ID:

dsi_26403

 Coordinate:

2r:5709924-5710073 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATCGACCAGGAGCTGCCCAAGGAGGCCAAGTTCTTTGATGAGCTGGACTGTGAGTATTTTTGCCGAAGCCGCCCTACCCTCCTTCCGTCGAGTCAAATCGAGTTCGTTGCCTAAGTCTTTCGTTCGCCTGGCACAATTTGCATATTAGTTAACACGCCATGCTTAACCTTGATCTTCGCTGCTCCTCCTCGATCGGGGCAGTTGTGAAACCCCCTTTTGAAAATCGGACTTGGGCCCCCGGCGAAAGTT
**************************************************....((............................(((((((((.......(((...((.((....(((........((.((((.......((......))......)))).))........)))....)).))..)))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................CTCGGTCGGGGCAGCTTTGAA......................................... 21 3 1 5.00 5 3 2 0 0 0 0 0 0
...........................................................................................................................................................................................TCTCGATCGGGGCAGCTTTGAA......................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
...........................CAAGAGCTTTGATGAGCT............................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TCGGTCGGGGCAGCTTTGAA......................................... 20 3 8 0.38 3 1 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................CGGACTTGGGCACCCG......... 16 1 4 0.25 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................CTCGGTCGGGGCAGCTTTGA.......................................... 20 3 8 0.25 2 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GATAAGCGGACTTGGGCC............. 18 2 6 0.17 1 0 0 0 1 0 0 0 0
............................................TGGACGGTGAGTACTTTTGT.......................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0
.........................GCGAAGAGCTTTGATGAGCT............................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0 0 0
..........GAGCTGCCCAAGGAGG................................................................................................................................................................................................................................ 16 0 11 0.09 1 0 0 1 0 0 0 0 0
....CACCAAGAGGTGCCCAAGGA.................................................................................................................................................................................................................................. 20 3 12 0.08 1 0 1 0 0 0 0 0 0
................................GCTTTGATGAGCGGGGCTG....................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0
.............................................................................TCCTCCTTCCGTCGAGA............................................................................................................................................................ 17 2 17 0.06 1 0 0 0 0 0 0 0 1
................................................................................................................................................................................................ATCGGGGCAGCTTTGAA......................................... 17 2 19 0.05 1 0 1 0 0 0 0 0 0
............................AAGAGCTTTGATGAGCT............................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0
..........................CGAAGAGCTTTGATGAGCT............................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GTGAAAATCGGACTTTGGT.............. 19 3 20 0.05 1 0 0 0 0 0 0 1 0
..................................TTTGATGAGCTGGAT......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................CGGTCGGGGCAGCTTTGAA......................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
............................TAGTGCTTTGATGAGCT............................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTAGCTGGTCCTCGACGGGTTCCTCCGGTTCAAGAAACTACTCGACCTGACACTCATAAAAACGGCTTCGGCGGGATGGGAGGAAGGCAGCTCAGTTTAGCTCAAGCAACGGATTCAGAAAGCAAGCGGACCGTGTTAAACGTATAATCAATTGTGCGGTACGAATTGGAACTAGAAGCGACGAGGAGGAGCTAGCCCCGTCAACACTTTGGGGGAAAACTTTTAGCCTGAACCCGGGGGCCGCTTTCAA
**************************************************....((............................(((((((((.......(((...((.((....(((........((.((((.......((......))......)))).))........)))....)).))..)))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
......................................................................................................................................................................................GAGGAGGAGCTAGCCCGG.................................................. 18 1 1 1.00 1 1 0 0
..................................................................................................................................................................................................................................CCTGAACCCGGGGGGTGC...... 18 2 3 0.33 1 0 1 0
.................................................................................................................................................................................................................................TCCTGAACCCGGGGGGTGCT..... 20 3 3 0.33 1 0 1 0
...............................................................GGCTTCGGCGGGAAG............................................................................................................................................................................ 15 1 3 0.33 1 0 0 1
..........CTCGACGGGTTCCTC................................................................................................................................................................................................................................. 15 0 11 0.09 1 1 0 0
.........................................................................................................................GCAAGGGAACCGTGTTA................................................................................................................ 17 2 17 0.06 1 1 0 0

Generated: 04/23/2015 at 09:13 PM