dsi_26323

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAAACGGAGGATGCACCCATTTGGGCCGGGTCCCCATCCTTTTCGCAGCCTTTTTCAGCTCGCCTCGCCATCTTTGGTCTCGATTTGCATGCAAATATTTATATATGCAGTGCGGCAGGTGGAAAGTTTTGGGCGGCGGAGAGGCTCGAGCCTTGCCCAATTTGTCACACTCGAGCTGCACCATCCAGCAGC ************************************************((((((((((...((.((((...(((....)))....)))))).))))))))))......((((.((.(((((.((((....)))).((.((((((.((((.((((....))))....)))))))))).)).......))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
.....................TGTGCGATAAGGAGAACC...................................................................................................................................................................................................................	18	0	1	2.00	2	0	2	0	0	0	0	0	0
...................CGTGTGCGATAAGGAGAACC...................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................TAGAGCAGGGGAGGAGGAAACG..........................................................................................................................................................................................	22	3	1	1.00	1	0	0	0	1	0	0	0	0
..............ATTTACGTGTCCGATAAGGAGAACC...................................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0
.........................................AGAGTGCAGGAGAGGA.................................................................................................................................................................................................	16	1	4	0.50	2	0	0	2	0	0	0	0	0
.............................................TCCAGGTGAGGAGGACAGGGA........................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0	0	0	0
..........................................GAGTGCAGGAGAGGA.................................................................................................................................................................................................	15	1	20	0.20	4	0	0	4	0	0	0	0	0
.....................................CCATAGGGTGCGGGTGAGGA.................................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................CTCGAGCTGCACTAT........	15	1	8	0.13	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................TAAGCTTTGCGCGGCGGAG...................................................	19	3	9	0.11	1	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................TAGGCGGCCGAGAGGCT..............................................	17	2	9	0.11	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................CGGTGAGGCTGGAGCCTTA.....................................	19	3	10	0.10	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................GCTTTGGGCGGCGGATA..................................................	17	2	13	0.08	1	0	0	0	0	0	0	1	0
.........................................AGAGTGCAGGAGAGG..................................................................................................................................................................................................	15	1	17	0.06	1	0	0	0	0	0	0	1	0
.....................................CCACAGAGTGCAGGA......................................................................................................................................................................................................	15	1	18	0.06	1	0	0	0	0	0	0	1	0
.................................................................................................................................................CAGGCAAATATTTATA.........................................................................................	16	1	20	0.05	1	0	0	0	0	0	0	0	1
.........................................AGAGTGCAGGAGAGGAA................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................CGGCGTAGAGGATCGA...........................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0

TACGTGAGCCGAAGTAAATGCACACGCTATTCCTCTTGGTGTCTCACGTCCACTCCTCCTTTGCCTCCTACGTGGGTAAACCCGGCCCAGGGGTAGGAAAAGCGTCGGAAAAAGTCGAGCGGAGCGGTAGAAACCAGAGCTAAACGTACGTTTATAAATATATACGTCACGCCGTCCACCTTTCAAAACCCGCCGCCTCTCCGAGCTCGGAACGGGTTAAACAGTGTGAGCTCGACGTGGTAGGTCGTCG ************************************************((((((((((...((.((((...(((....)))....)))))).))))))))))......((((.((.(((((.((((....)))).((.((((((.((((.((((....))))....)))))))))).)).......))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M023 head	GSM343915 embryo	SRR618934 dsim w501 ovaries
.................................................................................ACGGCCCAGAGGTAGGAAA......................................................................................................................................................	19	2	1	1.00	1	0	0	0	1	0
..........................................................................................................GGAAGAAGTCGAGTGGAGCGGT..........................................................................................................................	22	2	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................CCTCTCCGAGATAGGAAC.....................................	18	2	2	1.00	2	0	0	2	0	0
..........................................................................................................GGAAGAAGTCGAGTGGAGCGG...........................................................................................................................	21	2	1	1.00	1	1	0	0	0	0
.........................................................................................................AGGAAGAAGTCGAGTGGAGCGGT..........................................................................................................................	23	3	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................ACCCGACGACTCTCCGAGCT...........................................	20	2	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................CCGTCTCTCCGAGCTTG.........................................	17	2	10	0.10	1	0	1	0	0	0
..............................................................................................................................................................................................CCCCGCCTCTCTGAGCTTG.........................................	19	3	16	0.06	1	0	0	0	0	1
...................................................................................................................................................................................................CCTCTCCTCGCTCGGAA......................................	17	2	17	0.06	1	0	0	0	0	1
...............................................................................................................................................................................................GCCGCATCTCCTAGCT...........................................	16	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:15544185-15544434 +	dsi_26323	ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ACGGA--GG-ATGCA-CCCAT---------TTGGG------------------C------------------------------------------------------------------------------------------------------CGGGT--CCCCATCCTT-TTCGCAGCCT-TTTTCAGCT------CGCC------TCGCCATCTTTGGT-C-TCGATTTGCATGCAAATATTTATATATGCA------GTGCGGC---------AGGTGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTC-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC
droSec2	scaffold_1:12401594-12401843 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ACGGA--GG-ATGCA-CCCAT---------TTGGG------------------C------------------------------------------------------------------------------------------------------CGGGC--CCCCATCCTT-TTGGCAGCCA-TTTTCAGTT------CCCC------TAGCCATCTTTGGT-C-TCGATTTGCATGCAAATATTTATATATGCA------GTGCGGC---------AGGTGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTC-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC
dm3	chr2R:14895202-14895451 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ACGGA--GG-ATGCA-CCCAT---------TTGGT------------------C------------------------------------------------------------------------------------------------------CGGGC--CCCCATCCTT-TTCGCAGCCT-TTTTCAGCT------CGCC------TCGCCATCTTCAGT-C-TCGATTTGCATGCAAATATTTATATATGCA------GTGGGGC---------ATGCGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTC-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAG---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC
droEre2	scaffold_4845:9091590-9091833 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ATGGA--GG-ATGCA-CCCAT---------TCGGG------------------CC-------------------------------------------------------------------------------------------------------------CCCATCCT--TTAGCAGCCT-TTTCCAGCT------CTCC------TCGCCATCTTCAGT-C-TCGATTTGCATGCAAATATTTATATATTCG------GTGGGGC---------AGGTGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AAGCTC-GAGCCTTTCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC
droYak3	2R:14298082-14298334 -		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGACGAA-ATGGA--GG-ATGCA-CCCAT---------TTTG-----------------------------------------------------------------------------------------------------------------------AGCCCGTA--CCCCATCCTT-TTAGCAGCCTTTTTTCAGCT------CGCC------TCGCCATCTTCAGT-C-TCGATTTGCATGCAAATATTTATATATTCG------GTGGGGC---------AGGTGCAA------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTT-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC
droEug1	scf7180000409663:433266-433541 -		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGTTGGG-GCTGG--GGGACTCGGCCCAT-----------------------------------------------------CCCATCC--------CAT----------------------------------------------------CCCATTTTCG----GTCCCTCCCATCCT---TGGCAGCCT-TTTCCAGCT------CGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGGC---------AGCAGCG-------------------------------------------------------------------------------------GCGGCAGGCTGG---GGA------GTTTT------------------GGCTC-GAGTCTTGCCCAATTTGTCACACTCGACGGGCTGCAC---------CAGCCTGCCCG-CCTC------------------------------------------------------------------------------------------------------------TTCAGC
droBia1	scf7180000302292:1468444-1468711 -		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGCCGAG---------GG-ACATG-CCCAT---------TTGGG------------------CA------------------------------------------------------------------------------------------------------CCCA--ACCCATCCCG-TCCGCAGTCT-TTTTCAGCT------GGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGGCAGGAGGGCCTG----G-------CAG-------------GT------------------------------------------------------------GGGTCAGGCGGGTGGGGA------GTT--------------------GGCTC-GAGCCGTGCCCAATTTGTCACACTCGA---GCTGCAC---------CACCCC------G-TC-------------------------------------------------------------------------------------C----------TC---CTGCCGGAGCAGC
droTak1	scf7180000415991:368265-368491 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGT--------------------G-TCCAT---------TTGGG------------------TC-------------------------------------------------------------------------------------------------------------CCCATCCCAATCCGCAGCCT-TTTTCAGCTGCTCCTGGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGGCTGGTGGGACTGGTGGG-------------------------------------------------------------------------------------G----------------A------GTT--------------------GGCTC-GAGCCGTGCCCAATTTGTCACACTCGA---GCTGCAT---------C--CC-----------------------------------------------------------------------------------------------------------------------AGCAGC
droEle1	scf7180000491228:11741-12007 -		ATGCACTCGGCTTCATTTACGTGTGCGACAAGGAGAACCACAGAGTGCAGGTGAGTCGGGGCAT-----GG-ATATG-GCCAT---------TTGAG------------------GC-------------------------------------------------------------------------------------------------------------TCCGTCCT------CAGCCTTTTTTCGGCT------CGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGG-GC---------AAGTGGA-------------------------------------------------------------------------------------T----------------AGTTGGGGCAGTGGCGGTGGCAGTGGCGGTGGCTC-GGG-CTTGCCCAATTTGTCACACTTGA---GCAGCAC---------CACCC-G-CCG-CCTC-------------------------------------------------------------------------------------C----------TCT-CATGCTAGAGCAGC
droRho1	scf7180000761504:1-216 -		ATGCACTCGGCTTCATTTACGTGTGCGACAAGGAGAACCACAGAGTGCAGGTGAGTCCG-------G--GG-ATATT-CCCAT---------TTGGT------------------CC-------------------------------------------------------------------------------------------------------------CCCGTCC------GCAGCCTTTTTTCGGCT------CGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGT--------ACAGGCGGG-------------------------------------------------------------------------------------G----------------A------GTT-----------------G-GGGCAC-GGGCCCTGCCCAATTTGTCACACTCGA---GCTGCAG---------CACCC-----------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454044:692099-692347 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGTTGTG-AGGGAGGGG-ATAGC-CCCAT---------TTGGG------------------CA-------------------------------------------------------------------------------------------------------------ACCATC------GGCAGCCT-TTTTCAGTC------CGCACACCCCT---TTTCTTCAAT-C-TCGATTTGCATGCAAATATTTATATACTCA------GTGGGGC---------ACGTGGG-------------------------------------------------------------------------------------G----------------A------GTTTTG-----------------GGCCC-GAGTCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CACCC-----G-GCTC--------------------TT----T--------------------------------------------------------------------------ATGCCGGAGCAGC
droKik1	scf7180000302682:653657-653853 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGTTGAGG-AAGCAGTGG-A-GCT-C-------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGCTACCATTTTTCAGCC----CTTGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATACCCTCCCTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------GGC-C-GTACCTTGCCCAATTTGTCACACTCGA---GCTGCAG---------C----------------------------------------------------------------------------------------------------------------------------TCAGC
droAna3	scaffold_13266:17436353-17436730 -		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGAAGCGG-GTTCA--GG-GTGT---TCTG---------TTGTGTCTCCATTTCCATTTCAGCTTCCACTGAGT------------CACC--------CATCCACCATCTGCCC--------------------ACCTGCCA-CCACCCATAACCCGCCTTCA----ATCTCTCTCACT---ATTCACAACCT-TTTCCAGTT------TGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGATCGGGC----TGGGTGAG-------------------------------------------------------------------------------------G----------------AGCTGGGGTGGTGG--GTGATGGGTGCA-AGGCTC-GAGTCCTGCCCAATTTGTCACACTTGA---GCTGCGCGCACA---CCACCCC--------TCCCCCAGGACACCCGCCGCACCTGGCAA--------------------------------------------------------------------------ATGCCAGAACAGC
droBip1	scf7180000396735:699302-699675 -		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGAAGCGG-GTTGA--GG-GTGT----------------TCTG-TCTCCATT------TCAGCTT--------TCCAGCCCATCTCCACC--------CATCGACCACCTGCCCCCACCCATCGCCGACAACCCACC-GCCAGCCACCCATCGCCCACCTTCA----ATCTCTCTCACT---ATTCACAACCT-TTTCCAGTT------TGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGATC---------GGGTGGG-------------------------------------------------------------------------------------GGGCTGGGCTGGTGGGTG------C-------------------A-AGGCTC-GAGTCCTGCCCAATTTGTCACACTTGA---GCTGCGCGCACA---CCACCCC------C-TCCCTC----CACCTG--GCACCTGGCAA--------------------------------------------------------------------------ATGCCAGAACAGC
dp5	3:5969088-5969280 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAAAACCACAGAGTGCAGGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------T---CATCCTCCAT-C-TCGATTTGCATGCAAATATTTATATTC--C-TC--TG--GT-G---------AGGT------------------------------------------------------------------------------------------------------------------------------CGA---G-AGGC-G-AAGCCTTGCCCAATTTGTCACACTTGA---GCTGGTGC-AGAG-----------------------------------------------------------------CCTCTTCGTGACCATATACTCCTCCTC---------CTCC----------TCC-------------AC
droPer2	scaffold_2:6170024-6170217 +		ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAAAACCACAGAGTGCAGGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------T---CATCCTCCAT-C-TCGATTTGCATGCAAATATTTATATTCCCT------CTGGT-G---------AGGT------------------------------------------------------------------------------------------------------------------------------CGA---G-AGGC-G-AAGCCTTGCCCAATTTGTCACACTTGA---GCTGGTGC-AGAG-----------------------------------------------------------------CCTCTTCGTGACCATATACTCCTCCTC---------CTCC----------TCC-------------AC
droWil2	scf2_1100000004510:2502034-2502311 +		ATGCACTCGGCTTCATTTACGTTTGCGATAAGGAGAACCACAGAGTGCAGGTAACCATCAT-CTCC---------T---TCCATCAGTATGCTTCA-TCTCCATTCCCAT--------------------------CTCCACCTCGCAGAGCATC----------------------------------------------------------CCA----ATGTCTCTTTCC---ATTCG----TT-CGTTCATTT------CGTC------A--GCATC----GA-C-TCGATTTCCATGCAAATATTTATAA--TCA------TCTGGGC---------AA-----------------------------------------------------------------------------------------------------------------------------------------------GGACCTTGCCCAATTTGTCACACTTGA---GCTACGGC-CAAGCACCATGGT--CCAAG-TCCA--------------------AGCCCAAGCCATC------------------------------------GGTA-------------------------------GCATCAGC
droVir3	scaffold_12875:19579009-19579308 -	dvi_7984	ATGCACTCGGCTTCATTTACGTTTGCGATAAGGAGAACCACAGAGTGCAGGTAACGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------GTGCTTCTGCCATTTGCATGCAAATATTTATAATC--A-TC--AGCAGG--------------AGCAAAGGCGGCGGCTGCCAGAGAGAAGCGGAAGCAGCGGCCAGGGTCACATGGCCAAGCCCCAGC-CAGATCCGCAGTGCCAGAGCCAA----------------A------GTCGG------AGCCGA---G-A-GCTCAGAGTCTTGCCCAATTTGTCACACTTGA---GCTACGG---------CAGGC------------------------------------AGAAGGCAGC------------------------------------TGTAGCTGCAGCTGCAGCCACGCCCACTGCAAG---GCAGAGC
droMoj3	scaffold_6496:6622868-6622922 -		ATGCACTCGGCTTCATTTACGTATGCGATAAGGAGAACCACAGAGTGCAGGTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:17971506-17971794 +		ATGCACTCGGCTTCATTTACGTTTGCGATAAGGAGAACCACAGAGTGCAGGTAACGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------GCTTT-CCCATTTGCAT---AATATTTATAATC--A-TC--AGCAGC--------------AGCAGGAGCAGCAGCGGCCACAATAAAGC--------CGGTCAGGGTCACATAACCAAGCACAGGCGCAGATCCAC------AGAACTAG----------------A------GTCGG------AGCCCA---G--TGCTCAGCATCTTGCTCAATTTGTCACACTTGA---GCTATGG---------CAGGC------------------------------------AGAAGGCAGCACCTGTCTTTGCCTCT-----------------GCCTCTAGCTCCAGCTTC----------TTT----ACAGGCATAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ACGGA--GG-ATGCA-CCCAT---------TTGGG------------------C------------------------------------------------------------------------------------------------------CGGGT--CCCCATCCTT-TTCGCAGCCT-TTTTCAGCT------CGCC------TCGCCATCTTTGGT-C-TCGATTTGCATGCAAATATTTATATATGCA------GTGCGGC---------AGGTGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTC-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................TGTGCGATAAGGAGAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CGTGTGCGATAAGGAGAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CCACAGAGTGCAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	18	0.06	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ACGGA--GG-ATGCA-CCCAT---------TTGGG------------------C------------------------------------------------------------------------------------------------------CGGGC--CCCCATCCTT-TTGGCAGCCA-TTTTCAGTT------CCCC------TAGCCATCTTTGGT-C-TCGATTTGCATGCAAATATTTATATATGCA------GTGCGGC---------AGGTGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTC-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ACGGA--GG-ATGCA-CCCAT---------TTGGT------------------C------------------------------------------------------------------------------------------------------CGGGC--CCCCATCCTT-TTCGCAGCCT-TTTTCAGCT------CGCC------TCGCCATCTTCAGT-C-TCGATTTGCATGCAAATATTTATATATGCA------GTGGGGC---------ATGCGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTC-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAG---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................AACCACAGAGTGCAGGTGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATTTACGTGTGCGATAAGGAGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTTACGTGTGCGATAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............TTTACGTGTGCGATAAGGAGAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATTTACGTGTGCGATAAGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GATAAGGAGAACCACAGAGTGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATTTGTCACACTCGA---GCT...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................CGATAAGGAGAACCACAGAGTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................CGTGTGCGATAAGGAGAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATTTACGTGTGCGATAAGGAGAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATTTACGTGTGCGATAAGGAGAACCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTTACGTGTGCGATAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTGTGCGATAAGGAGAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAACCACAGAGTGCAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGGAGAACCACAGAGTGCAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAGAACCACAGAGTGCAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGAGGAA-ATGGA--GG-ATGCA-CCCAT---------TCGGG------------------CC-------------------------------------------------------------------------------------------------------------CCCATCCT--TTAGCAGCCT-TTTCCAGCT------CTCC------TCGCCATCTTCAGT-C-TCGATTTGCATGCAAATATTTATATATTCG------GTGGGGC---------AGGTGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AAGCTC-GAGCCTTTCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................GTGAGGAGGAA-ATGGA--GG-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..........................GATAAGGAGAACCACAGAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................TGGA-------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGC...............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........GGCTTCATTTACGTGTGCGATAAGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0

droYak3

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGACGAA-ATGGA--GG-ATGCA-CCCAT---------TTTG-----------------------------------------------------------------------------------------------------------------------AGCCCGTA--CCCCATCCTT-TTAGCAGCCTTTTTTCAGCT------CGCC------TCGCCATCTTCAGT-C-TCGATTTGCATGCAAATATTTATATATTCG------GTGGGGC---------AGGTGCAA------------------------------------------------------------------------------------A----------------A------GTTTTGG--GCGGCGGA---G-AGGCTT-GAGCCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CATCC-----------------------------------------------------------------------------------------------------------------------AGCAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............TCATTTACGTGTGCGATAAGGAGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......TCGGCTTCATTTACGTGTGCGATAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............TTTACGTGTGCGATAAGGAGAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGTTGGG-GCTGG--GGGACTCGGCCCAT-----------------------------------------------------CCCATCC--------CAT----------------------------------------------------CCCATTTTCG----GTCCCTCCCATCCT---TGGCAGCCT-TTTCCAGCT------CGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGGC---------AGCAGCG-------------------------------------------------------------------------------------GCGGCAGGCTGG---GGA------GTTTT------------------GGCTC-GAGTCTTGCCCAATTTGTCACACTCGACGGGCTGCAC---------CAGCCTGCCCG-CCTC------------------------------------------------------------------------------------------------------------TTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGCCGAG---------GG-ACATG-CCCAT---------TTGGG------------------CA------------------------------------------------------------------------------------------------------CCCA--ACCCATCCCG-TCCGCAGTCT-TTTTCAGCT------GGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGGCAGGAGGGCCTG----G-------CAG-------------GT------------------------------------------------------------GGGTCAGGCGGGTGGGGA------GTT--------------------GGCTC-GAGCCGTGCCCAATTTGTCACACTCGA---GCTGCAC---------CACCCC------G-TC-------------------------------------------------------------------------------------C----------TC---CTGCCGGAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGT--------------------G-TCCAT---------TTGGG------------------TC-------------------------------------------------------------------------------------------------------------CCCATCCCAATCCGCAGCCT-TTTTCAGCTGCTCCTGGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGGCTGGTGGGACTGGTGGG-------------------------------------------------------------------------------------G----------------A------GTT--------------------GGCTC-GAGCCGTGCCCAATTTGTCACACTCGA---GCTGCAT---------C--CC-----------------------------------------------------------------------------------------------------------------------AGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGCACTCGGCTTCATTTACGTGTGCGACAAGGAGAACCACAGAGTGCAGGTGAGTCGGGGCAT-----GG-ATATG-GCCAT---------TTGAG------------------GC-------------------------------------------------------------------------------------------------------------TCCGTCCT------CAGCCTTTTTTCGGCT------CGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGG-GC---------AAGTGGA-------------------------------------------------------------------------------------T----------------AGTTGGGGCAGTGGCGGTGGCAGTGGCGGTGGCTC-GGG-CTTGCCCAATTTGTCACACTTGA---GCAGCAC---------CACCC-G-CCG-CCTC-------------------------------------------------------------------------------------C----------TCT-CATGCTAGAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGCACTCGGCTTCATTTACGTGTGCGACAAGGAGAACCACAGAGTGCAGGTGAGTCCG-------G--GG-ATATT-CCCAT---------TTGGT------------------CC-------------------------------------------------------------------------------------------------------------CCCGTCC------GCAGCCTTTTTTCGGCT------CGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGGT--------ACAGGCGGG-------------------------------------------------------------------------------------G----------------A------GTT-----------------G-GGGCAC-GGGCCCTGCCCAATTTGTCACACTCGA---GCTGCAG---------CACCC-----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGGTTGTG-AGGGAGGGG-ATAGC-CCCAT---------TTGGG------------------CA-------------------------------------------------------------------------------------------------------------ACCATC------GGCAGCCT-TTTTCAGTC------CGCACACCCCT---TTTCTTCAAT-C-TCGATTTGCATGCAAATATTTATATACTCA------GTGGGGC---------ACGTGGG-------------------------------------------------------------------------------------G----------------A------GTTTTG-----------------GGCCC-GAGTCTTGCCCAATTTGTCACACTCGA---GCTGCAC---------CACCC-----G-GCTC--------------------TT----T--------------------------------------------------------------------------ATGCCGGAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGTTGAGG-AAGCAGTGG-A-GCT-C-------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGCTACCATTTTTCAGCC----CTTGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATACCCTCCCTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------GGC-C-GTACCTTGCCCAATTTGTCACACTCGA---GCTGCAG---------C----------------------------------------------------------------------------------------------------------------------------TCAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGAAGCGG-GTTCA--GG-GTGT---TCTG---------TTGTGTCTCCATTTCCATTTCAGCTTCCACTGAGT------------CACC--------CATCCACCATCTGCCC--------------------ACCTGCCA-CCACCCATAACCCGCCTTCA----ATCTCTCTCACT---ATTCACAACCT-TTTCCAGTT------TGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGATCGGGC----TGGGTGAG-------------------------------------------------------------------------------------G----------------AGCTGGGGTGGTGG--GTGATGGGTGCA-AGGCTC-GAGTCCTGCCCAATTTGTCACACTTGA---GCTGCGCGCACA---CCACCCC--------TCCCCCAGGACACCCGCCGCACCTGGCAA--------------------------------------------------------------------------ATGCCAGAACAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................GTGTGCGATAAGGAGAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................AGGAGAACCACAGAGTGCAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.......CGGCTTCATTTACGTGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................TTACGTGTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..................ACGTGTGCGATAAGGAGAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................GTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAGAACCACAGAGTGCAGGTGAGAAGCGG-GTTGA--GG-GTGT----------------TCTG-TCTCCATT------TCAGCTT--------TCCAGCCCATCTCCACC--------CATCGACCACCTGCCCCCACCCATCGCCGACAACCCACC-GCCAGCCACCCATCGCCCACCTTCA----ATCTCTCTCACT---ATTCACAACCT-TTTCCAGTT------TGCC------T--CCATCTTCAAT-C-TCGATTTGCATGCAAATATTTATATATTCA------GTGGATC---------GGGTGGG-------------------------------------------------------------------------------------GGGCTGGGCTGGTGGGTG------C-------------------A-AGGCTC-GAGTCCTGCCCAATTTGTCACACTTGA---GCTGCGCGCACA---CCACCCC------C-TCCCTC----CACCTG--GCACCTGGCAA--------------------------------------------------------------------------ATGCCAGAACAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAAAACCACAGAGTGCAGGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------T---CATCCTCCAT-C-TCGATTTGCATGCAAATATTTATATTC--C-TC--TG--GT-G---------AGGT------------------------------------------------------------------------------------------------------------------------------CGA---G-AGGC-G-AAGCCTTGCCCAATTTGTCACACTTGA---GCTGGTGC-AGAG-----------------------------------------------------------------CCTCTTCGTGACCATATACTCCTCCTC---------CTCC----------TCC-------------AC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............TTTACGTGTGCGATAAGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................ATAAGGAAAACCACAGAGTGCAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................TTACGTGTGCGATAAGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TTTACGTGTGCGATAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................CGTGTGCGATAAGGAAAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................TGCGATAAGGAAAACCACAGAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

ATGCACTCGGCTTCATTTACGTGTGCGATAAGGAAAACCACAGAGTGCAGGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------T---CATCCTCCAT-C-TCGATTTGCATGCAAATATTTATATTCCCT------CTGGT-G---------AGGT------------------------------------------------------------------------------------------------------------------------------CGA---G-AGGC-G-AAGCCTTGCCCAATTTGTCACACTTGA---GCTGGTGC-AGAG-----------------------------------------------------------------CCTCTTCGTGACCATATACTCCTCCTC---------CTCC----------TCC-------------AC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............TTTACGTGTGCGATAAGGAAAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................GT-G---------AGGT------------------------------------------------------------------------------------------------------------------------------CGA---G-AGGC-G-AAGCC...........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

ATGCACTCGGCTTCATTTACGTTTGCGATAAGGAGAACCACAGAGTGCAGGTAACCATCAT-CTCC---------T---TCCATCAGTATGCTTCA-TCTCCATTCCCAT--------------------------CTCCACCTCGCAGAGCATC----------------------------------------------------------CCA----ATGTCTCTTTCC---ATTCG----TT-CGTTCATTT------CGTC------A--GCATC----GA-C-TCGATTTCCATGCAAATATTTATAA--TCA------TCTGGGC---------AA-----------------------------------------------------------------------------------------------------------------------------------------------GGACCTTGCCCAATTTGTCACACTTGA---GCTACGGC-CAAGCACCATGGT--CCAAG-TCCA--------------------AGCCCAAGCCATC------------------------------------GGTA-------------------------------GCATCAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................TACGTTTGCGATAAGGAGAACCACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0
................................GAGAACCACAGAGTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
............TCATTTACGTTTGCGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCCCAATTTGTCACACT........................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................ACGTTTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..........................GATAAGGAGAACCACAGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
..........................GATAAGGAGAACCACAGAGTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...........................ATAAGGAGAACCACAGAGTGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
............................TAAGGAGAACCACAGAGTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
.......CGGCTTCATTTACGTTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

droVir3

ATGCACTCGGCTTCATTTACGTTTGCGATAAGGAGAACCACAGAGTGCAGGTAACGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------GTGCTTCTGCCATTTGCATGCAAATATTTATAATC--A-TC--AGCAGG--------------AGCAAAGGCGGCGGCTGCCAGAGAGAAGCGGAAGCAGCGGCCAGGGTCACATGGCCAAGCCCCAGC-CAGATCCGCAGTGCCAGAGCCAA----------------A------GTCGG------AGCCGA---G-A-GCTCAGAGTCTTGCCCAATTTGTCACACTTGA---GCTACGG---------CAGGC------------------------------------AGAAGGCAGC------------------------------------TGTAGCTGCAGCTGCAGCCACGCCCACTGCAAG---GCAGAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................GAACCACAGAGTGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATTTACGTTTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................TACGTTTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGGAGAACCACAGAGTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTTGCGATAAGGAGAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTTGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTTGCGATAAGGAGAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................AGGAGAACCACAGAGTGCAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

ATGCACTCGGCTTCATTTACGTATGCGATAAGGAGAACCACAGAGTGCAGGTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................AAGGAGAACCACAGAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................AAGGAGAACCACAGAGTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................GAGAACCACAGAGTGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............TTTACGTATGCGATAAGGAGAACCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................GATAAGGAGAACCACAGAGTGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................ATAAGGAGAACCACAGAGTGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..................ACGTATGCGATAAGGAGAACCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droGri2

ATGCACTCGGCTTCATTTACGTTTGCGATAAGGAGAACCACAGAGTGCAGGTAACGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------GCTTT-CCCATTTGCAT---AATATTTATAATC--A-TC--AGCAGC--------------AGCAGGAGCAGCAGCGGCCACAATAAAGC--------CGGTCAGGGTCACATAACCAAGCACAGGCGCAGATCCAC------AGAACTAG----------------A------GTCGG------AGCCCA---G--TGCTCAGCATCTTGCTCAATTTGTCACACTTGA---GCTATGG---------CAGGC------------------------------------AGAAGGCAGCACCTGTCTTTGCCTCT-----------------GCCTCTAGCTCCAGCTTC----------TTT----ACAGGCATAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................................AGCAGC--------------AGCAGGAGCAGC..................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	3	0
....................................................................................................................................................................................................................................................................................................................................AGCAGC--------------AGCAGGAGCAGCAGC...............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1
.................................................................................................................................................................................................................................................................................................................................C--AGCAGC--------------AGCAGGAGCAGCAGC...............................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1

dsi_26323

2r:15544235-15544384 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads