ID:

dsi_26325

Coordinate:

3l:11484731-11485037 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-4.7	-4.5	-4.1

Flybase annnotation

five_prime_UTR [3l_11484651_11485106_-]; exon [3l_11484651_11485106_-]

Repeatable elements

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

####################################################################################################################################################################################################################################################################################################################################################################################################################### CGTGCCGTTCGTGTATGAAGTTCTTGCGCACAAAATAATTGTTTTTTATTGTAAATTAACGGATTTGTACATAATATGTGATGGTGCAAGAACATCTAAGAAAATAACGTTTTGTTCAGTATTTTGGCGTTGCGTCTATTCCGTTTTTTGTCACTGTTTTCTGTTCGTGTTTATGTGTGCGTGTATGTTCGTTTCGCATGTATGTGTGTAGGTGTATAGGTGTGTAGGAGGATAAGACAACTCTCCTAAAAACAAAAAAACCTTTGGTTAAGTTCAAATAATTGTTATTCGTCAAATATAACAACAACCAAGGGGACAAAAGTGAAAAACTAATTACCGGATGGTCTATGTTCGTAGCCCAATCAAGGGAATACCTGAACCAAAAAGAAACTAGTAACGGGTATAAA ************************************************************************************************************************....((((.((((..((..((......................)).))..))))..))))...****************************************************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	GSM343915 embryo	M024 male body	SRR618934 dsim w501 ovaries	M023 head	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553487 NRT_0-2 hours eggs
..............................................................................................................................................................TTCTGTTCGTGTTTATGTGTGCGTGTA..............................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................GTTTTCTGTTCGTGTTTATGTGTGCGT.................................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTGGCGTTGCGTCTATTCCGT.......................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................TATGTGATGGTGCAAGAACATC.......................................................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
......................................................ATTAACGGATTTGTACATAATATGTGA......................................................................................................................................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTGTAGGAGGATAAGACAACTCT...................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTCGTTTCGCATGTATGTGTGTAGG...................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...GCCGTTCGTGTATGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...GCCGTTCGTGTATGAAGTT.................................................................................................................................................................................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...............................................ATTGTAAATTAACGGATT......................................................................................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TTAAGTTCAAATAATTGTTATTCGTC..................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................GTTCGTTTCGCATGTATG...........................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................................................TTGTACATAATATGTGATGGTGCAAGA............................................................................................................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAAAAACTAATTACCGGATGGTC.............................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATTACCGGATGGTCTATGTTCGT....................................................	24	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AGCCCAATCAAGGGAATACCTGAACCAA........................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGTCACTGTGTTCTG....................................................................................................................................................................................................................................................	17	1	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................AACGTTTTGTTGGGTATTT...........................................................................................................................................................................................................................................................................................	19	2	5	0.40	2	0	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................AATCAAGGAAATTCGTGAACC..........................	21	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................AACGTTTTGTTGGGTCTTTT..........................................................................................................................................................................................................................................................................................	20	3	20	0.30	6	0	0	0	0	0	0	0	0	0	6	0
...................................................................................................................TCAGTCTTTTGGCGTTGG..................................................................................................................................................................................................................................................................................	18	2	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AACCAAGGAGACATAAGAG...................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

Anti-sense strand reads

GCACGGCAAGCACATACTTCAAGAACGCGTGTTTTATTAACAAAAAATAACATTTAATTGCCTAAACATGTATTATACACTACCACGTTCTTGTAGATTCTTTTATTGCAAAACAAGTCATAAAACCGCAACGCAGATAAGGCAAAAAACAGTGACAAAAGACAAGCACAAATACACACGCACATACAAGCAAAGCGTACATACACACATCCACATATCCACACATCCTCCTATTCTGTTGAGAGGATTTTTGTTTTTTTGGAAACCAATTCAAGTTTATTAACAATAAGCAGTTTATATTGTTGTTGGTTCCCCTGTTTTCACTTTTTGATTAATGGCCTACCAGATACAAGCATCGGGTTAGTTCCCTTATGGACTTGGTTTTTCTTTGATCATTGCCCATATTT ****************************************************************************************************************************************************************************************************************************....((((.((((..((..((......................)).))..))))..))))...************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
...........................................................................................................GCAAAACAAGTCATAAAACCG.......................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................AACGCAGATAAGGCAAAAAA..................................................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0
...............................................................................................GATTCTTTTATTGCAAAACAAG..................................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................GGAATTTTGCTTTTTTAGAAAC.............................................................................................................................................	22	3	3	0.67	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AAGATGCAGGCATCGGGTTAG...........................................	21	3	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGATGCAGGCATCGGGTTAG...........................................	20	2	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGATGCAGGCATCGGGTT.............................................	18	2	4	0.25	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGATGCGGGCATCGGGTTA............................................	19	3	13	0.23	3	3	0	0	0	0	0
..........................................................................................TTGTAGATTGTGTGATTGCAA........................................................................................................................................................................................................................................................................................................	21	3	5	0.20	1	1	0	0	0	0	0
.............................TGTTTTAATAAAAAAAAATAAGATT.................................................................................................................................................................................................................................................................................................................................................................	25	3	5	0.20	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................AGATGCAGGCATCGGGT..............................................	17	2	12	0.17	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAGGCATCGGGTTAG...........................................	15	1	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................AAAAGACAAGGACAAAT..........................................................................................................................................................................................................................................	17	1	12	0.08	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................AGATGCAGGCATCGGGCT.............................................	18	3	19	0.05	1	0	1	0	0	0	0
........................................................................................................................................................TGACAAAAGAAAAGCA...............................................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................AGATGCAGGCATCGGG...............................................	16	2	20	0.05	1	1	0	0	0	0	0
..........................................AAAAATAACATTGAAT.............................................................................................................................................................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	0	1
.............................................................................................TAGATTCTTTCATTCC..........................................................................................................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0

Generated: 04/24/2015 at 10:21 AM