ID:

dsi_26422

 Coordinate:

x:5194569-5194830 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.8 -36.8 -36.8 -36.7

Flybase annnotation

CDS [x_5194860_5194922_+]; five_prime_UTR [x_5194550_5194859_+]; exon [x_5194550_5194922_+]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

-------------------------------###########################################################################################################################################################################################################################################################################################################################################
GGAGCTACCATCTCTAGAGCAACGGCCGCAGAAAAAAGATATACTATTCGGTAATTTACGCGTGGATTTAGCACGCGCCGTGAAACCAGAAGTTTCAGACCAGCCTTTCCGAGATCTGATCAGTGAACCTTGCGGGCTCCCAGCTCCGTAAGCACAAAGCAGGACATTCACAAACACATTTATCACTCCGTGTAGCGTTTGCGCCCATCCGTGCGTGCCTGTGTGTGTGTGTTGGTCGTCTGTGCGAGCGTGAGTGTGTTTGTGAATTGTCGGCTTTAATTTTGCAAGCTCGCTAAAGTTGTGTTTTCAAAGGACATCGCAAAGGAGTCGGAGCGCACAAGATGTCGTACCCGCCGCGGGCG
*****************************************************************************************************************.................(((((((..(((((.......(((((..(((((.(((.(((((((((((..........))))...)))))..........)).)))))))).)))))..)))))..)))))))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................................TGTGTGTGTTGGTCGTCTGTG...................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATCTGATCAGTGAACCTTGC..................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AAAGGAGTCGGAGCGCACAAG..................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTGTGCGAGCGTGAGTG.......................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GTTTGTGAATTGTCGGCTTAA.................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATCTGATCAGTGGACCTCACG.................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTCGGCTTTAATTTTGCAAGCT........................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........TCTCTAGAGCAACGGCCGCAGAAAAA...................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TCTGATCAGTGAACCTTGCGG................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................AATTGTCGGCTTTAATTTTGC............................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AACACATTTATCACTCCGTG.......................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................CATCGCAAAGGAGTCGGAGC............................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TCCGAGATCTGATCAGTGAACTTGC...................................................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCACAAAGCAGGACATT.................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................TTACGCGTGGATTTAGCACGCGCCGTGA....................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTGTGTTGGTCGTCTGTGCGAGCGTGAG............................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................CGAAATCTGATCAGTGGACCT........................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................CGAGATCTGATCAGTGAACCT........................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GTCTGTGCGAGCGTGAGTGTGTTTGT................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................TTCGGTAATTTACGCGTGGAT....................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGGTCGTCTGTGCGAGCGTT.............................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............AGAGCAACGGCCGCAGAAAAAAGAT.................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................ATCCGTGCGTGCCTGTGTG......................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................GTGCCTGTGTGTGTGTGTTGGTCGTC.......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................ATCCGTGCGTGCCTGTGTGTG....................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....CTACCATCTCTAGAGCAACGG................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CAGGAGTTTGAGACCAGCCT................................................................................................................................................................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................GTCGGAGCGCACAAGATGTCG............... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTTGGTCGTCAGTGGGGGCGTG.............................................................................................................. 23 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAGCAGGACATTCACAAACAC......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TATGATTTGTCGGCTTGAATTTT............................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TGTTTGTAAATTGTCAGCTTTAAA.................................................................................. 24 3 4 0.50 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................TCTGATCAGTGGACCT........................................................................................................................................................................................................................................ 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTGTTGGTCGTCTGTGCGTTT................................................................................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGTGCGTGCCTGTGTGTGTGTGA.................................................................................................................................. 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGCATCAGTGTGTTTGTGA................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................GCCGTGAAACCTGAC............................................................................................................................................................................................................................................................................... 15 2 20 0.20 4 0 0 0 0 0 0 0 0 4 0 0 0 0
....................................................AATTTACGCGTGGTT....................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................ATCTGATCAGTGGACCTCA...................................................................................................................................................................................................................................... 19 3 12 0.17 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................GGGGATGTAGCACGCGC............................................................................................................................................................................................................................................................................................ 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................GCGCCGGGAAACCAG................................................................................................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................TGTGTGTGTGTTGGTC............................................................................................................................. 16 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................TCGTGAAACCAGAGGTT............................................................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................TGAAGCTAGAGGTTTCAGA....................................................................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................GCCTGTGTGTGTGTGT.................................................................................................................................. 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................ATTTTGCACGCGCCGTCGA...................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................................................ACAAGAGTCGGCGCGCAC........................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AAAGTTGTGATTCCAAAGA................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..ATCTACCATGTCTAGGG....................................................................................................................................................................................................................................................................................................................................................... 17 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CCTCGATGGTAGAGATCTCGTTGCCGGCGTCTTTTTTCTATATGATAAGCCATTAAATGCGCACCTAAATCGTGCGCGGCACTTTGGTCTTCAAAGTCTGGTCGGAAAGGCTCTAGACTAGTCACTTGGAACGCCCGAGGGTCGAGGCATTCGTGTTTCGTCCTGTAAGTGTTTGTGTAAATAGTGAGGCACATCGCAAACGCGGGTAGGCACGCACGGACACACACACACAACCAGCAGACACGCTCGCACTCACACAAACACTTAACAGCCGAAATTAAAACGTTCGAGCGATTTCAACACAAAAGTTTCCTGTAGCGTTTCCTCAGCCTCGCGTGTTCTACAGCATGGGCGGCGCCCGC
**********************************************************************************************************************.................(((((((..(((((.......(((((..(((((.(((.(((((((((((..........))))...)))))..........)).)))))))).)))))..)))))..)))))))***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 O001
Testis
 O002
Head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
...............................................................................................TTTTGGTCGGAAAGGCTCTAGA..................................................................................................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTCGGAAAGGCTCTAGACTAG................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....ATGGTAGAGATCTCGGCGCC................................................................................................................................................................................................................................................................................................................................................. 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGTCGGAAAGGCTCTAGACTA.................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATGGCACTCTGGTCTTCAAAGT......................................................................................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGTCGGAAAGGCTCTAGACT................................................................................................................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GTGTTTCGTCCTGTAAGTGT.............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................CGGAAAGGCTCTAGACTAGT................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGTCGGAAAGGCTCTAGACT................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGTCGGAAAGGCTCTAGAC.................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTCGGGAAGGCTCTAGACTAG................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGGTCGGAAAGGCTCTAGACT................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGCGGGTAGGCACGCACG................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................AAGGCTCTAGACTAGTCACTT........................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CAAAGTCCGGTCGGAAAGGCT.......................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTCGGAAAGGCTCTAGGCTAG................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................GCGGCACTCTGGTCTTCAAAG.......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGAACGCCCAAGTGTGGAGGCA..................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGGGAACGCCCAAGGGTGGAGGC...................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTGTAAGTGTTTGTGTGGATA................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGCAAACGCGGGTAGGCA...................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................CAGACACGCTCGCACTCACA......................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................CCGGCGTCTTTTTTCTATATG.............................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................TCTGGTCGGAAAGGCTCTAGAC.................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......TGGTAGAGATCTCGGCGCCTG............................................................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGAAGGCTCTAGACTAGTCACTT........................................................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGAACGCCCAAGGATGGAGGCA..................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAGTGGGAACGCCCGAGGAT............................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
......TGGTAGAGATCTCGGCGCCT................................................................................................................................................................................................................................................................................................................................................ 20 3 8 0.50 4 4 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGAGGGTGGAGGCA..................................................................................................................................................................................................................... 15 1 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACGCCCAAGGATGGAGGCA..................................................................................................................................................................................................................... 19 3 8 0.38 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAGTGGGAACGCCCGAGGA............................................................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................AACGCCCAAGGGTGGAGGCAA.................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACGCCCAAGGGTGGAGGC...................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................CCCCGAGGGTCGAGGCAA.................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1
.......GGTAGAGATCTCGGCGCCTG............................................................................................................................................................................................................................................................................................................................................... 20 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAAGTCAGGTCGGAAA.............................................................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................CCATTAAATGCGGCCCTATA..................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................TCCTCAAACTCTGGTCGGAC............................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................ATCGGGCGCGGCACTTG..................................................................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................GGAACGCCCGAGGCT............................................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................CCATTAAATGCGCAG.......................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................CCCCCGAGGGTGGAGGC...................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................AAAACGTGCGCGGCA......................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AAGGTTCTAGACTAG................................................................................................................................................................................................................................................. 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CCCGAGGGTGGAGGCAAGC.................................................................................................................................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAAGTCTGGTCGGGTAG............................................................................................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AAAAAAGTTTCCTGAGGCGT......................................... 20 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................GTGGGAACGCCCGAGGCT............................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................TCAGTGGGAACGCCCG................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:5194519-5194880 + dsi_26422 G-----GA-GCTACCATCTCTAGAG-----CAACGGCCGCAGAA-----A--AA---AGA--TATACTATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAA-CCAGAAGTTTC------------A---------G------ACC-AGCCTT------TCCGAGATCTG--------ATCAGTGAAC-CTTGCGGGCT--CCCAGCTCCGTAAGCACAAAGC-----A----GGACA--TTC-ACAAACACATTTATCACTCCGTGTAGCGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGT--G--------------------------TTGG-------------TCGTCTGTGCGAG---CG----TG--AGTGTGTTTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGTG-----------------------TTTTC-AAAGGA------------CA--------T------------CGCAAAGGAGTCGGA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droSec2 scaffold_4:1197590-1197953 - G-----GA-GCTACCATCTCTAGAG-----CAACGGCCGCAGAA-----A--AA---AGA--TATACTATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAA-CCAGAAGTTTC------------A---------G------GCC-AGCCTT------TCCGAGATCTG--------ATCAGTGAAC-CTTGCGGGCT--CCCAGCTCCGTAAGCACAAAGC-----A----GGACA--TTC-ACAAACACATTTATCACTCCGTGTAGTGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGTGTG--------------------------TTGG-------------TCGTCTGTGCGTG---CG----CG--AGTGTGTTTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGTG-----------------------TTTTC-AAAGGA------------CA--------T------------CGCAAAGGAGTCGGA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
dm3 chrX:5560096-5560459 + G-----CA-GCTACCATCTCTAGAG-----CAACGGCTGCAGAA-----A--AA---AGA--TATTCTATTCGGTAA-TT--------T----ACGCGTGGATTTATCACGCGCC-GTGAAC-CCAGAAGTTAC------------A---------G------GCC-AACCTT------TCCGAGATTCG--------ATCAGTGAAC-CTTGCGGGCG--TCCAGCTTCGTAAGCACGAAAC-----A----GGACA--TTC-ACACACATATTTATCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGTGTG--------------------------TCG-------------CTCGTCTGTGCGTG---CG----TG--AGTGTGTTTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGTG-----------------------TTTTC-AAAGGA------------CA--------T------------CGCAAAGGAGTCGCA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droEre2 scaffold_4690:2912944-2913306 + G-----CA-GCTACCATCCCTAGGA-----CAACGGCCGCAGAA-----A--AA---GCA--GATTCTATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAC-ACAAAAGTTGC------------A---------G------GCC-AGCCGT------CCCGTGATCTG--------TTCAGTGAAC-CTTGCGGGCG--CCCAGCTCCGGAAGCAGGAAAT-----A----GGACA--TCG-ACACTCACATTTGCCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTGTGTCTGTGTG--------------------------TTG-------------CTCGTCT-----------G----TG--TGTGGGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGC-TGCG-----------------------TTTTT-AAAGGA------------CA-----GCAT------------CACAAAGGAGTCGCA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droYak3 X:2908844-2909207 - G-----CA-GCTACCATCCCTAGAG-----CAACGGCCGCAGAA-----A--AA---GGA--GATTCTATTCGGTAA-TT--------T----ACGCGTGGATATAGCACGCGCC-GTGAAA-CCAGAACTTGC------------A---------G------GCC-AGCCGT------CCCGAGATCTG--------CTCAGTGAAC-CTCGCGGGCG--TACAGCTCAGGAAGCAGGAAAC-----A----GGACA--TCC-ACACTCACATTTACCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GCGTACCTG----TGTGTG----TGTGCG--------------------------TTG-------------CTCGTCT-----------G----TG--TGTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGGG-----------------------TTTTT-AAAGGA------------CATCAGGACAT------------CATAAAGCAGTCGCG-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droEug1 scf7180000409095:598547-598920 + C-----CA-GCTACCATCTCTAGAGCAG---AGCGGCCGCAGAATTGTGAAAAA---GGA--AA---GATTCGGTAA-TT--------T----ACGTGTGGATTTACAAAGTGCC-GTGAAC-TCAGCACTTTC------------AGCAGCCGCA---------------TT------CCCGAGATCTT--------CTTAGTGATC-CCTGCTGGCG--CTTAGTTCCAGAAGCAAGAAAC-----A----GGACA--TCC-GTACTCACATATTTCACTTCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GTGCGTGTG----TGTGTT----TGTGTG--------------------------ACAG----TCCAGTAGC----------------------TG--TTTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCACGCTCA-AGT-TGAG-----------------------TTTAT-AAAGGA------------CA-----------------------CAAAGGATTCGCAGGC-GGAATTGAAA-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droBia1 scf7180000302069:265059-265428 - G-----CA-GCTTCCATCTCTAGACTAGAGCAGCGGCCGCAGAA-----A-AAA---GCA--GA---GATTCGGTAA-TT--------T----ACGCGTGGATTAAGCACGCGC----GAAC-ACAGCACTTGA------------AGCAGCCGCAG------GCT-AGCCGC------CCCGAGATCCT--------TTAAGTGATG-CCCTCGGGCG--CCCAGCTCCTGAACCGGTAAAG-----A----GGACA--TCC-GCACTCACCTTTGCCACTCCGTGTGGCGTTAGCGCC--CATC-----------CG--------T--GTGTGTGTA----TGTG----------TC--------------------------CCAG----TCCAGTCGCT---------------CG--------CTTGTGTGTGTGAAT-TGTCGGCTTTAA-C----------TTGCA-AGCACGCTAA-AGT-TCTG-----------------------TTTCT-AAAGGA------------CA-----------------------CAAAGGATTTGCAGGC-GGAACGGAAA-CG----------C-----------------ACAAGATGTCTTACCCACCGCGG---GCG
droTak1 scf7180000415289:576665-577056 - G-----CA-GCTACCATCTCTAGACCAGAGCAGCGGCCGCAGAA-----AAAAA---GGA-------GATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAC-CCAGCAGTTGC------------AGCAGGCTCAG------CCC-AGCCGA------CCCGAGACCCT--------TTTAGTTATC-CTTGCGGGCT--CGCAGCTCCAGGAC----------GA--CCA-C--CA--ACC-GCACTCACATTTGCCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GTGTGTGTG----TGTGT----------GCTGGCGTGTATGTGTG------CCTGCCTGTCAGTGCA------------------GTTTG----CG--TGTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCACGCTAA-AGT-TGTG---------------------TGTTTTT-AAAGGA------------CA-----------------------CAAAGGATACGCGGGC-GGAACTAAAA-CG----------C-----------------ACAAGATGTCCTACCCACCGCGG---GCG
droEle1 scf7180000491001:894007-894407 - A-----CA-GCTTTCATCTCTAGAG-----CAGCGGCCTCTGAA-----AAAAA---GGAGAGA---GATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAATCTAGCAGTTAA------------AGTAGCCGCAG------GAA-AGTCCA------CCCGAGATCCG--------CTTAGTGATC-CTGGCAGGCGGTCCCA--TCCGGAAGCAGAGAAC-----A----GGACA--TCC-GCACTCACATTTACCACTCCGTGTGGCGTTTGCGCCCCCGTC-----------CGTGT--------GTGTGTTTG----TGTGTG----TGTGTG--------------TG--CGTTCGTGCCCG---------TCACT----CGTGTGTG---TG----TG--TGTGCGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCAAAGCACGCCGA-AACCTAAG-----------------------TTTTCCTAAGGA------------GC-----------------------CAAAGGATTCGCAGGC-GGAATTGAAG-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droRho1 scf7180000779976:717247-717626 - TGCTAGCA-GCTTCCATCTCTAGAA-----CAGCGGCCTCAGAA-----A--AAAAAGGGGAGA---GATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAC-CCAGCACTTGC------------AGCAGCCGCAG------AAA-AGTCCA------CCCGAAATCCT--------CTTAGTGATC-CTTTCTTGCG--CCCGACTCCGGGAACAGAAAAC-----G----GGACA--TCC-GCATTCACATTTACCACTCCGTGTGGCGTTTGCGCT--CGTC-----------CG--------T--GTGTGTGTG----TCTG--------------------------TG------CGTGCCCG---------TCGCT---------------CG----TG--TGTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCACGCTGA-AGT-TTGG-----------------------TTTTG-GAAGGA------------CA-----------------------CAAAGGATTCGCAGGCAGGAATTAAAG-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCG
droFic1 scf7180000454072:2551362-2551721 - G-----TGAACTTCCATCTCTAGAG-----CAGCGGCCGCAGAGTTGTGAAAAA---GGA--GA---GATTCGGTAA-TT--------T----ACGCGTTGAATCAGCACGCGCT-GTGAAC-CCAACAATTGC------------A---------G------AAC-AACTCA------CCCGAGACCCT--------TTTAGTGATC-CTTGCGGACA--CATAGGTCCGGAAACAGGAAAA-----A----GGACA--TCC-ACACTCGCATTTACCACTCCGTGTGGCGTTTGCGCC--CATT-----------CG--------T--GCGTGTGTG----TGTGTG----TGAGT--------------------------GACCG---------TCG----TTT-----------T----TGTGCCTGTGTGTGTGAAT-TGTCGGCTTTTA-T---------TTTGCA-AGCACGCTAA-AGT-TGAG-----------------------GTG-T-AAAGGA------------TA-----------------------CAAGGGCTTCACA-------------ATTA----------G-----------------CTAAGATGTCGTACCCGCCGCGG---GCG
droKik1 scf7180000302698:1099064-1099497 - GG---GCA-ACTACCATCCCTAGAA-----CAGCGGCCAGAGTTTTGTGAA----------------AATTCGGTAA-TTTCTTCTTATT--TACGTGGACATTTTGCAAGCGCCGGCGTAA-CCAGCCCCCGC------------CTGCAGCACCGT-GCAAGCCGAATTGTGTATTACCC--GATCCG-----ATTCTCAGTGATC-CCAACGGACG----GAGGCCCAGAAA----------GGCT----C--CA--AATACACAGCACATT-CCCACTCCGTGTGGCGTTTGCGCC--CAGCCAGCCTGCGTCTGTGTGTGTGTT-GTGTGCCTG----TGTG--------------------------TG------TGTA---G---------TTG----TG----C---TTGTG----CCTGTCCGTGTGTGTGAAT-TGTCGGCTTTCCTATTTTATTTTTTTGCA-AACACGCTAA-AAA-TT--------------------GTTAGTTTTT-AAAGGATTTTCGTAAATAAT--TGGCCAT--------------CCAAGG-------AGCA-CAA--AAAA-GG----------G-----------------ACAATATGTCATACCCGCCACGGGGGGCA
droAna3 scaffold_13117:3236516-3236896 + G-----AC-ATACACATCTCTAGAG-----CAGCGGCCGCAGAGTTGTGAAAAA---GAA--GATTGGATTCGATTTTTTTT---TAGTTTT-CGGCGTGTTTTTTGCATGCCTTTGTGGAA-CCAGCTACTCCAGGAC---------TAGAAGCAG------GCC-ATCCGG-------CAGTGAACT-CAATCAATTTTAGTGAT-----------T--TTGAGTTACTAAAACCC--AATAGTACA----C--CATAATT-CAACGCACATT-CCCACTCTT--TTGCGTGTGTGTG---------------------------T---CGTGTCTG----TGTGTG----TGCGT--------------GTG------CGTGCCTG---------GTG----------C---GTTTG----TCTGTGTGTGTGTGTAATT-TGTCGGCTTTAA-T----------TTGCA-AGCACGCCAGTAGT-TGCG-----------------------ATTTG-AAA-AC------------TA--------TCTGAAACCGGA--------------GA-------------G-CA----------G-----------------GCGAAATGTCGTACCCACCAAGG---GCG
droBip1 scf7180000395970:153822-154191 + G-----AC-GGTACCATCTCTAGAG-----CAGCGGCCGCAGAGTTGTGAAAAA---GAA--GATTGAACTCGCTTT-TTTA---TAGTTAT-CGGCGTGTTTTTTGCATGCCTTTGTGGAA-GCAGTTACTCCAAGACCAGAAGCA---------G------GCC-ACCCGC-------CAGTGAACT-CAATCAATTGAAGTGAT-----------T--TTGAGTTACTAAAA--GCCAATAGTACA----C--CATAATT-CCACGCATATT-CCCACTCTT--TTGCGTGTGTGT-----------------------------G-GCGTATCTG----TGTG--------------------------TG------CGTGCCTG---------GTG----------C---GTTTT----CC--TGTGTCTGTGTAATT-TGTCGGCTTTAA-T----------TTGCA-AGCAAGCCAGTAGT-TTCG-----------------------GTT-A-AAATAC------------TA--------TCTTAAACCGGA--------------TA-------------G-CA----------G-----------------GCAAAATGTCGTACCCACCAAGG---GCG
dp5 XL_group1e:566309-566675 + A-----AATTTTGCCATCTCTACAG-----CAGCGGCCGCAGAGTTGTAAA-AA---GAA--GA--CAATTAAATAA-AT--------TT--AACGTGTAG-TTTTGTATGTGTACGAAAAATTTCGCACTCAT------------CATAAACTTAGTTGAAAGTC-AATGGT------C----GACTAA--------ATTTGCCATCACTTTCGGCTA--TACAGTGG----AGTAAA------GC--TTACCGACA--TAA-CAACACACATT-C---TCCTGTGTGGCGTTTGCGCG--TATC-----------GCTGT------G-GTGTGCTTG----TGTG------------------------------------TG---G---------TTG----C---------ATTTA----AC--TGTGTGTGTGTATTC-TGTCGGCTTATA-T----------TTGCA-CGCACGCCAA-CAT-TTG----------------------------G-AAAATA------------TA-----------------------TAGAAAAGGCGAAAGCA-AAG--AAAAGTC----------G-----------------GCAAAATGTCCTATCCCCCGCGT---CCT
droPer2 scaffold_30:646090-646456 - A-----AATTTTGCCATCTCTACAG-----CAGCGGCCGCAGAGTTGTAAA-AA---GAA--GA--CAATTAAATAA-AT--------TT--AACGTGTAG-TTTTGTATGTGTACGAAAAATTTCGCACTCAT------------AATAAACTTAGTTGAAAGTC-AATGGT------C----GATTAA--------ATTTGCCATCACTTTCGGCTA--TACAGTGG----AGTAAA------GC--TTACCGACA--TAA-CAACACACATT-C---TCCTGTGTGGCGTTTGCGCG--TATC-----------GCTGT------G-GTGTGCTTG----TGTG------------------------------------TG---G---------TTG----C---------ATTTA----AC--TGTGTGTGTGTATTC-TGTCGGCTTATA-T----------TTGCA-CGCACGCCAA-CAT-TTG----------------------------G-AAAATA------------TA-----------------------TAGAAAAGGCGAAAGCA-AAG--AAAAGTC----------G-----------------GCAAAATGTCCTACCCCCCGCGT---CCT
droWil2 scf2_1100000004515:805213-805377 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCGTTTGCACGCGTATC-----------CCTGT------GTGCGTGCGTGTGTGTGTGTG----TGTGT--------------------------GTGCG---------TCT----CT------TT---CG----TG--TGGCTGTGTGTGTTT-TGTCGGCTTTAA-A---------TTT-CA-T--------------TTC------------------------TTTTG-------------------------------------------------------------------------GCAAAAAAGCGGACAAAACGACAACAATTAGAAAATGTCATATCCACCGCGT---GCT
droVir3 scaffold_12928:321685-321876 + G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTGTATGTGTA--TGCT-----------TG--------C--GTGCGACTG----TATATG----TGTAC--------------GAG------CGTGCATG---------TTG----C---------GTATGTGTGTG--TGTGTGTGTCTGAATGTGTCGGCTTTAA-T----------TTACA-CGCACCCCAA-CAA---CAA-------TATACAAAATATTAGTATTT-AAACA--------------------------------GGAAGGCAAAACATAAGGA-------------A-C-----------A-----------------ACAAAATGTCATATCCACCGCGA---GCG
droMoj3 scaffold_6328:518717-518918 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCGTGTGCGCG--CGTG-----------CA--------T--GTGTGCGTG----TGTGTT----TGTGTG--------A----GTGAGCGAATGTG--------------------------CTTG---CATGTGTG--TTGGTGTGTATGAATGTGTCGGCTTTAA-T----------TCGCA-CGCACGCCAA-CAA---CAAATACAAAAATACAAAATAATAGTATTT-AAAA-A------------CA-----------------GGAAGGCACAACATAAGGA-------------A-CA----------A-----------------CCAAAATGTCATATCCACCGCGT---GCG
droGri2 scaffold_15203:6761924-6761949 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGATGTCATATCCACCGCGT---GCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G-----GA-GCTACCATCTCTAGAG-----CAACGGCCGCAGAA-----A--AA---AGA--TATACTATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAA-CCAGAAGTTTC------------A---------G------ACC-AGCCTT------TCCGAGATCTG--------ATCAGTGAAC-CTTGCGGGCT--CCCAGCTCCGTAAGCACAAAGC-----A----GGACA--TTC-ACAAACACATTTATCACTCCGTGTAGCGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGT--G--------------------------TTGG-------------TCGTCTGTGCGAG---CG----TG--AGTGTGTTTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGTG-----------------------TTTTC-AAAGGA------------CA--------T------------CGCAAAGGAGTCGGA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................TGTG----TGT--G--------------------------TTGG-------------TCGTCTGTG.................................................................................................................................................................................................................................................2113.00300000000100002000
.........................................................................................................................................................................................ATCTG--------ATCAGTGAAC-CTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGTCGGA-------------G-CG----------C-----------------ACAAG........................2112.00200000000000002000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGCGAG---CG----TG--AGTG............................................................................................................................................................................................................................1812.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCTTTAA-T---------TTTGCA-AGCT..............................................................................................................................................................................2211.00110000000000000000
................TCTCTAGAG-----CAACGGCCGCAGAA-----A--AA---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..........................................................................................................................................................................................TCTG--------ATCAGTGAAC-CTTGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TGTCGGCTTTAA-T---------TTTGC....................................................................................................................................................................................2111.00101000000000000000
...........................................................................................................................................................................................................................................................................AACACATTTATCACTCCGTG.............................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------T------------CGCAAAGGAGTCGGA-------------G-C..........................................................2011.00101000000000000000
.........................................................................................................................................................................................................................................AGCACAAAGC-----A----GGACA--TT......................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...............................................................................T--------T----ACGCGTGGATTTAGCACGCGCC-GTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................G----TGT--G--------------------------TTGG-------------TCGTCTGTGCGAG---CG----TG--AG..............................................................................................................................................................................................................................2811.00100000010000000000
.....................................................................................................................................................................................CGAGATCTG--------ATCAGTGAAC-CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGCGAG---CG----TG--AGTGTGTTTGT.....................................................................................................................................................................................................................2611.00100010000000000000
.....................................................................TTCGGTAA-TT--------T----ACGCGTGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................TGG-------------TCGTCTGTGCGAG---CG----TT--................................................................................................................................................................................................................................2011.00100000000000001000
.....................AGAG-----CAACGGCCGCAGAA-----A--AA---AGA--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000100000000000
...............................................................................................................................................................................................................................................................................................................ATC-----------CG--------T--GCGTGCCTG----TGTG.................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................GTGCCTG----TGTGTG----TGT--G--------------------------TTGG-------------TCGTC.....................................................................................................................................................................................................................................................2611.00100000000000100000
...............................................................................................................................................................................................................................................................................................................ATC-----------CG--------T--GCGTGCCTG----TGTGTG----...........................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..........CTACCATCTCTAGAG-----CAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGA-------------G-CG----------C-----------------ACAAGATGTCG..................2111.00100100000000000000
...............................................................................................................................................................................................................................................AAGC-----A----GGACA--TTC-ACAAACAC............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................GT--G--------------------------TTGG-------------TCGTCTGTGCGTT---T.........................................................................................................................................................................................................................................2140.25100000000000001000
.............................................................................................................................................................................................................................................................................................................................CG--------T--GCGTGCCTG----TGTGTG----TGT--G--------------------------A..........................................................................................................................................................................................................................................................................2340.25100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................TGTGTG----TGT--G--------------------------TTGG-------------TC........................................................................................................................................................................................................................................................1690.11100000000001000000
..............................................................................................................................................................................................................................................................................................................................................GCCTG----TGTGTG----TGT--G--------------------------T..........................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
G-----GA-GCTACCATCTCTAGAG-----CAACGGCCGCAGAA-----A--AA---AGA--TATACTATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAA-CCAGAAGTTTC------------A---------G------GCC-AGCCTT------TCCGAGATCTG--------ATCAGTGAAC-CTTGCGGGCT--CCCAGCTCCGTAAGCACAAAGC-----A----GGACA--TTC-ACAAACACATTTATCACTCCGTGTAGTGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGTGTG--------------------------TTGG-------------TCGTCTGTGCGTG---CG----CG--AGTGTGTTTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGTG-----------------------TTTTC-AAAGGA------------CA--------T------------CGCAAAGGAGTCGGA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-AAAGGA------------CA--------T------------CGCAAAGGAGTC.............................................................................2411.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................G--AGTGTGTTTGTGAAT-TGT.............................................................................................................................................................................................................1911.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTG---CG----CG--AGTGTGTTTGT.....................................................................................................................................................................................................................2211.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................TTGG-------------TCGTCTGTGCGTG---CG----CG--................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................AGTGTTTGCGCC--CATC-----------CG--------.....................................................................................................................................................................................................................................................................................................................................1811.0010010
.........................................................................GTAA-TT--------T----ACGCGTGGATTTAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AAAGGA------------CA--------T------------CGCAAAGGAGT..............................................................................2111.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------T------------CGCAAAGGAGTCGGA-------------G-C..........................................................2011.0010010
....................................................................................................GATTTAGCACGCGCC-GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGTGAAT-TGTCGGC.........................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................ACATTTATCACTCCGTGTAGT.........................................................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................GTG--------------------------TTGG-------------TCGTCTGTGCGTG---C.........................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................CAAAGC-----A----GGACA--TTC-ACAAACACA...........................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
..............................................................................TT--------T----ACGCGTGGATTTAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.................................................................................................GTGGATTTAGCACGCGCC-GTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................................................................................................................................................................................................................................................................................GTGTG--------------------------TTGG-------------TCGTCTGTGCGTG---C.........................................................................................................................................................................................................................................2311.0010100
..............................................................................................................................................................................................................................................................................................GTAGTGTTTGCGCC--CATC-----------CG--------T--GC................................................................................................................................................................................................................................................................................................................................2311.0010100
.............................................................................................................CGCGCC-GTGAAA-CCAGAAGTTTC------------A---------G------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
..............................................................................................................................................................................................................................................................................................................................G--------T--GCGTGCCTG----TGTGTG----TGT........................................................................................................................................................................................................................................................................................................2050.2010100
dm3
G-----CA-GCTACCATCTCTAGAG-----CAACGGCTGCAGAA-----A--AA---AGA--TATTCTATTCGGTAA-TT--------T----ACGCGTGGATTTATCACGCGCC-GTGAAC-CCAGAAGTTAC------------A---------G------GCC-AACCTT------TCCGAGATTCG--------ATCAGTGAAC-CTTGCGGGCG--TCCAGCTTCGTAAGCACGAAAC-----A----GGACA--TTC-ACACACATATTTATCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGTGTG--------------------------TCG-------------CTCGTCTGTGCGTG---CG----TG--AGTGTGTTTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGTG-----------------------TTTTC-AAAGGA------------CA--------T------------CGCAAAGGAGTCGCA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
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mbn2		V074
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ML-DmBG1-C1		V076
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CME-W2		V086
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fGS/OSS		V092
Male-body		V093
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S2-R+		V095
S2-R+		V096
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Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CGCAAAGGAGTCGCA-------------G-CG----------C-----------------ACAAG........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................GGATTTATCACGCGCC-GTGAAC-CC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GA--TATTCTATTCGGTAA-TT--------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AC------------A---------G------GCC-AACCTT------TCCGAGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................G--------------------------TCG-------------CTCGTCTGTGCGTG---CG----TG--AGTG............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTAGAG-----CAACGGCTGCAGAA-----A--AA---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................A--TATTCTATTCGGTAA-TT--------T----A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTACCCGCCGCGG---GCG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TGTCGGCTTTAA-T---------TTTGC....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCC--CATC-----------CG--------T--GCGTGCCTG----TGT..................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAC-----A----GGACA--TTC-ACACACATATTTAT......................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TCGGTAA-TT--------T----ACGCGTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CGCGCC-GTGAAC-CCAGAAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTGCGTG---CG----TG--AGTGT...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................G----TG--AGTGTGTTTGTGAAT-................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TGTGTG--------------------------TCG-------------CTCGTCTGTGCG...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................GAAAC-----A----GGACA--TTC-ACACACA.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTGCGTG---CG----TG--AGTGTG..........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TC-----------CG--------T--GCGTGCCTG----TGTGTG----TG.........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................CAGAA-----A--AA---AGA--TATTCTATTCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................TGAAC-CTTGCGGGCG--TCCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................ACGAAAC-----A----GGACA--TTC-ACAC................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................ATCAGTGAAC-CTTGCGGGCG--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GTG--------------------------TCG-------------CTCGTCTGTGCGTG---..........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AGTGAAC-CTTGCGGGCG--TCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CACGCGCC-GTGAAC-CCAGAAGTTAC------------A---------G------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATC-----------CG--------T--GCGTGCCTG----TGTGTG----TGTG.......................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CACACATATTTATCACTCCGT..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCA-------------G-CG----------C-----------------ACAAGATG.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................G----TGTGTG--------------------------TCG-------------CTCGTCTGTGC................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............ATCTCTAGAG-----CAACGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................G----TGTGTG----TGTGTG--------------------------TCG-------------CTCGTCTGTG.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCA-------------G-CG----------C-----------------ACAAGATG.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGATGTCGTACCCGCCGC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................TCCGTGTGGCGTTTGCGCC--CA............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGAGTCGCA-------------G-CG----------C-----------------ACA..........................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTG---CG----TG--AGTGTGT.........................................................................................................................................................................................................................1840.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TG----TGTGTG----TGTGTG--------------------------TCG-------------CTCG.......................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................G--------T--GCGTGCCTG----TGTGTG----TG.........................................................................................................................................................................................................................................................................................................1990.4440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGCGTG---CG----TG--AGTGTT..........................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
G-----CA-GCTACCATCCCTAGGA-----CAACGGCCGCAGAA-----A--AA---GCA--GATTCTATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAC-ACAAAAGTTGC------------A---------G------GCC-AGCCGT------CCCGTGATCTG--------TTCAGTGAAC-CTTGCGGGCG--CCCAGCTCCGGAAGCAGGAAAT-----A----GGACA--TCG-ACACTCACATTTGCCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTGTGTCTGTGTG--------------------------TTG-------------CTCGTCT-----------G----TG--TGTGGGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGC-TGCG-----------------------TTTTT-AAAGGA------------CA-----GCAT------------CACAAAGGAGTCGCA-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................CTCACATTTGCCACTCCGTGT............................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.........GCTACCATCCCTAGGA-----CAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
........................................................................................................................................................................................................................................................................................................CGCC--CATC-----------CG--------T--GCGTGCCTG----TGTGTGT..............................................................................................................................................................................................................................................................................................................2711.0010000100
...........................................................................AA-TT--------T----ACGCGTGGATTTAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
....................................................................................................................GTGAAC-ACAAAAGTTGC------------A---------G------GCC-AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.................................................................................................GTGGATTTAGCACGCGCC-GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CA-----GCAT------------CACAAAGGAGTCGC...........................................................................2111.0011000000
............................................................................................................ACGCGCC-GTGAAC-ACAAAAGTTGC------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000
...............................................................................................................................................................................................................................................................................................................................................................TCTGTGTG--------------------------TTG-------------CTCGTCT-----------G----TG--TGT.............................................................................................................................................................................................................................2411.0010000100
.................................................................................................................................................................................................................................................................................................................................................TG----TGTGTGTGTCTGTGTG--------------------------TTG-------------CTCGT......................................................................................................................................................................................................................................................2611.0010000010
droYak3
G-----CA-GCTACCATCCCTAGAG-----CAACGGCCGCAGAA-----A--AA---GGA--GATTCTATTCGGTAA-TT--------T----ACGCGTGGATATAGCACGCGCC-GTGAAA-CCAGAACTTGC------------A---------G------GCC-AGCCGT------CCCGAGATCTG--------CTCAGTGAAC-CTCGCGGGCG--TACAGCTCAGGAAGCAGGAAAC-----A----GGACA--TCC-ACACTCACATTTACCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GCGTACCTG----TGTGTG----TGTGCG--------------------------TTG-------------CTCGTCT-----------G----TG--TGTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCTCGCTAA-AGT-TGGG-----------------------TTTTT-AAAGGA------------CATCAGGACAT------------CATAAAGCAGTCGCG-------------G-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................CTCAGGAAGCAGGAAAC-----A----GGAC...........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................AA---GGA--GATTCTATTCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTCGTACCCGCCGC........1811.00110000000000
.......................................................................................................................................................................AGCCGT------CCCGAGATCTG--------CTCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................CGCAGAA-----A--AA---GGA--GATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCG-------------G-CG----------C-----------------ACAAGATGTCG..................2111.00100000010000
....................................................................................................................................................................................................................................CAGGAAGCAGGAAAC-----A----GGA............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGACAT------------CATAAAGC.................................................................................1820.50110000000000
droEug1
C-----CA-GCTACCATCTCTAGAGCAG---AGCGGCCGCAGAATTGTGAAAAA---GGA--AA---GATTCGGTAA-TT--------T----ACGTGTGGATTTACAAAGTGCC-GTGAAC-TCAGCACTTTC------------AGCAGCCGCA---------------TT------CCCGAGATCTT--------CTTAGTGATC-CCTGCTGGCG--CTTAGTTCCAGAAGCAAGAAAC-----A----GGACA--TCC-GTACTCACATATTTCACTTCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GTGCGTGTG----TGTGTT----TGTGTG--------------------------ACAG----TCCAGTAGC----------------------TG--TTTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCACGCTCA-AGT-TGAG-----------------------TTTAT-AAAGGA------------CA-----------------------CAAAGGATTCGCAGGC-GGAATTGAAA-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotal
No Reads
droBia1
G-----CA-GCTTCCATCTCTAGACTAGAGCAGCGGCCGCAGAA-----A-AAA---GCA--GA---GATTCGGTAA-TT--------T----ACGCGTGGATTAAGCACGCGC----GAAC-ACAGCACTTGA------------AGCAGCCGCAG------GCT-AGCCGC------CCCGAGATCCT--------TTAAGTGATG-CCCTCGGGCG--CCCAGCTCCTGAACCGGTAAAG-----A----GGACA--TCC-GCACTCACCTTTGCCACTCCGTGTGGCGTTAGCGCC--CATC-----------CG--------T--GTGTGTGTA----TGTG----------TC--------------------------CCAG----TCCAGTCGCT---------------CG--------CTTGTGTGTGTGAAT-TGTCGGCTTTAA-C----------TTGCA-AGCACGCTAA-AGT-TCTG-----------------------TTTCT-AAAGGA------------CA-----------------------CAAAGGATTTGCAGGC-GGAACGGAAA-CG----------C-----------------ACAAGATGTCTTACCCACCGCGG---GCGSizeHit CountTotal NormTotal
No Reads
droTak1
G-----CA-GCTACCATCTCTAGACCAGAGCAGCGGCCGCAGAA-----AAAAA---GGA-------GATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAC-CCAGCAGTTGC------------AGCAGGCTCAG------CCC-AGCCGA------CCCGAGACCCT--------TTTAGTTATC-CTTGCGGGCT--CGCAGCTCCAGGAC----------GA--CCA-C--CA--ACC-GCACTCACATTTGCCACTCCGTGTGGCGTTTGCGCC--CATC-----------CG--------T--GTGTGTGTG----TGTGT----------GCTGGCGTGTATGTGTG------CCTGCCTGTCAGTGCA------------------GTTTG----CG--TGTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCACGCTAA-AGT-TGTG---------------------TGTTTTT-AAAGGA------------CA-----------------------CAAAGGATACGCGGGC-GGAACTAAAA-CG----------C-----------------ACAAGATGTCCTACCCACCGCGG---GCGSizeHit CountTotal NormTotal
No Reads
droEle1
A-----CA-GCTTTCATCTCTAGAG-----CAGCGGCCTCTGAA-----AAAAA---GGAGAGA---GATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAATCTAGCAGTTAA------------AGTAGCCGCAG------GAA-AGTCCA------CCCGAGATCCG--------CTTAGTGATC-CTGGCAGGCGGTCCCA--TCCGGAAGCAGAGAAC-----A----GGACA--TCC-GCACTCACATTTACCACTCCGTGTGGCGTTTGCGCCCCCGTC-----------CGTGT--------GTGTGTTTG----TGTGTG----TGTGTG--------------TG--CGTTCGTGCCCG---------TCACT----CGTGTGTG---TG----TG--TGTGCGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCAAAGCACGCCGA-AACCTAAG-----------------------TTTTCCTAAGGA------------GC-----------------------CAAAGGATTCGCAGGC-GGAATTGAAG-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotal
No Reads
droRho1
TGCTAGCA-GCTTCCATCTCTAGAA-----CAGCGGCCTCAGAA-----A--AAAAAGGGGAGA---GATTCGGTAA-TT--------T----ACGCGTGGATTTAGCACGCGCC-GTGAAC-CCAGCACTTGC------------AGCAGCCGCAG------AAA-AGTCCA------CCCGAAATCCT--------CTTAGTGATC-CTTTCTTGCG--CCCGACTCCGGGAACAGAAAAC-----G----GGACA--TCC-GCATTCACATTTACCACTCCGTGTGGCGTTTGCGCT--CGTC-----------CG--------T--GTGTGTGTG----TCTG--------------------------TG------CGTGCCCG---------TCGCT---------------CG----TG--TGTGTGTGTGTGAAT-TGTCGGCTTTAA-T---------TTTGCA-AGCACGCTGA-AGT-TTGG-----------------------TTTTG-GAAGGA------------CA-----------------------CAAAGGATTCGCAGGCAGGAATTAAAG-CG----------C-----------------ACAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotal
No Reads
droFic1
G-----TGAACTTCCATCTCTAGAG-----CAGCGGCCGCAGAGTTGTGAAAAA---GGA--GA---GATTCGGTAA-TT--------T----ACGCGTTGAATCAGCACGCGCT-GTGAAC-CCAACAATTGC------------A---------G------AAC-AACTCA------CCCGAGACCCT--------TTTAGTGATC-CTTGCGGACA--CATAGGTCCGGAAACAGGAAAA-----A----GGACA--TCC-ACACTCGCATTTACCACTCCGTGTGGCGTTTGCGCC--CATT-----------CG--------T--GCGTGTGTG----TGTGTG----TGAGT--------------------------GACCG---------TCG----TTT-----------T----TGTGCCTGTGTGTGTGAAT-TGTCGGCTTTTA-T---------TTTGCA-AGCACGCTAA-AGT-TGAG-----------------------GTG-T-AAAGGA------------TA-----------------------CAAGGGCTTCACA-------------ATTA----------G-----------------CTAAGATGTCGTACCCGCCGCGG---GCGSizeHit CountTotal NormTotal
No Reads
droKik1
GG---GCA-ACTACCATCCCTAGAA-----CAGCGGCCAGAGTTTTGTGAA----------------AATTCGGTAA-TTTCTTCTTATT--TACGTGGACATTTTGCAAGCGCCGGCGTAA-CCAGCCCCCGC------------CTGCAGCACCGT-GCAAGCCGAATTGTGTATTACCC--GATCCG-----ATTCTCAGTGATC-CCAACGGACG----GAGGCCCAGAAA----------GGCT----C--CA--AATACACAGCACATT-CCCACTCCGTGTGGCGTTTGCGCC--CAGCCAGCCTGCGTCTGTGTGTGTGTT-GTGTGCCTG----TGTG--------------------------TG------TGTA---G---------TTG----TG----C---TTGTG----CCTGTCCGTGTGTGTGAAT-TGTCGGCTTTCCTATTTTATTTTTTTGCA-AACACGCTAA-AAA-TT--------------------GTTAGTTTTT-AAAGGATTTTCGTAAATAAT--TGGCCAT--------------CCAAGG-------AGCA-CAA--AAAA-GG----------G-----------------ACAATATGTCATACCCGCCACGGGGGGCASizeHit CountTotal NormTotal
No Reads
droAna3
G-----AC-ATACACATCTCTAGAG-----CAGCGGCCGCAGAGTTGTGAAAAA---GAA--GATTGGATTCGATTTTTTTT---TAGTTTT-CGGCGTGTTTTTTGCATGCCTTTGTGGAA-CCAGCTACTCCAGGAC---------TAGAAGCAG------GCC-ATCCGG-------CAGTGAACT-CAATCAATTTTAGTGAT-----------T--TTGAGTTACTAAAACCC--AATAGTACA----C--CATAATT-CAACGCACATT-CCCACTCTT--TTGCGTGTGTGTG---------------------------T---CGTGTCTG----TGTGTG----TGCGT--------------GTG------CGTGCCTG---------GTG----------C---GTTTG----TCTGTGTGTGTGTGTAATT-TGTCGGCTTTAA-T----------TTGCA-AGCACGCCAGTAGT-TGCG-----------------------ATTTG-AAA-AC------------TA--------TCTGAAACCGGA--------------GA-------------G-CA----------G-----------------GCGAAATGTCGTACCCACCAAGG---GCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................GCAGAGTTGTGAAAAA---GAA--GAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
...............................................................................................................................CTACTCCAGGAC---------TAGAAGCAG------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTG----TCTGTGTGTGTGTGTA....................................................................................................................................................................................................................2111.001000010
.......................................................................................................................................................................................................................................................................................................GTGTG---------------------------T---CGTGTCTG----TGTGTG----T..........................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCG-----------------------ATTTG-AAA-AC------------TA--------TCTGAAACCGGA--------------............................................................................2811.001100000
....................................CCGCAGAGTTGTGAAAAA---GAA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................TTTTAGTGAT-----------T--TTGAGTTACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
............................................................................................................................................................................................................................................................................................................................................................G----TGCGT--------------GTG------CGTGCCTG---------GTG----------C---.............................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................GTCTG----TGTGTG----TGCGT--------------GTG------CG.............................................................................................................................................................................................................................................................................2120.501000001
droBip1
G-----AC-GGTACCATCTCTAGAG-----CAGCGGCCGCAGAGTTGTGAAAAA---GAA--GATTGAACTCGCTTT-TTTA---TAGTTAT-CGGCGTGTTTTTTGCATGCCTTTGTGGAA-GCAGTTACTCCAAGACCAGAAGCA---------G------GCC-ACCCGC-------CAGTGAACT-CAATCAATTGAAGTGAT-----------T--TTGAGTTACTAAAA--GCCAATAGTACA----C--CATAATT-CCACGCATATT-CCCACTCTT--TTGCGTGTGTGT-----------------------------G-GCGTATCTG----TGTG--------------------------TG------CGTGCCTG---------GTG----------C---GTTTT----CC--TGTGTCTGTGTAATT-TGTCGGCTTTAA-T----------TTGCA-AGCAAGCCAGTAGT-TTCG-----------------------GTT-A-AAATAC------------TA--------TCTTAAACCGGA--------------TA-------------G-CA----------G-----------------GCAAAATGTCGTACCCACCAAGG---GCGSizeHit CountTotal NormTotal
No Reads
dp5
A-----AATTTTGCCATCTCTACAG-----CAGCGGCCGCAGAGTTGTAAA-AA---GAA--GA--CAATTAAATAA-AT--------TT--AACGTGTAG-TTTTGTATGTGTACGAAAAATTTCGCACTCAT------------CATAAACTTAGTTGAAAGTC-AATGGT------C----GACTAA--------ATTTGCCATCACTTTCGGCTA--TACAGTGG----AGTAAA------GC--TTACCGACA--TAA-CAACACACATT-C---TCCTGTGTGGCGTTTGCGCG--TATC-----------GCTGT------G-GTGTGCTTG----TGTG------------------------------------TG---G---------TTG----C---------ATTTA----AC--TGTGTGTGTGTATTC-TGTCGGCTTATA-T----------TTGCA-CGCACGCCAA-CAT-TTG----------------------------G-AAAATA------------TA-----------------------TAGAAAAGGCGAAAGCA-AAG--AAAAGTC----------G-----------------GCAAAATGTCCTATCCCCCGCGT---CCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................AAAGTC-AATGGT------C----GACTAA--------ATTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
....................................................................................................................................................................................................................................................................................C---TCCTGTGTGGCGTTTGCGC.................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................GCGCG--TATC-----------GCTGT------G-GTGTG.............................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................GCTGT------G-GTGTGCTTG----TGTG------------------------------------TG---G---------TTG----C---------A............................................................................................................................................................................................................................................2711.0010100000000
.......................................................................................................................................................ACTTAGTTGAAAGTC-AATGGT------C----C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............GCCATCTCTACAG-----CAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
............................................................................................................................................................................................................................................................................................................................................GTGCTTG----TGTG------------------------------------TG---G---------TTG----C---------ATT..........................................................................................................................................................................................................................................2111.0010100000000
droPer2
A-----AATTTTGCCATCTCTACAG-----CAGCGGCCGCAGAGTTGTAAA-AA---GAA--GA--CAATTAAATAA-AT--------TT--AACGTGTAG-TTTTGTATGTGTACGAAAAATTTCGCACTCAT------------AATAAACTTAGTTGAAAGTC-AATGGT------C----GATTAA--------ATTTGCCATCACTTTCGGCTA--TACAGTGG----AGTAAA------GC--TTACCGACA--TAA-CAACACACATT-C---TCCTGTGTGGCGTTTGCGCG--TATC-----------GCTGT------G-GTGTGCTTG----TGTG------------------------------------TG---G---------TTG----C---------ATTTA----AC--TGTGTGTGTGTATTC-TGTCGGCTTATA-T----------TTGCA-CGCACGCCAA-CAT-TTG----------------------------G-AAAATA------------TA-----------------------TAGAAAAGGCGAAAGCA-AAG--AAAAGTC----------G-----------------GCAAAATGTCCTACCCCCCGCGT---CCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................TAG-TTTTGTATGTGTACGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...................................................................................................................................................................................................................................................................................................GTTTGCGCG--TATC-----------GCTGT------G-GTGTGC............................................................................................................................................................................................................................................................................................................................2511.001000001
.........................................................................ATAA-AT--------TT--AACGTGTAG-TTTTGTATGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
................................................................................................................................................................................................................................................................CA--TAA-CAACACACATT-C---TCCTGT..............................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................A--TACAGTGG----AGTAAA------GC--TTACCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TTG----------------------------G-AAAATA------------TA-----------------------TAGAAAAGGC.............................................................................2411.001100000
..........................................................................................................................................................................................................................................................................................................CG--TATC-----------GCTGT------G-GTGTGCTT..........................................................................................................................................................................................................................................................................................................................2011.001010000
............GCCATCTCTACAG-----CAGCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................TT--AACGTGTAG-TTTTGTATGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
..............................................................................................CGTGTAG-TTTTGTATGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droWil2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCGTTTGCACGCGTATC-----------CCTGT------GTGCGTGCGTGTGTGTGTGTG----TGTGT--------------------------GTGCG---------TCT----CT------TT---CG----TG--TGGCTGTGTGTGTTT-TGTCGGCTTTAA-A---------TTT-CA-T--------------TTC------------------------TTTTG-------------------------------------------------------------------------GCAAAAAAGCGGACAAAACGACAACAATTAGAAAATGTCATATCCACCGCGT---GCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGTGTGTTT-TGTCGGC.........................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGCGGACAAAACGA.....................................1911.00100100
................................................................................................................................................................................................................................................................................................................................................................................................GTGCG---------TCT----CT------TT---CG----TG--TGGCT...........................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................T----CT------TT---CG----TG--TGGCTGTGTG......................................................................................................................................................................................................................1911.00101000
..................................................................................................................................................................................................................................................................................................................................................................GTGT--------------------------GTGCG---------TCT----CT------TT---CG----TG--TGG.............................................................................................................................................................................................................................2311.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGACAACAATTAGAA.........................1911.00100010
.............................................................................................................................................................................................................................................................................................................................................TGCGTGTGTGTGTGTG----TGTGT--------------------------GTGCG---------..............................................................................................................................................................................................................................................................26200.05100010
...........................................................................................................................................................................................................................................................................................................................................CGTGCGTGTGTGTGTGTG----TGTGT--------------------------G...........................................................................................................................................................................................................................................................................24200.05100001
................................................................................................................................................................................................................................................................................................................................GT------GTGCGTGCGTGTGTGTGT..................................................................................................................................................................................................................................................................................................................20200.05100100
........................................................................................................................................................................................................................................................................................................................................GTGCGTGCGTGTGTGTGTG.................................................................................................................................................................................................................................................................................................................19200.05100100
droVir3
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTGTATGTGTA--TGCT-----------TG--------C--GTGCGACTG----TATATG----TGTAC--------------GAG------CGTGCATG---------TTG----C---------GTATGTGTGTG--TGTGTGTGTCTGAATGTGTCGGCTTTAA-T----------TTACA-CGCACCCCAA-CAA---CAA-------TATACAAAATATTAGTATTT-AAACA--------------------------------GGAAGGCAAAACATAAGGA-------------A-C-----------A-----------------ACAAAATGTCATATCCACCGCGA---GCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCAAAACATAAGGA-------------A-...........................................................1811.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAAAACATAAGGA-------------A-C-----------A-----------------.............................1911.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................ATGTGTA--TGCT-----------TG--------C--GTGCGACTG----.....................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTGCATG---------TTG----C---------GTATGTGTGTG--TG..............................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTGTG--TGTGTGTGTCT.....................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCGTGTGCGCG--CGTG-----------CA--------T--GTGTGCGTG----TGTGTT----TGTGTG--------A----GTGAGCGAATGTG--------------------------CTTG---CATGTGTG--TTGGTGTGTATGAATGTGTCGGCTTTAA-T----------TCGCA-CGCACGCCAA-CAA---CAAATACAAAAATACAAAATAATAGTATTT-AAAA-A------------CA-----------------GGAAGGCACAACATAAGGA-------------A-CA----------A-----------------CCAAAATGTCATATCCACCGCGT---GCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................GAGCGAATGTG--------------------------CTTG---CATGTGTG--TTG.............................................................................................................................................................................................................................2612.002100001
..........................................................................................................................................................................................................................................................................................................................................................................................GAATGTG--------------------------CTTG---CATGTGTG--TTGGTGT.........................................................................................................................................................................................................................2611.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCTTTAA-T----------TCGCA-CG................................................................................................................................................................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAA-A------------CA-----------------GGAAGGCACAACATAAGGA-------------.............................................................2711.001000001
..............................................................................................................................................................................................................................................................................................................................A--------T--GTGTGCGTG----TGTGTT----TGT........................................................................................................................................................................................................................................................................................................20100.101100000
..............................................................................................................................................................................................................................................................................................................................A--------T--GTGTGCGTG----TGTGTT----TG.........................................................................................................................................................................................................................................................................................................19130.081100000
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGATGTCATATCCACCGCGT---GCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:51 AM