ID:

dsi_26370

 Coordinate:

3r:4458563-4458712 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4458713_4459597_-]; exon [3r_4458713_4459597_-]; intron [3r_4458289_4458712_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCCTACTCTGCCACTGCAACAACTTGTTCGCAGACGTCCAGCTGATAAAGTGAGCAAACACCGGCTAGCCGGATAACAGTGGTGGGAAATATCTAAGTACCTTTGTGTTGGTAAAAGAGAAGACCACATCTAACAACTAAAGTTAAGTCACAAGTCGAATCGAAATCATTGCTAAGAAGTTAACTACTAAACTGTTAGTGTCTGGTTTCCATATTCATATGATATAAATTGGTTTGAATATGATATGAT
**************************************************...........((((....)))).((((((((((((..(((.(((.((((((........))))...((...(((.....(((((.......))).))......)))...))..........)).))).)))..)))))..)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
......................................................................................GAAACATCTAAGTAC..................................................................................................................................................... 15 1 7 0.57 4 4 0 0 0 0
...............................................................................................................................................................................................................................TATAAATTGGTTTGAAT.......... 17 0 2 0.50 1 0 1 0 0 0
......................................................................................GAAACATCTAAGTACCT................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0
...............TACAGCAACTTGTTGGCAGACG..................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
....................................................................................CTGAAATATCTAAGTACCT................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0
......................................................................................GAAATATCTAAGTAAC.................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 1
....................................................................................................................................................................................................................TATTCATATGATCTGAATT................... 19 2 4 0.25 1 0 1 0 0 0
......................................................................................GAAACATCTAAGTACCTG.................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0
..........................................................................................................................GACCAGATCTTACAACT............................................................................................................... 17 2 9 0.11 1 0 0 0 0 1
.................................................................................................GTACCTTTGTGTTGGAT........................................................................................................................................ 17 2 16 0.06 1 0 0 0 0 1
..................................................................................................................................................................GAAACCACTGCTCAGAAGT..................................................................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CGGGATGAGACGGTGACGTTGTTGAACAAGCGTCTGCAGGTCGACTATTTCACTCGTTTGTGGCCGATCGGCCTATTGTCACCACCCTTTATAGATTCATGGAAACACAACCATTTTCTCTTCTGGTGTAGATTGTTGATTTCAATTCAGTGTTCAGCTTAGCTTTAGTAACGATTCTTCAATTGATGATTTGACAATCACAGACCAAAGGTATAAGTATACTATATTTAACCAAACTTATACTATACTA
**************************************************...........((((....)))).((((((((((((..(((.(((.((((((........))))...((...(((.....(((((.......))).))......)))...))..........)).))).)))..)))))..)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
..GGATGAGAAGGTGACG........................................................................................................................................................................................................................................ 16 1 2 0.50 1 1 0 0 0
..GGATGAGAGGGTGACG........................................................................................................................................................................................................................................ 16 1 2 0.50 1 1 0 0 0
.................................................................................................................................AGATTGTTGAGTTCA.......................................................................................................... 15 1 7 0.14 1 0 1 0 0
............................................................................TGTCAGCACCCTTTAAAG............................................................................................................................................................ 18 2 10 0.10 1 0 0 1 0
.................................CTGCTGGTCGACAATTT........................................................................................................................................................................................................ 17 2 14 0.07 1 0 1 0 0
.....................................AGGGCGACAAATTCACTCG.................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 1
.....CGAGACAGTGACCTTGTTG.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 08:23 AM