ID:

dsi_26388

 Coordinate:

2r:4911150-4911299 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4911191_4911413_+]; CDS [2r_4911191_4911413_+]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------###############################################################################################################################################################
GTTGCGATGAATAGCTCTTTGACAACAATGGAACTATTTGTGATTAGCATAATGGTTTCGTTCGCACACACATCACCTTGCAATCATTAGTATGCAAACTGTGGCCGAGACTCGAATGATTGAATGGCTGGCTGCCTGCACTTCCTCGTTCTTCCTTTGCATCCTGAGTGACCATTATTCCGTCATCTATCCCATTGCAGGTCCTTGTCCAGCCTCGTACTTCACATGCAACGATGGCTTCTGCATACCG
**************************************************..........................((.(((((((((((.(((((((....((..((((..(((..((......(((.....)))......)).))).))))))))))))).)))).))).......................))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
.........................................................................................................................................................................................................TCCTTGTCCAGCCTCGTACTTCACA........................ 25 0 1 1.00 1 1 0 0 0 0 0
..........................AAAGGAACGATTTGTGAT.............................................................................................................................................................................................................. 18 2 6 0.50 3 0 3 0 0 0 0
.......................................................................................TGGTATGTAAACAGTGGCCG............................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
.................................................................................................................................................................................................ATTGCAGGTTCTTGTCCT....................................... 18 2 13 0.08 1 0 0 0 1 0 0
..............................................................................................CGAACTGTGGCCGAGAC........................................................................................................................................... 17 1 14 0.07 1 0 0 0 0 1 0
...........................................................................................ATGCGAACTGTGGCCGAGGCTT......................................................................................................................................... 22 3 14 0.07 1 0 0 0 0 0 1
..........................................................CGGTAGCAAACACATCACC............................................................................................................................................................................. 19 3 17 0.06 1 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGGACCTTGTCCA....................................... 15 1 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CAACGCTACTTATCGAGAAACTGTTGTTACCTTGATAAACACTAATCGTATTACCAAAGCAAGCGTGTGTGTAGTGGAACGTTAGTAATCATACGTTTGACACCGGCTCTGAGCTTACTAACTTACCGACCGACGGACGTGAAGGAGCAAGAAGGAAACGTAGGACTCACTGGTAATAAGGCAGTAGATAGGGTAACGTCCAGGAACAGGTCGGAGCATGAAGTGTACGTTGCTACCGAAGACGTATGGC
**************************************************..........................((.(((((((((((.(((((((....((..((((..(((..((......(((.....)))......)).))).))))))))))))).)))).))).......................))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................ATAAGGCAGTTTATAGGATA....................................................... 20 3 6 0.50 3 0 2 1 0 0 0
..............GAGTAACTGTCGTTAACTTGAT...................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................CAGTAGATAGGGTTA...................................................... 15 1 6 0.17 1 0 0 0 1 0 0
.......................................................................................................................................................................................................CCAAGGAAAGGTCGGAGCAT............................... 20 3 8 0.13 1 0 1 0 0 0 0
.....................................................................................................................................................AGAAGGAAACGTAGA...................................................................................... 15 1 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................TGAAGGGGCAAGAAGAAAAT........................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0
............................................................................................................................................GGAGGAGCAAGAGGGAACCG.......................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0
........................................................................................................................................................................................TAGAGAGGGTAACATC.................................................. 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 08:02 AM