T-CTTTAAAAATCAACAG---T-----------------------------AACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------AACACA-------ATTT
droTak1 scf7180000410539:24362-24683 + CCTCAAATTCAATAT----TTAG-T---AGATCTAAACGC---GAAGATTTTCACTCTCGGTAAGTGCCTTGTGGCAAATGATAAAGA-------TCTTTCTTT---------------TTT-GTTT--C-AAAAAAATTGAAAT-TTCACCATTGGC---TTGCATGGCACTTGAAAAA-TT--------------------TAA-T--------C-----AAAATTAGATCGAT----------------------------------------------------------------AGAATTAGAAAGT--ATT-T-GGTA-AAACACTGGCT-----------------------TAAAGAAATTTAAAAATCAAGAA---T-----------------------------AACAAATATTTCGGCTATTTGTTCTAGAGCTTGAA-AATAATCGATATTTTTGA-TATTTTCACAGTATCGATTCGATAATATCAATGTGTTCAAT--CTG---------------------------------------------------------------------------------------------T-CGATATTT
droEle1 scf7180000491046:3593768-3594094 + CCACAATTTTTTTTT-TAATATTTT---AGACCCAAACGT---GATAGTTTTCAGTCTCGGTAAGTGCCGTGTGGCAAATGTTGAAGA-------TCTTTCTTT---------------TTT-TGAT--T-AAAAAAAATGAAATTTCCCCCATTGGC---TGACATGACACTTCAAAAT-TT--------------------AAA-T--------T-----AAATCGAAATTGAG----------------------------------------------------------------TGGCTTAGAATAT--TTT-TTTTTAAAATAACTGGGT-----------------------AAAAAGCTTTCTAAAAACAATGTAAATTAATTTTATTTATGTGTTACATTATGTTTTG----------------------------------CAAGG------------AAG-------------------------------AAGTA-AATGGATTT--------AA-----AAACGTATTTTGA-----------------------AATT-TGAAACTTTAAGA----------------AACTTGAT-TTATTGAT
droRho1 scf7180000773222:19018-19255 - CCATAATTTTGAAAT----ATATTT---AGAACCAAACGC---GATGATTTTCAGTCTCGGTAAGTGCCGTGTGGCAAATGTTAAAGA-------TCTTTCTTT---------------TTTTGATTCCA-AAAAAAATTGAAAT-TTCCCCATTGGC---TAACATGACACTTTAAAAT-TT--------------------AAA-T--------C-----AAAAGTAAATCGAA----------------------------------------------------------------TGGTTAAAAAGAT--GTT-TAGGTA-GAGAACTGGGT-----------------------GAAAAACTTTCTAAAATCAATCATAAT-----------------------------AACA------------------------------A-CAAAA------------A---------------------------------------------------------------------------------------------------------------------------------------------------AAT
droFic1 scf7180000448563:3160-3374 + CCATAATTTTGATAT----TTGGGT---AGAACCAAACGG---GATGAATTCCACTCTCGGTAAGTGCCGTGTGGCAAATGTTGAAGA-------TCTTTCTTT---------------TTTTGAATACC-AAAAAAATTGAAAT-TTTTCCATTGGC---TGGCATGACACTTCAAAAT-TA--------------------TAA-T--------T-----CGGTTTTATTTTAA----------------------------------------------------------------TGGATAACCAGAT--ATTCGAAGTT-CTGATTTTCGT-----------------------TAAAAAAGTTTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA
droKik1 scf7180000302684:1004541-1004810 - TTG-----GTAA--A----ATGGTT---AGACAAAAACGG---AACGATTTCCATTCTCGGTAAGTGCAGTGTGGCAAATGTTGAAGA-------TTTTTCTTT---------------TTG-TATT--G-GCAAAAATTGAAAATTCCCCCATTGGC---TGGCATGGCACTTCAAAAT-TT--------------------AAA-T--------C-----GAAATTACTAAAATTCT-TT--AAAAAATTGTGTATGAAAGTATAAAAACTCTTTCATATTTCAAGAA-TGATTTCAAAGGAAAACCAAAT--AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATATAA--TATAAAAAACCTT------------------TA----------------AATTAAAT-TTTAGAAT
droAna3 scaffold_12916:5038843-5039074 + TAAA--ATATAATCT----TTGTTT---AGAAATAAACGC---GATGATTTTTATTCTCGGTAAGTGTCTTGTGGCAA-TGTTGAACA-------ATTTTCTTT---------------TTT-GAAT--TGGCAAAAACAGAAAT-TTTCCCATTGGC---GGACATGGCACGGTACAGT-TTTTACTCCA------------AAA-TCCGAAC--T-----------AAAT----TTTATGACAAAAAATTAT-TATATAA----------------------------------------------------------------------GGATTATTATATCAAGGAATTAATACTT------------------------------------------------------------------------------------------------G------------A-T-------------------------------A----------------------------------------------------------------------------------T----------------AAAATA------GTAAT
droBip1 scf7180000396366:138237-138499 + TAAAAAT---AATAT----TTGTTC---AGACAAAAACGC---GATGATTTTTATGGCCGGTAAGTGTCTTGTGGCAA-TGATGAGCA-------ATTTTCTTT---------------TTT-GAAT--TGGCAAAAATAGAAATATTCCCCATTGGC---TGACATGGCACTGTATAAT-TTTTAATAAAAAATTAC------------AAAC--A-----------AAAT----TTTAGGACTAAGACATAT-TTTAAAA-------------TGTAT------------------------------------------------------------ATATCAAG-AACCATTTTTT------------------------------------------------------------------------------------------------G------------A-A-------------------------------ATAAA-AAA--TTAG--------AGTTAAAATA-----------------------------------------ATCAGTGATT----------------A--TAAATCACGTGGCT
dp5 4_group4:6104302-6104453 + CCACAACGATGACGT----GTGGGTAGACGACTCAAACGA---GACGACTTCCATAGTCGGTAAGTGCCGTGTGGCAA-TGTTGATGAAAAATACGCTTTTGTT---------------TCC-TTTT--G-AAAAAAATGGCAAT-TTTCCCATTGGCAAGCAACATGGTACTCCAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_16:788571-788722 - CCACAACGATGACGT----GTGGGTAGACGACTCAAACGA---GACGACTTCCATAGTCGGTAAGTGCCGTGTGGCAA-TGTTGATGAAAAATACGCTTTTGTT---------------TCC-TTTT--G-AAAAAAATGGCAAT-TTTCCCATTGGCAAGCAACATGGTACTCCAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004516:65172-65384 + TCTGAAAATCGAAATGGAAATGGTT---AGATATAAACGTGGTGATGATTTCCATGCTCGGTAAGTGCCTTGTGGGC--------------------TTATGTTCTAAAAATGAATTAATCT-GATT--TGGCTTAAACACTTTT-TGGACAATTGGC----AACATGGTACTTAATCTA-----------------------A-------------CAGCT------------------TT--A------------------------------------------AA-----------------------AAAATA-T-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-AAA--ATTT--------AGCT------------------------A--------ACACAAGATGCAAACTCATTG--------------------------G-GAATGTTA
droVir3 scaffold_12723:3313024-3313251 - TTCCTGTGCTGATAA----ACGGTT---AGACACAAGCGG---GACGATTTCCACAGTCGGTAAGTGCCGTGCGGCAA-TATTGAAGA-------TAT--CATT---------------TTG-TATC--T-GACAAAATCGAAAT-TT-CCAATTGGC----AACATGGTACTAACCCAC-GCA----AAAAAATTATAAACGATT-T--------A-----AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAACCAAAA----------------------------------------------GTGCACAAT--ATGTAACAACTTTATTTGAGTATAC---------------A--------ACG-----------A---------TAAAAGTGAGCT-----------------AAAA
droMoj3 scaffold_6500:6482399-6482600 + TTG-----GTAACGA----ATGTCT---AGAAGCAAACGG---GACGATTTCCACAGTCGGTAAGTGCCGTGCGGCGTA-ATTGAAGA-------TCT--CATT------------T--TAT-GCTC--G-GCTAAAATTGAAAC-TT-TCAATTGGC----AACATGGTACTAACCCAC-TCA--------------------AAAT------TC-------------------------A--A------------------------------------------GAAATG-T-----AGGAAAAGCA----------------------------------------------------------CACTA-----------------------------------------------------------ATCTATTTTGA-AGCTGAA-CAAAA----------------------------------------------TTGAAT-----------------------------------------------------------------------------------------------------A-TTATGCGT
droGri2 scaffold_15126:157082-157268 + AAATAA--------------TGCTT---AGACTCAAACGG---GACGATTTCCACAGTCGGTAAGTGCCCTGCGGCAAATATTGAAGA-------TAT--CATT---------------TTG-TAAC--T-GACAAAATAGAAAT-TT-CCAATTGGC---T-ACATGGTACTAACACTACT-------------------------------------ACT------------------A----------------------------------------------TA-----------------------TAATC--T-TCTA-AATAATTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------A--------CCTA--------------------TAAAACTGTACTT-----TTATAC-TTATGTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAAAATCGAAAAGT----TTGGCG---AGAACCAAACGC---GACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAAAGA-------TCTTTCTTT---------------TCT-GAAT--C-GAGAAAATTGAAAT-ATCCCCATTGGC---TGACATGGTACTTCAAAAT-TTT--------------------AAAT------TT-TAATT------------------TT--A------------------------------------------GAAA------------------------------------------------------------------------AATAGGTCAAGAATCA-----------------------------------------------------------------------A-CAAAG------------A-A-------------------------------ATACG-AAA--ATAT--------AGCTTGAGTTAGC---------------A--------CCACAAAAAT-TGGATCATTGATG----------------AACTAAAT-TTGTGTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................CCACTCTCGGTAAGTGCCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATAGGTCAAGAATCA-----------------------------------------------------------------------A-CAAAG------------A-A-------------------------------.....................................................................................................................2312.00200200000000000000
...................................AACGC---GACAGTTTCCACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.......................................................................................................................TCT-GAAT--C-GAGAAAATTGAAAT-ATCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--ATAT--------AGCTTGAGT.....................................................................................1551.00500000000005000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGGATCATTGATG----------------AACT.............1811.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--ATAT--------AGCTTGAGTT....................................................................................1650.20100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------A-A-------------------------------ATACG-AAA--A.........................................................................................................15100.10100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--ATAT--------AGCTTGAGC.....................................................................................15200.05100000000001000000
droSec2
TAAAAATCGAAAAGT----TTGGCG---AGAACCAAACGC---GACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAAAGA-------TCTTTCTTT---------------TCT-GAAT--C-GAGACAATTGAAAT-ATCCCCATTGGC---TGACATGGTACTTCAAAAT-TTT--------------------AAAT------TT-TAATT------------------TT--A------------------------------------------GAAA------------------------------------------------------------------------AATAGGTCTAGGATCA-----------------------------------------------------------------------A-CAAAG------------A-A-------------------------------ATACG-A--------------------------------------------A--------CCACA------------------G----------------AACTAAAT-TTGCGTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........AAAGT----TTGGCG---AGAACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
TTTAAATCTAAAAGT----TTGGGG---AGAACCAAACGT---GACAGTTTCCACTCTCGGTAAGTGCCTTGTTGCAAATGTTAACGA-------TCTTTCTTT---------------TCT-GAAT--C-GAGAAAATTGAAAT-ATTCCCATTGGC---TGACATGGTACTTCAAAAT-TTTG-------------------AAAT------TT-AAATT------------------TT--A------------------------------------------GAAA------------------------------------------------------------------------AATATGTCTAGAATCA-----------------------------------------------------------------------A-CAAAG------------G-A-------------------------------ATACA-AAT--ATAT--------AGCTTAGTTTAGC---------------A--------CCGCAAAACT-AAGATCAATGCTG----------------AATTAAAT-TTTTGTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........AAAGT----TTGGGG---AGAACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000
...................TTGGGG---AGAACCAAACGT---GACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGGG---AGAACCAAACGT---GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000
....................TGGGG---AGAACCAAACGT---GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000
...................TTGGGG---AGAACCAAACGT---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000
...................TTGGGG---AGAACCAAACGT---GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
...........AAGT----TTGGGG---AGAACCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
...................TTGGGG---AGAACCAAACGT---GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
..........AAAGT----TTGGGG---AGAACCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................TTGGGG---AGAACCAAACGT---GACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGGG---AGAACCAAACGT---GACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTGGGG---AGAACCAAACGT---GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
.....................................CGT---GACAGTTTCCACTCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........AAGT----TTGGGG---AGAACCAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........AAGT----TTGGGG---AGAACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGTTTAGC---------------A--------CCGCAAAACT-AA............................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GG---AGAACCAAACGT---GACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGGG---AGAACCAAACGT---GACAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................G---AGAACCAAACGT---GACAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGT----TTGGGG---AGAACCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........AAAGT----TTGGGG---AGAACCAAACGT---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGGG---AGAACCAAACGT---GACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGT----TTGGGG---AGAACCAAACGT---GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............T----TTGGGG---AGAACCAAACGT---GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........AAAGT----TTGGGG---AGAACCAAACGT---GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GT----TTGGGG---AGAACCAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGT----TTGGGG---AGAACCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGT----TTGGGG---AGAACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............AGT----TTGGGG---AGAACCAAACGT---GACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CTCGGTAAGTGCCTTGTTGCAAATGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGT----TTGGGG---AGAACCAAACGT---GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGGG---AGAACCAAACGT---GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........AAAAGT----TTGGGG---AGAACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGGG---AGAACCAAACGT---GACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAAAATCCTAAAGT----TTGGCC---AGAACCAAACGC---GACAGTTTTCACTCTCGGTAAGTGCCTTGTTGCAAATGTTGAAGA-------TCTTTCATT---------------TCC-GAAT--C-GAGAAAATTGAAAT-TTCCCCATTGGC---TGACATGGTACTTCAAAAT-TTT--------------------AAAT------TA-TAACT------------------GT--A------------------------------------------GA-----------------------TAAATA-T-CATA-GATCACTGGGT-----------------------AAAAATATTTCTAAAATCA-----------------------------------------------------------------------A-CAAAA----------------------------------------------CTGCA-AAT--ATAT--------AATTTATTTTAAC-------------------------------------------------------------------------TTAT-CTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTAAAATCTTTAAGT----TTGGCG---AGAACCAAACGC---GACAGTTTTCACTCGCGGTAAGTGCCTTGTTGCAAATGCT-AAGA-------ACTTTCTTT---------------TCC-GAAT--C-GAGAAACTTGAAAT-TTCCCCATTGGC---TGACATGGTACTTACAAAT-TTT--------------------AAAT------TT-TAATTAAAAAAAAA------------------------------------------------------------------------------------------------GTCATTGGGT-----------------------AAAAATATGTCTATAATCA-----------------------------------------------------------------------A-CAAAA------------AAA-------------------------------ATGCG-AATGCATAT--------AATTTATTTTAGT-----GCAG--TCAAA--------CCTCA---------A---------TCAAACTGAATTTAAAAACTAAAT-TGTTGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................AAACGC---GACAGTTTTCACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................................................AAAAAA------------------------------------------------------------------------------------------------GTCATTGGGT-----------------------AAAA................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--TCAAA--------CCTCA---------A---------TCAAAC...........................1911.00100100000000
droEug1
TAT-AATATT-ATTTACACTCAAA--GTAGATTCAAACGC---GACAGTTTTCACTCTCGGTAAGTGCCTGGTGGCAAATGTTAAAGA-------TTTTTCTTT---------------TTT-GATT--A-CAAAAAATTGAAAT-TTCCCCATTGGC---TGGCATGGCACTTCAAAAT-TC--------------------CAA-T--------C-----GAAATTAATTCGAA----------------------------------------------------------------T----------------------------------------------------------------------------TA------AT-----------------------------AATA------------------------------A--------------------T-------------------------------TTAT------------------------------------------------------------------------------------------------------------GAAATSizeHit CountTotal NormTotal
No Reads
droBia1
ATTTAATATACATTT----TTGTTT---AGACCCAAACGC---GACAATTTCCACTCTCGGTAAGTGCCCTGTGGCAAATGTTAAAGA-------TCTTTCTTT---------------TTT-TAAT--C-ACAAAAATTGAAAT-TTCCCCATTGGC---TGACATGGCACTTTAAAGT-TG--------------------TTA-T--------A-----AAAATTAAATCAAT----------------------------------------------------------------TGGTTGTA-CTGT--AGT-T-GGTT-AGACACTGGGC-----------------------AAAA-T-CTTTAAAAATCAACAG---T-----------------------------AACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------AACACA-------ATTTSizeHit CountTotal NormTotal
No Reads
droTak1
CCTCAAATTCAATAT----TTAG-T---AGATCTAAACGC---GAAGATTTTCACTCTCGGTAAGTGCCTTGTGGCAAATGATAAAGA-------TCTTTCTTT---------------TTT-GTTT--C-AAAAAAATTGAAAT-TTCACCATTGGC---TTGCATGGCACTTGAAAAA-TT--------------------TAA-T--------C-----AAAATTAGATCGAT----------------------------------------------------------------AGAATTAGAAAGT--ATT-T-GGTA-AAACACTGGCT-----------------------TAAAGAAATTTAAAAATCAAGAA---T-----------------------------AACAAATATTTCGGCTATTTGTTCTAGAGCTTGAA-AATAATCGATATTTTTGA-TATTTTCACAGTATCGATTCGATAATATCAATGTGTTCAAT--CTG---------------------------------------------------------------------------------------------T-CGATATTTSizeHit CountTotal NormTotal
No Reads
droEle1
CCACAATTTTTTTTT-TAATATTTT---AGACCCAAACGT---GATAGTTTTCAGTCTCGGTAAGTGCCGTGTGGCAAATGTTGAAGA-------TCTTTCTTT---------------TTT-TGAT--T-AAAAAAAATGAAATTTCCCCCATTGGC---TGACATGACACTTCAAAAT-TT--------------------AAA-T--------T-----AAATCGAAATTGAG----------------------------------------------------------------TGGCTTAGAATAT--TTT-TTTTTAAAATAACTGGGT-----------------------AAAAAGCTTTCTAAAAACAATGTAAATTAATTTTATTTATGTGTTACATTATGTTTTG----------------------------------CAAGG------------AAG-------------------------------AAGTA-AATGGATTT--------AA-----AAACGTATTTTGA-----------------------AATT-TGAAACTTTAAGA----------------AACTTGAT-TTATTGATSizeHit CountTotal NormTotal
No Reads
droRho1
CCATAATTTTGAAAT----ATATTT---AGAACCAAACGC---GATGATTTTCAGTCTCGGTAAGTGCCGTGTGGCAAATGTTAAAGA-------TCTTTCTTT---------------TTTTGATTCCA-AAAAAAATTGAAAT-TTCCCCATTGGC---TAACATGACACTTTAAAAT-TT--------------------AAA-T--------C-----AAAAGTAAATCGAA----------------------------------------------------------------TGGTTAAAAAGAT--GTT-TAGGTA-GAGAACTGGGT-----------------------GAAAAACTTTCTAAAATCAATCATAAT-----------------------------AACA------------------------------A-CAAAA------------A---------------------------------------------------------------------------------------------------------------------------------------------------AATSizeHit CountTotal NormTotal
No Reads
droFic1
CCATAATTTTGATAT----TTGGGT---AGAACCAAACGG---GATGAATTCCACTCTCGGTAAGTGCCGTGTGGCAAATGTTGAAGA-------TCTTTCTTT---------------TTTTGAATACC-AAAAAAATTGAAAT-TTTTCCATTGGC---TGGCATGACACTTCAAAAT-TA--------------------TAA-T--------T-----CGGTTTTATTTTAA----------------------------------------------------------------TGGATAACCAGAT--ATTCGAAGTT-CTGATTTTCGT-----------------------TAAAAAAGTTTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAASizeHit CountTotal NormTotal
No Reads
droKik1
TTG-----GTAA--A----ATGGTT---AGACAAAAACGG---AACGATTTCCATTCTCGGTAAGTGCAGTGTGGCAAATGTTGAAGA-------TTTTTCTTT---------------TTG-TATT--G-GCAAAAATTGAAAATTCCCCCATTGGC---TGGCATGGCACTTCAAAAT-TT--------------------AAA-T--------C-----GAAATTACTAAAATTCT-TT--AAAAAATTGTGTATGAAAGTATAAAAACTCTTTCATATTTCAAGAA-TGATTTCAAAGGAAAACCAAAT--AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATATAA--TATAAAAAACCTT------------------TA----------------AATTAAAT-TTTAGAATSizeHit CountTotal NormTotal
No Reads
droAna3
TAAA--ATATAATCT----TTGTTT---AGAAATAAACGC---GATGATTTTTATTCTCGGTAAGTGTCTTGTGGCAA-TGTTGAACA-------ATTTTCTTT---------------TTT-GAAT--TGGCAAAAACAGAAAT-TTTCCCATTGGC---GGACATGGCACGGTACAGT-TTTTACTCCA------------AAA-TCCGAAC--T-----------AAAT----TTTATGACAAAAAATTAT-TATATAA----------------------------------------------------------------------GGATTATTATATCAAGGAATTAATACTT------------------------------------------------------------------------------------------------G------------A-T-------------------------------A----------------------------------------------------------------------------------T----------------AAAATA------GTAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................ATTGGC---GGACATGGCACGGTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droBip1
TAAAAAT---AATAT----TTGTTC---AGACAAAAACGC---GATGATTTTTATGGCCGGTAAGTGTCTTGTGGCAA-TGATGAGCA-------ATTTTCTTT---------------TTT-GAAT--TGGCAAAAATAGAAATATTCCCCATTGGC---TGACATGGCACTGTATAAT-TTTTAATAAAAAATTAC------------AAAC--A-----------AAAT----TTTAGGACTAAGACATAT-TTTAAAA-------------TGTAT------------------------------------------------------------ATATCAAG-AACCATTTTTT------------------------------------------------------------------------------------------------G------------A-A-------------------------------ATAAA-AAA--TTAG--------AGTTAAAATA-----------------------------------------ATCAGTGATT----------------A--TAAATCACGTGGCTSizeHit CountTotal NormTotal
No Reads
dp5
CCACAACGATGACGT----GTGGGTAGACGACTCAAACGA---GACGACTTCCATAGTCGGTAAGTGCCGTGTGGCAA-TGTTGATGAAAAATACGCTTTTGTT---------------TCC-TTTT--G-AAAAAAATGGCAAT-TTTCCCATTGGCAAGCAACATGGTACTCCAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................GACTCAAACGA---GACGACTTCCATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................CAAACGA---GACGACTTCCATAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
droPer2
CCACAACGATGACGT----GTGGGTAGACGACTCAAACGA---GACGACTTCCATAGTCGGTAAGTGCCGTGTGGCAA-TGTTGATGAAAAATACGCTTTTGTT---------------TCC-TTTT--G-AAAAAAATGGCAAT-TTTCCCATTGGCAAGCAACATGGTACTCCAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCTGAAAATCGAAATGGAAATGGTT---AGATATAAACGTGGTGATGATTTCCATGCTCGGTAAGTGCCTTGTGGGC--------------------TTATGTTCTAAAAATGAATTAATCT-GATT--TGGCTTAAACACTTTT-TGGACAATTGGC----AACATGGTACTTAATCTA-----------------------A-------------CAGCT------------------TT--A------------------------------------------AA-----------------------AAAATA-T-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-AAA--ATTT--------AGCT------------------------A--------ACACAAGATGCAAACTCATTG--------------------------G-GAATGTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................ATAAACGTGGTGATGATTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200002
...........................................GATGATTTCCATGCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..................................AAACGTGGTGATGATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
............................AGATATAAACGTGGTGATGATTTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..........................................TGATGATTTCCATGCTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.00201001
droVir3
TTCCTGTGCTGATAA----ACGGTT---AGACACAAGCGG---GACGATTTCCACAGTCGGTAAGTGCCGTGCGGCAA-TATTGAAGA-------TAT--CATT---------------TTG-TATC--T-GACAAAATCGAAAT-TT-CCAATTGGC----AACATGGTACTAACCCAC-GCA----AAAAAATTATAAACGATT-T--------A-----AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAACCAAAA----------------------------------------------GTGCACAAT--ATGTAACAACTTTATTTGAGTATAC---------------A--------ACG-----------A---------TAAAAGTGAGCT-----------------AAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACCAAAA----------------------------------------------GTGCACAAT--ATGTAA....................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
.............................GACACAAGCGG---GACGATTTCCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA----------------------------------------------GTGCACAAT--ATGTAACAACT...............................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
............................AGACACAAGCGG---GACGATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
TTG-----GTAACGA----ATGTCT---AGAAGCAAACGG---GACGATTTCCACAGTCGGTAAGTGCCGTGCGGCGTA-ATTGAAGA-------TCT--CATT------------T--TAT-GCTC--G-GCTAAAATTGAAAC-TT-TCAATTGGC----AACATGGTACTAACCCAC-TCA--------------------AAAT------TC-------------------------A--A------------------------------------------GAAATG-T-----AGGAAAAGCA----------------------------------------------------------CACTA-----------------------------------------------------------ATCTATTTTGA-AGCTGAA-CAAAA----------------------------------------------TTGAAT-----------------------------------------------------------------------------------------------------A-TTATGCGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................CCACAGTCGGTAAGTGCCGTGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droGri2
AAATAA--------------TGCTT---AGACTCAAACGG---GACGATTTCCACAGTCGGTAAGTGCCCTGCGGCAAATATTGAAGA-------TAT--CATT---------------TTG-TAAC--T-GACAAAATAGAAAT-TT-CCAATTGGC---T-ACATGGTACTAACACTACT-------------------------------------ACT------------------A----------------------------------------------TA-----------------------TAATC--T-TCTA-AATAATTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------A--------CCTA--------------------TAAAACTGTACTT-----TTATAC-TTATGTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................AACGG---GACGATTTCCACAGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2225.001046
..................................AAACGG---GACGATTTCCACAGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.50312
...................................AACGG---GACGATTTCCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.00220
.....................................CGG---GACGATTTCCACAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50110
...................................AACGG---GACGATTTCCACAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101
...............................CTCAAACGG---GACGATTTCCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50110
..................................AAACGG---GACGATTTCCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110
...............................CTCAAACGG---GACGATTTCCACAGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50110
....................................ACGG---GACGATTTCCACAGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110
.................................CAAACGG---GACGATTTCCACAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50110
.......................................G---GACGATTTCCACAGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50110

Generated: 05/19/2015 at 11:42 AM