ID:

dsi_26364

 Coordinate:

3l:15967018-15967167 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_15966890_15967017_-]; exon [3l_15966890_15967017_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATTCCTTATCTCATTCACAAAGTTTTGGAATTTATGTTAGCTCACATATGATTTGCCATCTTTTCTTTGGATAAAATGCTGAGGAGAATTTTCCTTTGCGAGTTTCTATTTCACTCAGCGAAAGCTCACTCAAAACAAAAATATCACTCATACGCCGCTTGGGCCTTCGCTAGCCACTGGCTGCGCATTTGTCCAAACAGTTGAGTTTCGACATCGCCAGCATTCGCGCGTTTGCCTCAAAAGTGATT
**************************************************.................((((((((((..((.((((((....)))))).))((((.........))))(((....)))...........................(((.....)))...(((.((((...)))))))..)))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body
.......................................................................................................................................................................................................................................GTTTGCCTCAAAAGTGAT. 18 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................................................................................CGCGCGTTGGCCTCAA........ 16 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................TTCGACATCGCCAGCATT........................ 18 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................CGTTTGCCTCAAAAGTGAT. 19 0 1 1.00 1 1 0 0 0 0 0
..............ATTCACAAAGTGTTGGA........................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................AACCACTGGCTGCGAATTTGTC....................................................... 22 2 1 1.00 1 0 0 0 0 1 0
......................................................................................................................................................CATACGTCGCTGGGGCCC.................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CATAAGGAATAGAGTAAGTGTTTCAAAACCTTAAATACAATCGAGTGTATACTAAACGGTAGAAAAGAAACCTATTTTACGACTCCTCTTAAAAGGAAACGCTCAAAGATAAAGTGAGTCGCTTTCGAGTGAGTTTTGTTTTTATAGTGAGTATGCGGCGAACCCGGAAGCGATCGGTGACCGACGCGTAAACAGGTTTGTCAACTCAAAGCTGTAGCGGTCGTAAGCGCGCAAACGGAGTTTTCACTAA
**************************************************.................((((((((((..((.((((((....)))))).))((((.........))))(((....)))...........................(((.....)))...(((.((((...)))))))..)))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
......................................................................................................TCCAAGATAAAGTGAG.................................................................................................................................... 16 1 2 6.00 12 7 3 2 0 0 0 0 0
...........................................AGTGTATACTAAACG................................................................................................................................................................................................ 15 0 2 1.50 3 0 0 0 0 2 0 0 1
......................................................................................................TCCAAGATAAAGTGAGT................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TCGCGTGAGTTTTGTTTTTATAT....................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................GACCGACGCGTAAACAGGTTTGTCA............................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................................................................CCAAGATAAAGTGAG.................................................................................................................................... 15 1 7 0.86 6 3 1 1 1 0 0 0 0
......................................................................................................TCCAAGATAAAGTGA..................................................................................................................................... 15 1 12 0.58 7 5 1 0 0 0 0 1 0
......................................................................................................TCAAAGATAAAATGAGT................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 1 0
......................................................................................................TCCAAGATAAAGTGAGG................................................................................................................................... 17 2 8 0.38 3 1 1 1 0 0 0 0 0
.........................................................................................................................................................GGCGCCGAACCCGGAAGC............................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGTTGTAAGCGCGC.................. 15 1 14 0.07 1 1 0 0 0 0 0 0 0
......GAATAGGGTACGTGTTT................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 1 0
...........................................................................................................................TTGGACTGAGTTTTGTTT............................................................................................................. 18 2 15 0.07 1 1 0 0 0 0 0 0 0
.......................................GTCGAGCGTATACTAAA.................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0
........................................................................................................................GCTTTCGAGTCAGGTTCGT............................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................GCTGAAGCGGTCGTA......................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0
............................................................................................................................TCGAGTGAGTTTCTCTTTTA.......................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0
......................................................................................................TCTAAGATAAAGTGA..................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/23/2015 at 11:53 PM